161 results on '"Fernando Scaglia"'
Search Results
2. P050: Biallelic variants in POLG2 provides a rare molecular diagnosis in a patient with epilepsy and liver failure
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Vittoria Rossi, Dan Brooks, Hongzheng Dai, Elizabeth Mizerik, Yishay Ben-Moshe, Seema Lalani, Daryl Scott, Fernando Scaglia, Keren Machol, and Mir Reza Bekheirnia
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Genetics ,QH426-470 ,Medicine - Published
- 2024
- Full Text
- View/download PDF
3. Gain and loss of TASK3 channel function and its regulation by novel variation cause KCNK9 imprinting syndrome
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Margot A. Cousin, Emma L. Veale, Nikita R. Dsouza, Swarnendu Tripathi, Robyn G. Holden, Maria Arelin, Geoffrey Beek, Mir Reza Bekheirnia, Jasmin Beygo, Vikas Bhambhani, Martin Bialer, Stefania Bigoni, Cyrus Boelman, Jenny Carmichael, Thomas Courtin, Benjamin Cogne, Ivana Dabaj, Diane Doummar, Laura Fazilleau, Alessandra Ferlini, Ralitza H. Gavrilova, John M. Graham, Tobias B. Haack, Jane Juusola, Sarina G. Kant, Saima Kayani, Boris Keren, Petra Ketteler, Chiara Klöckner, Tamara T. Koopmann, Teresa M. Kruisselbrink, Alma Kuechler, Laëtitia Lambert, Xénia Latypova, Robert Roger Lebel, Magalie S. Leduc, Emanuela Leonardi, Andrea M. Lewis, Wendy Liew, Keren Machol, Samir Mardini, Kirsty McWalter, Cyril Mignot, Julie McLaughlin, Alessandra Murgia, Vinodh Narayanan, Caroline Nava, Sonja Neuser, Mathilde Nizon, Davide Ognibene, Joohyun Park, Konrad Platzer, Céline Poirsier, Maximilian Radtke, Keri Ramsey, Cassandra K. Runke, Maria J. Guillen Sacoto, Fernando Scaglia, Marwan Shinawi, Stephanie Spranger, Ee Shien Tan, John Taylor, Anne-Sophie Trentesaux, Filippo Vairo, Rebecca Willaert, Neda Zadeh, Raul Urrutia, Dusica Babovic-Vuksanovic, Michael T. Zimmermann, Alistair Mathie, and Eric W. Klee
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KCNK9 imprinting syndrome ,TASK3 channel ,Neurodevelopmental disorder ,Electrophysiology ,Computational protein modeling ,Medicine ,Genetics ,QH426-470 - Abstract
Abstract Background Genomics enables individualized diagnosis and treatment, but large challenges remain to functionally interpret rare variants. To date, only one causative variant has been described for KCNK9 imprinting syndrome (KIS). The genotypic and phenotypic spectrum of KIS has yet to be described and the precise mechanism of disease fully understood. Methods This study discovers mechanisms underlying KCNK9 imprinting syndrome (KIS) by describing 15 novel KCNK9 alterations from 47 KIS-affected individuals. We use clinical genetics and computer-assisted facial phenotyping to describe the phenotypic spectrum of KIS. We then interrogate the functional effects of the variants in the encoded TASK3 channel using sequence-based analysis, 3D molecular mechanic and dynamic protein modeling, and in vitro electrophysiological and functional methodologies. Results We describe the broader genetic and phenotypic variability for KIS in a cohort of individuals identifying an additional mutational hotspot at p.Arg131 and demonstrating the common features of this neurodevelopmental disorder to include motor and speech delay, intellectual disability, early feeding difficulties, muscular hypotonia, behavioral abnormalities, and dysmorphic features. The computational protein modeling and in vitro electrophysiological studies discover variability of the impact of KCNK9 variants on TASK3 channel function identifying variants causing gain and others causing loss of conductance. The most consistent functional impact of KCNK9 genetic variants, however, was altered channel regulation. Conclusions This study extends our understanding of KIS mechanisms demonstrating its complex etiology including gain and loss of channel function and consistent loss of channel regulation. These data are rapidly applicable to diagnostic strategies, as KIS is not identifiable from clinical features alone and thus should be molecularly diagnosed. Furthermore, our data suggests unique therapeutic strategies may be needed to address the specific functional consequences of KCNK9 variation on channel function and regulation.
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- 2022
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4. 11979 Using whole-exome and mtDNA sequencing to develop a testing algorithm for diagnosis of mitochondrial disease in Puerto Ricans
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Elinette Albino, Carmen Buxo, Fernando Scaglia, and Alberto Santiago-Cornier
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Medicine - Abstract
ABSTRACT IMPACT: Alterations in mitochondrial metabolism affect any tissue, especially those with the highest demand for energy. As the symptoms and clinical manifestations are heterogenous, disease diagnosis is challenging. The implementation of genetic-first approach in the diagnosis of mitochondrial diseases will expedite confirmation, treatment, management, and counseling of affected Puerto Rican individuals. OBJECTIVES/GOALS: Mitochondrial diseases are rare, and diagnosis is complex due to the heterogeneity of clinical manifestations. We aim to develop and implement a testing algorithm using a genetics-first approach, facilitating the identification of variants that contribute to mitochondrial disease’s etiology and influence onset and progression in Puerto Ricans. METHODS/STUDY POPULATION: This is a cross-sectional study for characterizing clinical laboratory results from profiles used to evaluate metabolic diseases in individuals with suspected mitochondrial disorders from 2018 to 2021. A subset of 25 individuals from biochemical profile will be recruited to analyze their medical and family history, metabolic biomarkers in blood and urine, hearing test, imaging and chromosomal microarray. The implementation of a genetic testing algorithm using whole exome and mitochondrial DNA sequencing will be performed in a subset of 11 randomized individuals. Descriptive analysis will be reported, including a catalog of all variants. Multivariate analysis will be performed to estimate the statistical association between variants and phenotypes reported and adjusting for potential confounders. RESULTS/ANTICIPATED RESULTS: The biochemical profile of pediatric Puerto Rican individuals suspected of having mitochondrial diseases will be altered and can be used to differentiate among other metabolic causes. We expect to find altered levels of lactate, pyruvate and carnitines in serum, as well as altered organic acids in urine. The implementation of a testing algorithm using both, mitochondrial DNA and whole exome sequencing as first approach will be enabling the identification of disease-causing variants, thus enhancing and confirming the diagnosis of mitochondrial disease in Puerto Ricans. We will be able to identify rare/novel variants specific to our Hispanic population, for both nuclear and mitochondrial DNA. DISCUSSION/SIGNIFICANCE OF FINDINGS: This study will help to characterize the metabolic profile of pediatric Puerto Ricans. No previous study has been reported that describes testing algorithms for genetic diagnosis of mitochondrial disease in our population. Variants found will contribute to a deep understanding of the genetic contribution to phenotypes and disease susceptibility.
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- 2021
- Full Text
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5. A phenotypic expansion of <scp> TRNT1 </scp> associated sideroblastic anemia with immunodeficiency, fevers, and developmental delay
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Sarah H. Elsea, Amber Meshell Mayfield Yates, Charul Gijavanekar, Yuezhen Lin, Fernando Scaglia, Hitha Amin, Lorraine Potocki, Stephen F. Kralik, Javier Chinen, John D Odom, and Elizabeth Mizerik
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Fever ,business.industry ,TRNA processing ,Context (language use) ,Disease ,Hypoglycemia ,medicine.disease ,Nucleotidyltransferases ,Phenotype ,Anemia, Sideroblastic ,Growth hormone deficiency ,Sideroblastic anemia ,Mutation ,Immunology ,Genetics ,medicine ,Humans ,business ,Genetics (clinical) ,Immunodeficiency - Abstract
Sideroblastic anemia with immunodeficiency, fevers, and developmental delay (SIFD; MIM #616084) is an autosomal recessive disorder of mitochondrial and cytosolic tRNA processing caused by pathogenic, biallelic variants in TRNT1. Other features of this disorder include central nervous system, renal, cardiac, ophthalmological features, and sensorineural hearing impairment. SIFD was first described in 2013 and to date, it has been reported in 46 patients. Herein, we review the literature and describe two siblings with SIFD and note the novel phenotype of hypoglycemia in the context of growth hormone (GH) deficiency. GH deficiency without hypoglycemia has previously been reported in three patients with SIFD, but GH deficiency had not been firmly ascribed to SIFD. We propose to expand the phenotype to include GH deficiency, hypoglycemia, and previously unreported dysmorphic features. Furthermore, we highlight the intrafamilial variability of the disease by the discordance of our patients' clinical phenotypes and biochemical profiles measured by untargeted metabolomics analysis. Several metabolomic abnormalities were observed in both patients, and these may represent a potential biochemical signature for SIFD.
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- 2021
6. Expansion of the clinical phenotype of <scp>GALE</scp> deficiency
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Lisa Forbes Satter, Rebecca Markovitz, Donald H. Mahoney, Nichole Owen, Fernando Scaglia, Alison A. Bertuch, and Susan E Kirk
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chemistry.chemical_classification ,Galactose epimerase deficiency ,Glycosylation ,business.industry ,Galactosemia ,Disease ,Immune dysregulation ,medicine.disease_cause ,medicine.disease ,Pancytopenia ,carbohydrates (lipids) ,chemistry.chemical_compound ,Immune system ,chemistry ,Immunology ,Genetics ,Medicine ,business ,Glycoprotein ,Genetics (clinical) - Abstract
Congenital disorders of glycosylation are a group of rare monogenic inborn errors of metabolism caused by defective glycoprotein and glycolipid glycan synthesis and attachment. Here, we present a patient with galactose epimerase deficiency, also known as GALE deficiency, accompanied by pancytopenia and immune dysregulation. She was first identified by an abnormal newborn screen for galactosemia with subsequent genetic evaluation due to pancytopenia and immune dysregulation. The evaluation ultimately revealed that her known diagnosis of GALE deficiency was the cause of her hematologic and immune abnormalities. These findings further expand the clinical spectrum of disease of congenital disorders of glycosylation.
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- 2021
7. Acute Strokelike Presentation and Long-term Evolution of Diffusion Restriction Pattern in Ethylmalonic Encephalopathy
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Sarah H. Elsea, Mir Reza Bekheirnia, Jaehyung Lim, Gregory M. Rice, Mary Elizabeth M. Tessier, Erica Lay, Claudia Soler-Alfonso, Fernando Scaglia, Stephen F. Kralik, and Brian J. Shayota
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Male ,0301 basic medicine ,Pediatrics ,medicine.medical_specialty ,Ataxia ,Adolescent ,Mitochondrial disease ,Time ,Diagnosis, Differential ,03 medical and health sciences ,0302 clinical medicine ,Ethylmalonic encephalopathy ,medicine ,Humans ,Child ,Purpura ,Acrocyanosis ,business.industry ,Brain ,Brain Diseases, Metabolic, Inborn ,Infant ,Sulfur dioxygenase ,medicine.disease ,Magnetic Resonance Imaging ,Hypotonia ,Stroke ,030104 developmental biology ,Child, Preschool ,Pediatrics, Perinatology and Child Health ,Female ,ETHE1 ,Neurology (clinical) ,medicine.symptom ,business ,Developmental regression ,030217 neurology & neurosurgery - Abstract
Ethylmalonic encephalopathy is a rare autosomal recessive mitochondrial disorder caused by pathogenic biallelic variants in the ETHE1 gene. The phenotype of this disease has been attributed to deficiency in the mitochondrial sulfur dioxygenase leading to many downstream effects. Ethylmalonic encephalopathy classically presents with developmental regression, petechiae, acrocyanosis, and chronic diarrhea. The neurologic phenotype includes hypotonia, spastic diplegia, ataxia, and developmental delay. As more patients with this condition are described, the neurologic phenotype continues to expand. Although strokelike episodes or metabolic strokes have been studied in other mitochondrial disorders, they have not been thoroughly reported in this disorder. Herein, we describe 3 patients with ethylmalonic encephalopathy who presented clinically with strokelike episodes and strokelike abnormalities on brain magnetic resonance imaging in the setting of acute illness, and the long-term sequelae with evolution into cystic changes in one of these subjects.
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- 2021
8. Hematologic presentation and the role of untargeted metabolomics analysis in monitoring treatment for riboflavin transporter deficiency
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Sarah H. Elsea, Charul Gijavanekar, Nishitha R. Pillai, Alison A. Bertuch, Fernando Scaglia, Ning Liu, Hitha Amin, Niveen Issaq, Katarzyna A. Broniowska, and V. Reid Sutton
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0301 basic medicine ,medicine.medical_specialty ,Ataxia ,Anemia ,business.industry ,Riboflavin ,030105 genetics & heredity ,Neutropenia ,medicine.disease ,Gastroenterology ,03 medical and health sciences ,030104 developmental biology ,Peripheral neuropathy ,Adenine nucleotide ,Internal medicine ,Genetics ,medicine ,Macrocytic anemia ,medicine.symptom ,Megaloblastic anemia ,business ,Genetics (clinical) - Abstract
Riboflavin transporter deficiency (RTD) (MIM #614707) is a neurogenetic disorder with its most common manifestations including sensorineural hearing loss, peripheral neuropathy, respiratory insufficiency, and bulbar palsy. Here, we present a 2-year-old boy whose initial presentation was severe macrocytic anemia necessitating multiple blood transfusions and intermittent neutropenia; he subsequently developed ataxia and dysarthria. Trio-exome sequencing detected compound heterozygous variants in SLC52A2 that were classified as pathogenic and a variant of uncertain significance. Bone marrow evaluation demonstrated megaloblastic changes. Notably, his anemia and neutropenia resolved after treatment with oral riboflavin, thus expanding the clinical phenotype of this disorder. We reiterate the importance of starting riboflavin supplementation in a young child who presents with macrocytic anemia and neurological features while awaiting biochemical and genetic work up. We detected multiple biochemical abnormalities with the help of untargeted metabolomics analysis associated with abnormal flavin adenine nucleotide function which normalized after treatment, emphasizing the reversible pathomechanisms involved in this disorder. The utility of untargeted metabolomics analysis to monitor the effects of riboflavin supplementation in RTD has not been previously reported.
- Published
- 2020
9. Clinical trials in mitochondrial disorders, an update
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May Ali, Fernando Scaglia, Claudia Soler-Alfonso, Ayman W. El-Hattab, and Mohammed Almannai
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0301 basic medicine ,Mitochondrial Diseases ,Endocrinology, Diabetes and Metabolism ,Mitochondrial disease ,Review Article ,Disease ,030105 genetics & heredity ,Mitochondrion ,Bioinformatics ,DNA, Mitochondrial ,Biochemistry ,Antioxidants ,law.invention ,03 medical and health sciences ,0302 clinical medicine ,Endocrinology ,Randomized controlled trial ,Mitochondria randomized clinical trials ,Mitochondrial augmentation ,Mitochondrial biogenesis ,law ,Genetics ,medicine ,Humans ,Molecular Biology ,Clinical Trials as Topic ,business.industry ,Treatment options ,Genetic Therapy ,medicine.disease ,Mitochondria ,Clinical trial ,Treatment modality ,business ,030217 neurology & neurosurgery - Abstract
Mitochondrial disorders comprise a molecular and clinically diverse group of diseases that are associated with mitochondrial dysfunction leading to multi-organ disease. With recent advances in molecular technologies, the understanding of the pathomechanisms of a growing list of mitochondrial disorders has been greatly expanded. However, the therapeutic approaches for mitochondrial disorders have lagged behind with treatment options limited mainly to symptom specific therapies and supportive measures. There is an increasing number of clinical trials in mitochondrial disorders aiming for more specific and effective therapies. This review will cover different treatment modalities currently used in mitochondrial disorders, focusing on recent and ongoing clinical trials.
- Published
- 2020
10. Clinical and biochemical improvement with galactose supplementation in SLC35A2-CDG
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Mari Mori, Rita Barone, Katrin Õunap, Ramona Salvarinova, Fernando Scaglia, Eva Morava, Jolanta Sykut-Cegielska, Sabine Grønborg, Peter Witters, Miao He, Andrew C. Edmondson, Andrea M. Lewis, Shawn Tahata, and George E. Hoganson
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congenital, hereditary, and neonatal diseases and abnormalities ,medicine.medical_specialty ,Glycosylation ,glycosylation ,galactose ,Nijmegen Pediatric CDG Rating Scale (NCPRS) ,Gastroenterology ,Article ,Postural control ,chemistry.chemical_compound ,symbols.namesake ,Epilepsy ,Congenital Disorders of Glycosylation ,Swallowing ,Internal medicine ,SLC35A2-CDG ,medicine ,Humans ,Dietary therapy ,Child ,Genetics (clinical) ,glycan ,business.industry ,Epileptic encephalopathy ,Golgi apparatus ,medicine.disease ,chemistry ,Galactose ,Dietary Supplements ,symbols ,Nijmegen Pediatric CDG Rating Scale (NPCRS) ,business - Abstract
We studied galactose supplementation in SLC35A2-congenital disorder of glycosylation (SLC35A2-CDG), caused by monoallelic pathogenic variants in SLC35A2 (Xp11.23), encoding the endoplasmic reticulum (ER) and Golgi UDP-galactose transporter. Patients present with epileptic encephalopathy, developmental disability, growth deficiency, and dysmorphism. Ten patients with SLC35A2-CDG were supplemented with oral D-galactose for 18 weeks in escalating doses up to 1.5 g/kg/day. Outcome was assessed using the Nijmegen Pediatric CDG Rating Scale (NPCRS, ten patients) and by glycomics (eight patients). SLC35A2-CDG patients demonstrated improvements in overall Nijmegen Pediatric CDG Rating Scale (NPCRS) score (P = 0.008), the current clinical assessment (P = 0.007), and the system specific involvement (P = 0.042) domains. Improvements were primarily in growth and development with five patients resuming developmental progress, which included postural control, response to stimuli, and chewing and swallowing amelioration. Additionally, there were improvements in gastrointestinal symptoms and epilepsy. One patient in our study did not show any clinical improvement. Galactose supplementation improved patients’ glycosylation with decreased ratios of incompletely formed to fully formed glycans (M-gal/disialo, P = 0.012 and monosialo/disialo, P = 0.017) and increased levels of a fully galactosylated N-glycan (P = 0.05). Oral D-galactose supplementation results in clinical and biochemical improvement in SLC35A2-CDG. Galactose supplementation may partially overcome the Golgi UDP-galactose deficiency and improves galactosylation. Oral galactose is well tolerated and shows promise as dietary therapy.
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- 2020
11. Severe Generalized Epidermolysis Bullosa Simplex in Two Hong Kong Children due to De Novo Variants in KRT14 and KRT5
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Fernando Scaglia, Yu Ming Fu, Shuk Ching Chong, Chung Mo Chow, Kam Lun Hon, Tor Chiu, and Alexander K. C. Leung
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0303 health sciences ,medicine.medical_specialty ,Generalized epidermolysis bullosa simplex ,business.industry ,Genodermatosis ,Case Report ,General Medicine ,medicine.disease ,Pediatrics ,Dermatology ,RJ1-570 ,Recurrence risk ,030207 dermatology & venereal diseases ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Family history ,business ,Genetic diagnosis ,Gene ,030304 developmental biology - Abstract
We report two Hong Kong children with severe generalized epidermolysis bullosa simplex (EBS), the most severe form of EBS, without a family history of EBS. EBS is a rare genodermatosis usually inherited in an autosomal dominant fashion although rare autosomal recessive cases have been reported. Genetic studies in these patients showed that the first case was due to a novel de novo heterozygous variant, c.377T>G (NM_000526.5 (c.377T>G, p.Leu126Arg)) in the KRT14 gene and the second case was due to a rare de novo heterozygous variant c.527A>G (NM_000424.4, c.527A>G, p.Asn176Ser) in the KRT5 gene. To our knowledge, the c.377T>G variant in the KRT14 gene has not been previously reported, and the c.527A>G variant in the KRT5 gene is a rare cause of severe generalized EBS. In severe generalized EBS, infants exhibit severe symptoms at the onset; however, they tend to improve with time. A precise genetic diagnosis in these two cases aided in counseling the families concerning the prognosis in their affected children and the recurrence risk for future pregnancies.
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- 2020
12. Safety and efficacy of omaveloxolone in patients with mitochondrial myopathy
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Fernando Scaglia, Bruce H. Cohen, Zarazuela Zolkipli-Cunningham, Perry B. Shieh, Jerry Vockley, Colin Meyer, Megan O'Grady, Angela Goldsberry, Amel Karaa, Amy Goldstein, Mary Kay Koenig, Karen Lindhardt Madsen, Astrid Emilie Buch, John Vissing, Ronald G. Haller, Marni J. Falk, and Colleen C. Muraresku
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Adult ,Male ,0301 basic medicine ,NF-E2-Related Factor 2 ,Anti-Inflammatory Agents ,Placebo ,Article ,law.invention ,03 medical and health sciences ,0302 clinical medicine ,Double-Blind Method ,Mitochondrial myopathy ,Randomized controlled trial ,Heart Rate ,law ,Heart rate ,medicine ,Humans ,Lactic Acid ,Lead (electronics) ,Adverse effect ,Exercise ,Omaveloxolone ,Dose-Response Relationship, Drug ,business.industry ,Mitochondrial Myopathies ,Middle Aged ,medicine.disease ,Triterpenes ,Dose–response relationship ,Treatment Outcome ,030104 developmental biology ,Anesthesia ,Exercise Test ,Female ,Neurology (clinical) ,business ,Biomarkers ,030217 neurology & neurosurgery - Abstract
ObjectiveTo investigate the safety and efficacy of escalating doses of the semi-synthetic triterpenoid omaveloxolone in patients with mitochondrial myopathy.MethodsIn cohorts of 8–13, 53 participants were randomized double-blind to 12 weeks of treatment with omaveloxolone 5, 10, 20, 40, 80, or 160 mg, or placebo. Outcome measures were change in peak cycling exercise workload (primary), in 6-minute walk test (6MWT) distance (secondary), and in submaximal exercise heart rate and plasma lactate (exploratory).ResultsNo differences in peak workload or 6MWT were observed at week 12 with omaveloxolone treatment vs placebo for all omaveloxolone dose groups. In contrast, omaveloxolone 160 mg reduced heart rate at week 12 by 12.0 ± 4.6 bpm (SE) during submaximal exercise vs placebo, p = 0.01, and by 8.7 ± 3.5 bpm (SE) vs baseline, p = 0.02. Similarly, blood lactate was 1.4 ± 0.7 mM (SE) lower vs placebo, p = 0.04, and 1.6 ± 0.5 mM (SE) lower vs baseline at week 12, p = 0.003, with omaveloxolone 160 mg treatment. Adverse events were generally mild and infrequent.ConclusionsOmaveloxolone 160 mg was well-tolerated, and did not lead to change in the primary outcome measure, but improved exploratory endpoints lowering heart rate and lactate production during submaximal exercise, consistent with improved mitochondrial function and submaximal exercise tolerance. Therefore, omaveloxolone potentially benefits patients with mitochondrial myopathy, which encourages further investigations of omaveloxolone in this patient group.Clinicaltrials.gov identifierNCT02255422.Classification of evidenceThis study provides Class II evidence that, for patients with mitochondrial myopathy, omaveloxolone compared to placebo did not significantly change peak exercise workload.
- Published
- 2020
13. Effective Aspirin Treatment of Women at Risk for Preeclampsia Delays the Metabolic Clock of Gestation
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Sarah H. Elsea, Xiqi Li, Aleksandar Milosavljevic, Fernando Scaglia, Liona C. Poon, Kypros H. Nicolaides, Chi Chiu Wang, and Argyro Syngelaki
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0301 basic medicine ,Adult ,Physiology ,Gestational Age ,Preeclampsia ,03 medical and health sciences ,0302 clinical medicine ,Pre-Eclampsia ,Pregnancy ,Internal Medicine ,Medicine ,Humans ,chemistry.chemical_classification ,Aspirin ,Proteinuria ,business.industry ,Gestational age ,Metabolism ,medicine.disease ,030104 developmental biology ,chemistry ,030220 oncology & carcinogenesis ,Metabolome ,Gestation ,Female ,medicine.symptom ,business ,Polyunsaturated fatty acid ,medicine.drug - Abstract
Preeclampsia, characterized by the onset of hypertension with significant proteinuria after 20 weeks’ gestation, is one of the leading causes of maternal and perinatal morbidity and mortality. Prophylactic low-dose aspirin treatment reduces the rate of preterm preeclampsia in high-risk women, but a significant proportion still develops preeclampsia. The mechanism of the prophylactic response is unknown. Here, the untargeted metabolomics analysis of 144 plasma samples from high-risk pregnant women before (11–13 weeks) and after (20–23 weeks) aspirin/placebo treatment elucidated metabolic effects of aspirin and metabolic differences potentially associated with the variation of the treatment response. We demonstrated that aspirin treatment resulted in a strong drug-associated metabolomics signature and that the preeclamptic or nonpreeclamptic outcome in response to treatment was significantly associated with the level of internal aspirin exposure ascertained from metabolomics data ( t test, P =0.0083). Comparing women with and without preeclampsia after aspirin treatment, differences in 73 metabolites were detected, some of which involve pathways whose regulation is of importance in pregnancy and placental functions, such as glycerophospholipids metabolism, polyunsaturated fatty acid metabolism, and steroid hormone biosynthesis. To further examine the hypothesis that aspirin delays gestational age advancement and thus the onset of preeclampsia, we constructed a metabolic clock on pretreatment and placebo-treated samples that estimated gestational age with high accuracy and found that aspirin significantly decelerated metabolic gestational age by 1.27 weeks (95% CI, 0.66–1.88 weeks), and partially reversed one-fourth of the metabolites changed over gestational age advancement, suggesting that aspirin treatment slowed down the metabolic clock of gestation.
- Published
- 2021
14. Untargeted metabolomic profiling reveals multiple pathway perturbations and new clinical biomarkers in urea cycle disorders
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William J. Craigen, Brett H. Graham, Sarah H. Elsea, Brendan Lee, Sandesh C.S. Nagamani, Lillian R. Thistlethwaite, Qin Sun, Adam D. Kennedy, V. Reid Sutton, Aleksandar Milosavljevic, Bridget M. Stroup, Fernando Scaglia, Marcus J. Miller, and Lindsay C. Burrage
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Adult ,Male ,arginase deficiency ,Adolescent ,Urea cycle disorder ,Metabolite ,Computational biology ,Mass Spectrometry ,Article ,Young Adult ,guanidino compounds ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Metabolomics ,medicine ,Humans ,Urea ,branched-chain amino acids ,Child ,Urea Cycle Disorders, Inborn ,Genetics (clinical) ,urea cycle disorder ,030304 developmental biology ,0303 health sciences ,business.industry ,Pathway analysis ,medicine.disease ,Human genetics ,3. Good health ,Arginase ,Metabolomic profiling ,chemistry ,Child, Preschool ,Urea cycle ,Female ,business ,Biomarkers ,Metabolic Networks and Pathways ,Metabolism, Inborn Errors ,030217 neurology & neurosurgery - Abstract
Purpose: Untargeted metabolomic analysis is increasingly being used in the screening and management of individuals with inborn errors of metabolism (IEM). We aimed to test whether untargeted metabolomic analysis in plasma might be useful for monitoring the disease course and management of urea cycle disorders (UCDs). Methods: Untargeted mass spectrometry-based metabolomic analysis was used to generate z-scores for more than 900 metabolites in plasma from 48 individuals with various UCDs. Pathway analysis was used to identify common pathways that were perturbed in each UCD. Results: Our metabolomic analysis in plasma identified multiple potentially neurotoxic metabolites of arginine in arginase deficiency and, thus, may have utility in monitoring the efficacy of treatment in arginase deficiency. In addition, we were also able to detect multiple biochemical perturbations in all UCDs that likely reflect clinical management, including metabolite alterations secondary to dietary and medication management. Conclusions: In addition to utility in screening for IEM, our results suggest that untargeted metabolomic analysis in plasma may be beneficial for monitoring efficacy of clinical management and off-target effects of medications in UCDs and potentially other IEM.
- Published
- 2019
15. Biallelic variants in COX4I1 associated with a novel phenotype resembling Leigh syndrome with developmental regression, intellectual disability, and seizures
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Nishitha R. Pillai, Brett H. Graham, Noura S. AlDhaheri, Sarah H. Elsea, Anuranjita Nayak, Fernando Scaglia, Rajarshi Ghosh, Jaehyung Lim, Haley Streff, and Neil A. Hanchard
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Male ,Mitochondrial disease ,Encephalopathy ,Biology ,Short stature ,Electron Transport ,Electron Transport Complex IV ,Seizures ,Fanconi anemia ,Intellectual Disability ,Genetics ,medicine ,Humans ,Cytochrome c oxidase ,Child ,Alleles ,Genetics (clinical) ,medicine.disease ,Hypotonia ,COX4I1 ,Phenotype ,Child, Preschool ,Mutation ,biology.protein ,Leigh Disease ,medicine.symptom ,Developmental regression - Abstract
Autosomal recessive COX4I1 deficiency has been previously reported in a single individual with a homozygous pathogenic variant in COX4I1, who presented with short stature, poor weight gain, dysmorphic features, and features of Fanconi anemia. COX4I1 encodes subunit 4, isoform 1 of cytochrome c oxidase. Cytochrome c oxidase is a respiratory chain enzyme that plays an important role in mitochondrial electron transport and reduces molecular oxygen to water leading to the formation of ATP. Defective production of cytochrome c oxidase leads to a variable phenotypic spectrum ranging from isolated myopathy to Leigh syndrome. Here, we describe two siblings, born to consanguineous parents, who presented with encephalopathy, developmental regression, hypotonia, pathognomonic brain imaging findings resembling Leigh-syndrome, and a novel homozygous variant on COX4I1, expanding the known clinical phenotype associated with pathogenic variants in COX4I1.
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- 2019
16. TRMU deficiency: a broad clinical spectrum responsive to cysteine supplementation
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Danielle Monteil, Rebecca D. Ganetzky, Carmencita D. Padilla, Claudia Soler-Alfonso, Fernando Scaglia, Kathleen M. Loomes, Amit A. Shah, and Chaya N. Murali
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0301 basic medicine ,Male ,Mitochondrial DNA ,Methyltransferase ,Endocrinology, Diabetes and Metabolism ,Cardiomyopathy ,Disease ,030105 genetics & heredity ,Hypoglycemia ,Bioinformatics ,Biochemistry ,DNA, Mitochondrial ,Article ,Mitochondrial Proteins ,03 medical and health sciences ,0302 clinical medicine ,Endocrinology ,RNA, Transfer ,Genetics ,medicine ,Humans ,Cysteine ,Myopathy ,Molecular Biology ,tRNA Methyltransferases ,business.industry ,Infant ,Translation (biology) ,medicine.disease ,Acetylcysteine ,Liver Transplantation ,Mitochondria ,Protein Biosynthesis ,Persistent lactic acidosis ,Female ,medicine.symptom ,Leigh Disease ,business ,Acidosis ,030217 neurology & neurosurgery ,Liver Failure - Abstract
TRMU is a nuclear gene crucial for mitochondrial DNA translation by encoding tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase, which thiolates mitochondrial tRNA. Biallelic pathogenic variants in TRMU are associated with transient infantile liver failure. Other less common presentations such as Leigh syndrome, myopathy, and cardiomyopathy have been reported. Recent studies suggested that provision of exogenous L-cysteine or N-acetylcysteine may ameliorate the effects of disease-causing variants and improve the natural history of the disease. Here, we report six infants with biallelic TRMU variants, including four previously unpublished patients, all treated with exogenous cysteine. We highlight the first report of an affected patient undergoing orthotopic liver transplantation, the long-term effects of cysteine supplementation, and the ability of the initial presentation to mimic multiple inborn errors of metabolism. We propose that TRMU deficiency should be suspected in all children presenting with persistent lactic acidosis and hypoglycemia, and that combined N-acetylcysteine and L-cysteine supplementation should be considered prior to molecular diagnosis, as this is a low-risk approach that may increase survival and mitigate the severity of the disease course.
- Published
- 2021
17. Mitochondrial energetic impairment in a patient with late-onset glutaric acidemia Type 2
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Jerry Vockley, Shrabani Basu, Yudong Wang, Kimberly A. Chapman, Changrui Xiao, Carlos Ferreira, Esteban Astiazaran-Symonds, Monisha S. Kisling, and Fernando Scaglia
- Subjects
Coenzyme Q10 ,medicine.medical_specialty ,Ubiquinol ,biology ,Exercise intolerance ,Mitochondrion ,Electron-transferring flavoprotein ,Article ,chemistry.chemical_compound ,Endocrinology ,chemistry ,Internal medicine ,Genetics ,medicine ,biology.protein ,Carnitine ,medicine.symptom ,Multiple Acyl-CoA Dehydrogenase Deficiency ,Beta oxidation ,Genetics (clinical) ,medicine.drug - Abstract
Glutaric acidemia type 2 (GA2), also called multiple acyl-CoA dehydrogenase deficiency, is an autosomal recessive disorder of fatty acid, amino acid, and choline metabolism resulting in excretion of multiple organic acids and glycine conjugates as well as elevation of various plasma acylcarnitine species (C4–C18). It is caused by mutations in the ETFA, ETFB, or ETFDH genes which are involved in the transfer of electrons from 11 flavin-containing dehydrogenases to Coenzyme Q(10) (CoQ(10)) of the mitochondrial electron transport chain (ETC). We report a patient who was originally reported as the first case with primary myopathic CoQ(10) deficiency when he presented at 11.5 years with exercise intolerance and myopathy that improved after treatment with ubiquinone and carnitine. At age 23, his symptoms relapsed despite increasing doses of ubiquinone and he was shown to have biallelic mutations in the ETFDH gene. Treatment with riboflavin was started and ubiquinone was changed to ubiquinol. After 4 months, the patient recovered his muscle strength with normalization of laboratory exams and exercise tolerance. Functional studies on fibroblasts revealed decreased levels of ETFDH as well as of very long-chain acyl-CoA dehydrogenase and trifunctional protein α. In addition, the mitochondrial mass was decreased, with increased formation of reactive oxygen species and oxygen consumption rate, but with a decreased spared respiratory capacity, and decreased adenosine triphosphate level. These findings of widespread dysfunction of fatty acid oxidation and ETC enzymes support the impairment of a larger mitochondrial ETC supercomplex in our patient.
- Published
- 2020
18. Phenotypic expansion in DDX3X - a common cause of intellectual disability in females
- Author
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Alper Gezdirici, Christine M. Eng, Shan Chen, John W. Belmont, Elif Yilmaz Gulec, James R. Lupski, Yi-Chien Lee, Mohammad K. Eldomery, Rui Xiao, Magalie S. Leduc, Donna M. Muzny, Jennifer E. Posey, Fernando Scaglia, Zeynep Coban Akdemir, Jill A. Rosenfeld, Xia Wang, Francesco Vetrini, Michael M. Khayat, Richard A. Gibbs, Magdalena Walkiewicz, LaDonna Immken, Lionel Van Maldergem, Paolo Moretti, Theresa Mihalic Mosher, Yaping Yang, Anne Slavotinek, Brendan Lee, Jill M. Harris, Fan Xia, Weimin He, Adam W. Hansen, Pengfei Liu, Carlos A. Bacino, Yunru Shao, Yunyun Jiang, Davut Pehlivan, Neil A. Hanchard, Juliette Piard, Jing Zhang, Sandra Darilek, Brett H. Graham, Weimin Bi, Adekunle M. Adesina, Scott E. Hickey, and Joke Beuten
- Subjects
0301 basic medicine ,Mitochondrial DNA ,Fetus ,Heart disease ,business.industry ,General Neuroscience ,Dna variants ,medicine.disease ,Bioinformatics ,Phenotype ,3. Good health ,03 medical and health sciences ,030104 developmental biology ,Intellectual disability ,medicine ,Neurology (clinical) ,Neurologic decline ,DDX3X ,business - Abstract
De novo variants in DDX3X account for 1-3% of unexplained intellectual disability (ID) cases and are amongst the most common causes of ID especially in females. Forty-seven patients (44 females, 3 males) have been described. We identified 31 additional individuals carrying 29 unique DDX3X variants, including 30 postnatal individuals with complex clinical presentations of developmental delay or ID, and one fetus with abnormal ultrasound findings. Rare or novel phenotypes observed include respiratory problems, congenital heart disease, skeletal muscle mitochondrial DNA depletion, and late-onset neurologic decline. Our findings expand the spectrum of DNA variants and phenotypes associated with DDX3X disorders.
- Published
- 2018
19. Molecular and clinical characterization of citrin deficiency in a cohort of Chinese patients in Hong Kong
- Author
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P. Lo, L. Yuen, J. Hui, S.C. Chong, T.Y. Leung, Fernando Scaglia, Winnie C.W. Chu, and C.W. Chow
- Subjects
0301 basic medicine ,Pediatrics ,medicine.medical_specialty ,Disease ,03 medical and health sciences ,Endocrinology ,Cholestasis ,Genetics ,medicine ,Molecular Biology ,lcsh:QH301-705.5 ,Genetic testing ,Newborn screening ,lcsh:R5-920 ,medicine.diagnostic_test ,business.industry ,Retrospective cohort study ,Jaundice ,medicine.disease ,030104 developmental biology ,lcsh:Biology (General) ,CTLN2 ,Hepatocellular carcinoma ,Cohort ,Hemangioendothelioma ,Citrin deficiency ,FTTDCD ,medicine.symptom ,NICCD ,business ,lcsh:Medicine (General) ,Research Paper - Abstract
Background and objectives: This retrospective study analysed a case series of subjects with citrin deficiency, and aims to present the molecular and clinical characterization of this disease in the Hong Kong Chinese population for the first time. Patients and Methods: Data from medical records of eighteen patients with citrin deficiency (years 2006–2015) were retrieved. Demographic data, biochemical parameters, radiological results, genetic testing results, management, and clinical outcome were collected and analysed. Results: Eighteen patients with diagnosis of citrin deficiency were recruited. All 18 patients carried at least one common pathogenic variant c.852_855delTATG in SLC25A13. Prolonged jaundice (neonatal intrahepatic cholestasis caused by citrin deficiency, NICCD) was the most common presenting symptom, in conjunction with elevated plasma citrulline, threonine, alkaline phosphatase, and alpha-fetoprotein levels. The abnormal biochemical parameters including liver derangement returned to normal range in most of the cases by 6 months of age after the introduction of a lactose-free formula. There were a few cases with atypical presentations. Two subjects did not present with NICCD, and were subsequently diagnosed later in life after their siblings presented with symptoms of citrin deficiency at one month of age and subsequently received a molecular diagnosis. One patient with citrin deficiency also exhibited multiple liver hemangioendotheliomas, which subsided gradually after introduction of a lactose-free formula. Only one patient from this cohort was offered expanded metabolic screening at birth. She was not ascertained by conducted newborn screening and was diagnosed upon presentation with cholestatic jaundice by 1 month of age. Conclusion: This is the first report of the clinical and molecular characterization of a large cohort of patients with citrin deficiency in Hong Kong. The presentation of this cohort of patients expands the clinical phenotypic spectrum of NICCD. Benign liver tumors such as hemangioendotheliomas may be associated with citrin deficiency in addition to the well-known association with hepatocellular carcinoma. Citrin deficiency may manifest in later infancy period with an NICCD-like phenotype. Furthermore, this condition is not always ascertained by expanded newborn metabolic screening testing. Keywords: Citrin deficiency, NICCD, FTTDCD, CTLN2, Hemangioendothelioma
- Published
- 2018
20. Characterization of the renal phenotype in RMND1‐related mitochondrial disease
- Author
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Fernando Scaglia, Mir Reza Bekheirnia, Michael C. Braun, Michael L. Moritz, Jill A. Rosenfeld, Dolores J. Lamb, Brian J. Shayota, Nhon Thanh Le, Fan Xia, Amy Goldstein, Yaping Yang, Matthew Pastore, Christine M. Eng, Dennis Bartholomew, and Nasim Bekheirnia
- Subjects
0301 basic medicine ,Male ,Pathology ,medicine.medical_specialty ,Mitochondrial Diseases ,Adolescent ,lcsh:QH426-470 ,Mitochondrial disease ,Interstitial nephritis ,Cell Cycle Proteins ,030105 genetics & heredity ,Meiotic nuclear division ,Renal tubular acidosis ,03 medical and health sciences ,Tubulopathy ,Genetics ,Medicine ,Humans ,Child ,Molecular Biology ,Genetics (clinical) ,RMND1 ,medicine.diagnostic_test ,business.industry ,Original Articles ,renal transplantation ,medicine.disease ,3. Good health ,Transplantation ,lcsh:Genetics ,030104 developmental biology ,Phenotype ,Mutation ,Female ,Kidney Diseases ,Original Article ,Renal biopsy ,RNA Splice Sites ,business ,chronic kidney disease ,Kidney disease - Abstract
Background The nuclear encoded gene RMND1 (Required for Meiotic Nuclear Division 1 homolog) has recently been linked to RMND1‐related mitochondrial disease (RRMD). This autosomal recessive condition characteristically presents with an infantile‐onset multisystem disease characterized by severe hypotonia, global developmental delay, failure to thrive, sensorineural hearing loss, and lactic acidosis. Renal disease, however, appears to be one of the more prominent features of RRMD, affecting patients at significantly higher numbers compared to other mitochondrial diseases. We report the clinical, histological, and molecular findings of four RRMD patients across three academic institutions with a focus on the renal manifestations. Methods Four patients were identified for the purpose of this study, all of whom had molecular confirmation at the time of inclusion, which included the common pathogenic variant c.713A>G (p.N238S) as well as the three rare variants: c.485delC (p.P162fs), c.533C>T (p.T178M), and c.1317 + 1G>C splice donor variant. Medical history and laboratory findings were collected from the medical records and medical providers. Results In this study, all four patients developed renal disease characterized as tubulopathy (3/4), renal tubular acidosis (2/4), interstitial nephritis (1/4), and/or end‐stage renal disease (4/4) necessitating renal transplantation (2/4). Histological evaluation of renal biopsy specimens revealed generalized tubular atrophy and on electron microscopy, abundant mitochondria with pleomorphism and abnormal cristae. Conclusion Our experience with RRMD demonstrates a specific pattern of renal disease manifestations and clinical course. Patients are unlikely to respond to traditional chronic kidney disease (CKD) treatments, making early diagnosis and consideration of renal transplantation paramount to the management of RRMD., RMND1‐related mitochondrial disease (RRMD) is a complex mitochondrial condition that has a particularly high risk of severe and early‐onset renal disease compared to other mitochondrial disorders. In this study of four patients, we have shown that the clinical phenotype may include tubulopathy (3/4), renal tubular acidosis (2/4), interstitial nephritis (1/4), and/or end‐stage renal disease (ESRD) necessitating renal transplantation (4/4). Additionally, patients are unlikely to respond to traditional chronic kidney disease (CKD) treatments, making early diagnosis and consideration of renal transplantation paramount to the management of RRMD.
- Published
- 2019
21. LIPT1 deficiency presenting as early infantile epileptic encephalopathy, Leigh disease, and secondary pyruvate dehydrogenase complex deficiency
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Robert C. Stowe, Sarah H. Elsea, Fernando Scaglia, and Qin Sun
- Subjects
Male ,0301 basic medicine ,Genotype ,Hyperglycinemia ,Diagnosis, Differential ,03 medical and health sciences ,chemistry.chemical_compound ,Exome Sequencing ,Genetics ,Humans ,Medicine ,Leigh disease ,Pyruvate Dehydrogenase Complex Deficiency Disease ,Alleles ,Genetic Association Studies ,Genetics (clinical) ,Exome sequencing ,Glycine cleavage system ,business.industry ,Brain ,Infant ,Electroencephalography ,Pyruvate dehydrogenase complex ,medicine.disease ,Magnetic Resonance Imaging ,Pyruvate dehydrogenase deficiency ,Lipoic acid ,Phenotype ,030104 developmental biology ,chemistry ,Immunology ,Leigh Disease ,business ,Severe lactic acidosis ,Spasms, Infantile ,Acyltransferases ,Biomarkers - Abstract
Lipoic acid is an essential cofactor for the mitochondrial 2-ketoacid dehydrogenase complexes and the glycine cleavage system. Lipoyltransferase 1 catalyzes the covalent attachment of lipoate to these enzyme systems. Pathogenic variants in LIPT1 gene have recently been described in four patients from three families, commonly presenting with severe lactic acidosis resulting in neonatal death and/or poor neurocognitive outcomes. We report a 2-month-old male with severe lactic acidosis, refractory status epilepticus, and brain imaging suggestive of Leigh disease. Exome sequencing implicated compound heterozygous LIPT1 pathogenic variants. We describe the fifth case of LIPT1 deficiency, whose phenotype progressed to that of an early infantile epileptic encephalopathy, which is novel compared to previously described patients whom we will review. Due to the significant biochemical and phenotypic overlap that LIPT1 deficiency and mitochondrial energy cofactor disorders have with pyruvate dehydrogenase deficiency and/or nonketotic hyperglycinemia, they are and have been presumptively under-diagnosed without exome sequencing.
- Published
- 2018
22. Genotype-phenotype correlations in individuals with pathogenicREREvariants
- Author
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John A. Bernat, Elliott H. Sherr, Weimin Bi, Tugce B. Balci, Ronald J. Wapner, Jessica L. Giordano, Jill A. Rosenfeld, Donna M. Martin, Brieana Fregeau, Valerie K. Jordan, Annika M. Dries, Amanda Moccia, Colette DeFilippo, Jennefer N. Kohler, Yaping Yang, Vincent Cantagrel, Andrea M. Lewis, Willa Thorson, Xiaoyan Ge, Anshika Srivastava, Stephanie L. Bielas, Jonathan A. Bernstein, Melissa T. Carter, Marlène Rio, Nathalie Boddaert, John Pappas, Melissa D. Svoboda, Fernando Scaglia, and Daryl A. Scott
- Subjects
Male ,0301 basic medicine ,Adolescent ,Biology ,1p36 deletion syndrome ,Article ,genotype–phenotype correlations ,CHD7 ,Young Adult ,03 medical and health sciences ,CHARGE syndrome ,Fatal Outcome ,Neurodevelopmental disorder ,Gene duplication ,RERE ,Genetics ,medicine ,Humans ,Gene ,Genetic Association Studies ,Genetics (clinical) ,Point mutation ,Infant ,medicine.disease ,Phenotype ,030104 developmental biology ,Child, Preschool ,Mutation ,Female ,Carrier Proteins ,NEDBEH ,Haploinsufficiency - Abstract
Heterozygous variants in the arginine-glutamic acid dipeptide repeats gene (RERE) have been shown to cause neurodevelopmental disorder with or without anomalies of the brain, eye, or heart (NEDBEH). Here, we report nine individuals with NEDBEH who carry partial deletions or deleterious sequence variants in RERE. These variants were found to be de novo in all cases in which parental samples were available. An analysis of data from individuals with NEDBEH suggests that point mutations affecting the Atrophin-1 domain of RERE are associated with an increased risk of structural eye defects, congenital heart defects, renal anomalies, and sensorineural hearing loss when compared with loss-of-function variants that are likely to lead to haploinsufficiency. A high percentage of RERE pathogenic variants affect a histidine-rich region in the Atrophin-1 domain. We have also identified a recurrent two-amino-acid duplication in this region that is associated with the development of a CHARGE syndrome-like phenotype. We conclude that mutations affecting RERE result in a spectrum of clinical phenotypes. Genotype–phenotype correlations exist and can be used to guide medical decision making. Consideration should also be given to screening for RERE variants in individuals who fulfill diagnostic criteria for CHARGE syndrome but do not carry pathogenic variants in CHD7.
- Published
- 2018
23. Reanalysis of Clinical Exome Sequencing Data
- Author
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V. Reid Sutton, Fan Xia, Jonathan A. Bernstein, Jill A. Rosenfeld, Donna M. Muzny, Christian P. Schaaf, Francesco Vetrini, Pedro Mancias, Luis F. Escobar, Chad A. Shaw, Marvin R. Natowicz, Deanna J. Erwin, Richard A. Gibbs, Linyan Meng, Alicia Braxton, Karen W. Gripp, Seema R. Lalani, James R. Lupski, Patricia A. Ward, Jennifer E. Posey, Haley Streff, Charul Gijavanekar, Yasemen Eroglu, Andrea M. Lewis, Jie Dong, Arthur L. Beaudet, Hilary J. Vernon, Christine M. Eng, Hongzheng Dai, Pilar L. Magoulas, Weimin Bi, La Keesha Minor, Fernando Scaglia, Andrew R. Ghazi, Yaping Yang, Elizabeth A. Normand, Nan Wu, Theodore Chiang, Xiaofei Song, Mary Kay Koenig, Soledad Kleppe, Weimin He, Hanyin Cheng, Crescenda L. Uhles, Paul J. Benke, Rui Xiao, Elaine H. Zackai, James B. Gibson, Tanya N. Eble, Bo Yuan, Pengfei Liu, and Xia Wang
- Subjects
business.industry ,Genetic Diseases, Inborn ,Sequence Analysis, DNA ,General Medicine ,Computational biology ,030204 cardiovascular system & hematology ,Article ,03 medical and health sciences ,Phenotype ,0302 clinical medicine ,Mutation ,Exome Sequencing ,Mutation (genetic algorithm) ,Humans ,Medicine ,Exome ,Genetic Testing ,030212 general & internal medicine ,business ,Exome sequencing - Abstract
Reanalysis of Clinical Exome Data and Diagnostic Yield As knowledge about genetic causes of disease improves, periodic reanalysis of clinical exome sequence could yield new genetic information. Thi...
- Published
- 2019
24. A Recurrent De Novo Variant in NACC1 Causes a Syndrome Characterized by Infantile Epilepsy, Cataracts, and Profound Developmental Delay
- Author
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Kelly Schoch, Linyan Meng, Szabolcs Szelinger, David R. Bearden, Asbjorg Stray-Pedersen, Oyvind L. Busk, Nicholas Stong, Eriskay Liston, Ronald D. Cohn, Fernando Scaglia, Jill A. Rosenfeld, Jennifer Tarpinian, Cara M. Skraban, Matthew A. Deardorff, Jeremy N. Friedman, Zeynep Coban Akdemir, Nicole Walley, Mohamad A. Mikati, Peter G. Kranz, Joan Jasien, Allyn McConkie-Rosell, Marie McDonald, Stephanie Burns Wechsler, Michael Freemark, Sujay Kansagra, Sharon Freedman, Deeksha Bali, Francisca Millan, Sherri Bale, Stanley F. Nelson, Hane Lee, Naghmeh Dorrani, David B. Goldstein, Rui Xiao, Yaping Yang, Jennifer E. Posey, Julian A. Martinez-Agosto, James R. Lupski, Michael F. Wangler, Vandana Shashi, Wayne W. Grody, Samuel P. Strom, Eric Vilain, Joshua Deignan, Fabiola Quintero-Rivera, Sibel Kantarci, Sureni Mullegama, Sung-Hae Kang, Mercedes E. Alejandro, Carlos A. Bacino, Ashok Balasubramanyam, Lindsay C. Burrage, Gary D. Clark, William J. Craigen, Shweta U. Dhar, Lisa T. Emrick, Brett H. Graham, Neil A. Hanchard, Mahim Jain, Seema R. Lalani, Brendan H. Lee, Richard A. Lewis, Azamian S. Mashid, Paolo M. Moretti, Sarah K. Nicholas, Jordan S. Orange, Lorraine Potocki, Daryl A. Scott, Alyssa A. Tran, Hugo J. Bellen, Shinya Yamamoto, Christine M. Eng, Donna M. Muzny, Patricia A. Ward, Andrea L. Gropman, Yong-hui Jiang, Loren D.M. Pena, Rebecca C. Spillmann, Jennifer A. Sullivan, Nicole M. Walley, Alan H. Beggs, Lauren C. Briere, Cynthia M. Cooper, Laurel A. Donnell-Fink, Elizabeth L. Krieg, Joel B. Krier, Sharyn A. Lincoln, Joseph Loscalzo, Richard L. Maas, Calum A. MacRae, J. Carl Pallais, Lance H. Rodan, Edwin K. Silverman, Joan M. Stoler, David A. Sweetser, Chris A. Walsh, Cecilia Esteves, Ingrid A. Holm, Isaac S. Kohane, Paul Mazur, Alexa T. McCray, Matthew Might, Rachel B. Ramoni, Kimberly Splinter, David P. Bick, Camille L. Birch, Braden E. Boone, Donna M. Brown, Dan C. Dorset, Lori H. Handley, Howard J. Jacob, Angela L. Jones, Jozef Lazar, Shawn E. Levy, J. Scott Newberry, Molly C. Schroeder, Kimberly A. Strong, Elizabeth A. Worthey, Jyoti G. Dayal, David J. Eckstein, Sarah E. Gould, Ellen M. Howerton, Donna M. Krasnewich, Carson R. Loomis, Laura A. Mamounas, Teri A. Manolio, John J. Mulvihill, Anastasia L. Wise, Ariane G. Soldatos, Matthew Brush, Jean-Philippe F. Gourdine, Melissa Haendel, David M. Koeller, Jennifer E. Kyle, Thomas O. Metz, Katrina M. Waters, Bobbie-Jo M. Webb-Robertson, Euan A. Ashley, Jonathan A. Bernstein, Annika M. Dries, Paul G. Fisher, Jennefer N. Kohler, Daryl M. Waggott, Matt T. Wheeler, Patricia A. Zornio, Patrick Allard, Hayk Barseghyan, Esteban C. Dell’Angelica, Katrina M. Dipple, Matthew R. Herzog, Stan F. Nelson, Christina G.S. Palmer, Jeanette C. Papp, Janet S. Sinsheimer, Christopher J. Adams, Elizabeth A. Burke, Katherine R. Chao, Mariska Davids, David D. Draper, Tyra Estwick, Trevor S. Frisby, Kate Frost, Valerie Gartner, Rena A. Godfrey, Mitchell Goheen, Gretchen A. Golas, Mary 'Gracie' G. Gordon, Catherine A. Groden, Mary E. Hackbarth, Isabel Hardee, Jean M. Johnston, Alanna E. Koehler, Lea Latham, Yvonne L. Latour, C. Christopher Lau, Denise J. Levy, Adam P. Liebendorder, Ellen F. Macnamara, Valerie V. Maduro, Thomas C. Markello, Alexandra J. McCarty, Jennifer L. Murphy, Michele E. Nehrebecky, Donna Novacic, Barbara N. Pusey, Sarah Sadozai, Katherine E. Schaffer, Prashant Sharma, Sara P. Thomas, Nathanial J. Tolman, Camilo Toro, Zaheer M. Valivullah, Colleen E. Wahl, Mike Warburton, Alec A. Weech, Guoyun Yu, David R. Adams, William A. Gahl, May Christine V. Malicdan, Cynthia J. Tifft, Lynne A. Wolfe, Paul R. Lee, John H. Postlethwait, Monte Westerfield, Anna Bican, Rizwan Hamid, John H. Newman, John A. Phillips, Amy K. Robertson, and Joy D. Cogan
- Subjects
Male ,0301 basic medicine ,Microcephaly ,Mutation, Missense ,Biology ,Cataract ,Germline ,03 medical and health sciences ,Neurodevelopmental disorder ,Cataracts ,Report ,Intellectual Disability ,Intellectual disability ,Genetics ,medicine ,Humans ,Missense mutation ,Amino Acid Sequence ,Child ,Alleles ,Genetics (clinical) ,Cerebral atrophy ,Brain ,Genetic Variation ,Infant ,medicine.disease ,Magnetic Resonance Imaging ,Neoplasm Proteins ,Pedigree ,3. Good health ,Repressor Proteins ,Phenotype ,030104 developmental biology ,Child, Preschool ,Failure to thrive ,Female ,medicine.symptom ,Spasms, Infantile ,Genome-Wide Association Study - Abstract
Whole-exome sequencing (WES) has increasingly enabled new pathogenic gene variant identification for undiagnosed neurodevelopmental disorders and provided insights into both gene function and disease biology. Here, we describe seven children with a neurodevelopmental disorder characterized by microcephaly, profound developmental delays and/or intellectual disability, cataracts, severe epilepsy including infantile spasms, irritability, failure to thrive, and stereotypic hand movements. Brain imaging in these individuals reveals delay in myelination and cerebral atrophy. We observe an identical recurrent de novo heterozygous c.892C>T (p.Arg298Trp) variant in the nucleus accumbens associated 1 ( NACC1 ) gene in seven affected individuals. One of the seven individuals is mosaic for this variant. NACC1 encodes a transcriptional repressor implicated in gene expression and has not previously been associated with germline disorders. The probability of finding the same missense NACC1 variant by chance in 7 out of 17,228 individuals who underwent WES for diagnoses of neurodevelopmental phenotypes is extremely small and achieves genome-wide significance (p = 1.25 × 10 −14 ). Selective constraint against missense variants in NACC1 makes this excess of an identical missense variant in all seven individuals more remarkable. Our findings are consistent with a germline recurrent mutational hotspot associated with an allele-specific neurodevelopmental phenotype in NACC1 .
- Published
- 2017
25. Liver Transplantation in Propionic and Methylmalonic Acidemia: A Single Center Study with Literature Review
- Author
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Lindsay C. Burrage, V. Reid Sutton, Nishitha R. Pillai, Hari Priya Tunuguntala, Brandy Rawls, John A. Goss, Bridget M. Stroup, Fernando Scaglia, Ryan Himes, Brian J. Shayota, Claudia Soler-Alfonso, Anna D. Poliner, Linda Z. Rossetti, and William J. Craigen
- Subjects
0301 basic medicine ,medicine.medical_specialty ,Propionic Acidemia ,Adolescent ,Genotype ,Endocrinology, Diabetes and Metabolism ,medicine.medical_treatment ,Methylmalonic acidemia ,030105 genetics & heredity ,Liver transplantation ,Biochemistry ,Gastroenterology ,Article ,03 medical and health sciences ,0302 clinical medicine ,Endocrinology ,Liver Function Tests ,Internal medicine ,Genetics ,medicine ,Humans ,Propionic acidemia ,Child ,Molecular Biology ,Survival rate ,Amino Acid Metabolism, Inborn Errors ,Alleles ,Retrospective Studies ,business.industry ,Infant, Newborn ,Infant ,Hyperammonemia ,Metabolic acidosis ,medicine.disease ,Prognosis ,Magnetic Resonance Imaging ,Liver Transplantation ,Transplantation ,Hospitalization ,Phenotype ,Organic acidemia ,Child, Preschool ,Mutation ,business ,030217 neurology & neurosurgery ,Biomarkers ,Follow-Up Studies - Abstract
Background Organic acidemias, especially propionic acidemia (PA) and methylmalonic acidemia (MMA), may manifest clinically within the first few hours to days of life. The classic presentation in the newborn period includes metabolic acidosis, hyperlactatemia, and hyperammonemia that is precipitated by unrestricted protein intake. Implementation of newborn screening to diagnose and initiate early treatment has facilitated a reduction in neonatal mortality and improved survival. Despite early diagnosis and appropriate management, these individuals are prone to have recurrent episodes of metabolic acidosis and hyperammonemia resulting in frequent hospitalizations. Liver transplantation (LT) has been proposed as a treatment modality to reduce metabolic decompensations which are not controlled by medical management. Published reports on the outcome of LT show heterogeneous results regarding clinical and biochemical features in the post transplantation period. As a result, we evaluated the outcomes of LT in our institution and compared it to the previously published data. Study design/methods We performed a retrospective chart review of nine individuals with PA or MMA who underwent LT and two individuals with MMA who underwent LT and kidney transplantation (KT). Data including number of hospitalizations, laboratory measures, cardiac and neurological outcomes, dietary protein intake, and growth parameters were collected. Results The median age of transplantation for subjects with MMA was 7.2 years with a median follow up of 4.3 years. The median age of transplantation for subjects with PA was 1.9 years with a median follow up of 5.4 years. The survival rate at 1 year and 5 years post-LT was 100%. Most of our subjects did not have any episodes of hyperammonemia or pancreatitis post-LT. There was significant reduction in plasma glycine post-LT. One subject developed mild elevation in ammonia post-LT on an unrestricted protein diet, suggesting that protein restriction may be indicated even after LT. Conclusion In a large single center study of LT in MMA and PA, we show that LT may reduce the incidence of metabolic decompensation. Moreover, our data suggest that LT may be associated with reduced number of hospitalizations and improved linear growth in individuals with PA and MMA.
- Published
- 2019
26. Successful liver transplantation in mitochondrial neurogastrointestinal encephalomyopathy (MNGIE)
- Author
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William E. Berquist, Kimberly A. Kripps, David Cristin, Michio Hirano, Rowland W Pettit, Michael L. Kueht, Natalia Gomez-Ospina, Sarah H. Elsea, Austin Larson, Brian J. Shayota, Lisa Emrick, Fernando Scaglia, Carlos O. Esquivel, Youmna A. Sherif, Waldo Concepcion, Warapan Nakayuenyongsuk, Elizabeth A. Pomfret, Samuel Gilliland, Ryan Himes, Whitney E. Jackson, Gregory M. Enns, Jacinda B. Sampson, and Johan L.K. Van Hove
- Subjects
0301 basic medicine ,Adult ,Male ,medicine.medical_specialty ,Cirrhosis ,Adolescent ,Endocrinology, Diabetes and Metabolism ,medicine.medical_treatment ,Thymidine phosphorylase activity ,030105 genetics & heredity ,Liver transplantation ,Biochemistry ,Gastroenterology ,Article ,Leukoencephalopathy ,03 medical and health sciences ,Liver disease ,0302 clinical medicine ,Endocrinology ,Mitochondrial Encephalomyopathies ,Internal medicine ,Exome Sequencing ,Genetics ,medicine ,Humans ,Esophageal Motility Disorders ,Thymidine phosphorylase ,Molecular Biology ,Gastrointestinal dysmotility ,Thymidine Phosphorylase ,business.industry ,Hematopoietic Stem Cell Transplantation ,Infant ,Peripheral Nervous System Diseases ,medicine.disease ,Magnetic Resonance Imaging ,Liver Transplantation ,Mitochondria ,Peripheral neuropathy ,Female ,business ,030217 neurology & neurosurgery ,Thymidine - Abstract
Mitochondrial neurogastrointestinal encephalomyopathy (MNGIE) is a fatal disorder characterized by progressive gastrointestinal dysmotility, peripheral neuropathy, leukoencephalopathy, skeletal myopathy, ophthalmoparesis, and ptosis. MNGIE stems from deficient thymidine phosphorylase activity (TP) leading to toxic elevations of plasma thymidine. Hematopoietic stem cell transplant (HSCT) restores TP activity and halts disease progression but has high transplant-related morbidity and mortality. Liver transplant (LT) was reported to restore TP activity in two adult MNGIE patients. We report successful LT in four additional MNGIE patients, including a pediatric patient. Our patients were diagnosed between ages 14 months and 36 years with elevated thymidine levels and biallelic pathogenic variants in TYMP. Two patients presented with progressive gastrointestinal dysmotility, and three demonstrated progressive peripheral neuropathy with two suffering limitations in ambulation. Two patients, including the child, had liver dysfunction and cirrhosis. Following LT, thymidine levels nearly normalized in all four patients and remained low for the duration of follow-up. Disease symptoms stabilized in all patients, with some manifesting improvements, including intestinal function. No patient died, and LT appeared to have a more favorable safety profile than HSCT, especially when liver disease is present. Follow-up studies will need to document the long-term impact of this new approach on disease outcome. Take Home Message: Liver transplantation is effective in stabilizing symptoms and nearly normalizing thymidine levels in patients with mitochondrial neurogastrointestinal encephalomyopathy (MNGIE) and may have an improved safety profile over hematopoietic stem cell transplant.
- Published
- 2019
27. GNA11 brain somatic pathogenic variant in an individual with phacomatosis pigmentovascularis
- Author
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Satyamaanasa Polubothu, Yi-Shan Lee, Lindsay C. Burrage, Adekunle M. Adesina, Daniel J. Curry, Haley Streff, Dana Marafi, Sarah C. McGriff, Peyman Bizargity, Veronica A. Kinsler, Linda Z. Rossetti, Hongzheng Dai, Fernando Scaglia, Irfan Ali, Jill V. Hunter, Vicky Ren, Grace Lee, and Joseph M. Sliepka
- Subjects
0301 basic medicine ,Proband ,medicine.medical_specialty ,Pathology ,Status epilepticus ,Article ,03 medical and health sciences ,0302 clinical medicine ,Neuroimaging ,medicine ,Global developmental delay ,Genotyping ,Genetics (clinical) ,GNA11 ,business.industry ,3. Good health ,030104 developmental biology ,Histopathology ,Neurology (clinical) ,medicine.symptom ,business ,Quadrantectomy ,030217 neurology & neurosurgery - Abstract
ObjectiveTo describe the findings of histopathology and genotyping studies in affected brain tissue from an individual with phacomatosis pigmentovascularis (PPV).MethodsA retrospective chart review of a 2-year 10-month-old male with a clinical diagnosis of PPV cesiomarmorata (or type V) was performed. Clinical features, brain imaging and histopathology findings, and genotyping studies in his affected brain tissue are summarized.ResultsThe proband had a clinically severe neurologic phenotype characterized by global developmental delay, generalized hypotonia, and recurrent episodes of cardiac asystole in the setting of status epilepticus. A somatic pathogenic variant in GNA11 (c.547C>T, p.Arg183Cys) was detected in his skin tissue but not in blood (previously published). He underwent an urgent left posterior quadrantectomy for his life-threatening seizures. Histopathology of resected brain tissue showed an increase in leptomeningeal melanocytes and abnormal vasculature, and the exact pathogenic variant in GNA11 (c.547C>T, p.Arg183Cys), previously isolated from his skin tissue but not blood, was detected in his resected brain tissue.ConclusionsThe finding of this variant in affected skin and brain tissue of our patient with PPV supports a unifying genetic diagnosis of his neurocutaneous features.
- Published
- 2019
28. Multiple mitochondrial dysfunctions syndrome 1: An unusual cause of developmental pulmonary hypertension
- Author
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Suzanne Boyer, Fernando Scaglia, Sarah H. Elsea, Jason Laufman, Kevin E. Glinton, Natalie Villafranco, Csaba Galambos, Nidhy Varghese, Alona Birjiniuk, Daryl A. Scott, and Elizabeth Mizerik
- Subjects
Male ,Pediatrics ,medicine.medical_specialty ,Mitochondrial Diseases ,medicine.medical_treatment ,Developmental Disabilities ,Hypertension, Pulmonary ,Population ,Autopsy ,Disease ,Compound heterozygosity ,Multiple Mitochondrial Dysfunctions Syndrome ,Lung Disorder ,Genetics ,medicine ,Humans ,education ,Genetics (clinical) ,education.field_of_study ,business.industry ,Infant, Newborn ,medicine.disease ,Prognosis ,Pulmonary hypertension ,Mutation ,Female ,business ,Carrier Proteins ,Ketogenic diet - Abstract
Pulmonary hypertension (pHTN) is a severe, life-threatening disease, which can be idiopathic or associated with an underlying syndrome or genetic diagnosis. Here we discuss a patient who presented with severe pHTN and was later found to be compound heterozygous for pathogenic variants in the NFU1 gene causing multiple mitochondrial dysfunctions syndrome 1 (MMDS1). Review of autopsy slides from an older sibling revealed the same diagnosis along with pulmonary findings consistent with a developmental lung disorder. In particular, these postmortem, autopsy findings have not been described previously in humans with this mitochondrial syndrome and suggest a possible developmental basis for the severe pHTN seen in this disease. Given the rarity of patients reported with MMDS1, we review the current state of knowledge of this disease and our novel management strategies for pHTN and MMDS1-associated complications in this population.
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- 2019
29. Arginine and Citrulline for the Treatment of MELAS Syndrome
- Author
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Mohammed Almannai, Fernando Scaglia, and Ayman W. El-Hattab
- Subjects
0301 basic medicine ,Mitochondrial encephalomyopathy ,medicine.medical_specialty ,Arginine ,Endocrinology, Diabetes and Metabolism ,Mitochondrial disease ,Biology ,MELAS syndrome ,Article ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,encephalomyopathy ,Internal medicine ,medicine ,Citrulline ,stable isotope ,stroke-like episodes ,Myopathy ,nitric oxide (NO) ,Genetics (clinical) ,lcsh:R5-920 ,mitochondrial diseases ,Therapeutic effect ,medicine.disease ,lactic acidosis ,030104 developmental biology ,Endocrinology ,chemistry ,Lactic acidosis ,Pediatrics, Perinatology and Child Health ,medicine.symptom ,lcsh:Medicine (General) ,030217 neurology & neurosurgery - Abstract
Mitochondrial encephalomyopathy, lactic acidosis, and stroke-like episodes (MELAS) syndrome is a maternally inherited mitochondrial disease with a broad spectrum of manifestations. In addition to impaired energy production, nitric oxide (NO) deficiency occurs in MELAS syndrome and leads to impaired blood perfusion in microvasculature that can contribute to several complications including stroke-like episodes, myopathy, and lactic acidosis. The supplementation of NO precursors, L-arginine and L-citrulline, increases NO production and hence can potentially have therapeutic utility in MELAS syndrome. L-citrulline raises NO production to a greater extent than L-arginine; therefore, L-citrulline may have a better therapeutic effect. The clinical effect of L-citrulline has not yet been studied and clinical studies on L-arginine, which are limited, only evaluated the stroke-like episodes’ aspects of the disease. Controlled studies are still needed to assess the clinical effects of L-arginine and L-citrulline on different aspects of MELAS syndrome.
- Published
- 2019
30. SLC35A2-CDG: Functional Characterization, Expanded Molecular, Clinical, and Biochemical Phenotypes of 30 Unreported Individuals
- Author
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Jesse M. Hunter, Mary S. Willis, Bryce A. Mendelsohn, Sha Tang, Carlos A. Bacino, Eric Vilain, Hane Lee, Jill A. Rosenfeld, Delphine Héron, Tyler Mark Pierson, Zöe Powis, Shenela Lakhani, Naghmeh Dorrani, Lorenzo D. Botto, Maria J. Guillen Sacoto, Jaclyn Haven, Julie S. Cohen, Trine Bjørg Hammer, Bobby G. Ng, Charles Marques Lourenço, Rita Barone, Jennifer Burton, Ingrid E. Scheffer, Wendy G. Mitchell, Pasquale Striano, Stephanie Grunewald, Stanley F. Nelson, Nicola Longo, Jane Juusola, Fernando Scaglia, Christopher C.Y. Mak, Hudson H. Freeze, Shoji Yano, Leon G. Epstein, Arthur Partikian, Domenico Garozzo, Mohammed Almannai, Joy Lee, Hui Yang, Dianalee McKnight, Abdallah F. Elias, William A. Gahl, Nilika S. Singhal, Christina G.S. Palmer, Devorah Segal, Andrew C. Edmondson, George E. Hoganson, Cyril Mignot, Brian H.Y. Chung, Colleen M. Carlston, Mahim Jain, M. Elizabeth Ross, Paulina Sosicka, David Coman, Sharon F. Suchy, Shane C. Quinonez, Ghayda M. Mirzaa, Katrina M. Dipple, Satish Agadi, Joseph D. Symonds, Lynne A. Wolfe, Marc C. Patterson, Brigid M. Regan, Luisa Sturiale, Mariusz Olczak, Hiltrud Muhle, Katherine Lewis, William B. Dobyns, and Matthew R. Herzog
- Subjects
UDP-galactose ,congenital disorders of glycosylation ,glycoside ,nucleotide sugar transporter ,Male ,Glycosylation ,Monosaccharide Transport Proteins ,Cells ,Biopsy ,Clinical Sciences ,CHO Cells ,Biology ,medicine.disease_cause ,Article ,Uridine Diphosphate Galactose ,03 medical and health sciences ,chemistry.chemical_compound ,Congenital Disorders of Glycosylation ,Cricetulus ,Clinical Research ,Genetics ,medicine ,2.1 Biological and endogenous factors ,Animals ,Humans ,Aetiology ,Allele ,Gene ,Genetics (clinical) ,Cells, Cultured ,030304 developmental biology ,Pediatric ,Genetics & Heredity ,0303 health sciences ,Mutation ,Cultured ,030305 genetics & heredity ,medicine.disease ,Phenotype ,Biomarker (cell) ,carbohydrates (lipids) ,chemistry ,Female ,Lipid glycosylation ,Congenital disorder of glycosylation - Abstract
Pathogenic de novo variants in the X-linked gene SLC35A2 encoding the major Golgi-localized UDP-galactose transporter required for proper protein and lipid glycosylation cause a rare type of congenital disorder of glycosylation known as SLC35A2-congenital disorders of glycosylation (CDG; formerly CDG-IIm). To date, 29 unique de novo variants from 32 unrelated individuals have been described in the literature. The majority of affected individuals are primarily characterized by varying degrees of neurological impairments with or without skeletal abnormalities. Surprisingly, most affected individuals do not show abnormalities in serum transferrin N-glycosylation, a common biomarker for most types of CDG. Here we present data characterizing 30 individuals and add 26 new variants, the single largest study involving SLC35A2-CDG. The great majority of these individuals had normal transferrin glycosylation. In addition, expanding the molecular and clinical spectrum of this rare disorder, we developed a robust and reliable biochemical assay to assess SLC35A2-dependent UDP-galactose transport activity in primary fibroblasts. Finally, we show that transport activity is directly correlated to the ratio of wild-type to mutant alleles in fibroblasts from affected individuals.
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- 2019
31. Sequencing data of cell-free DNA fragments in living-related liver transplantation for inborn errors of metabolism
- Author
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Yu Shi, Zhi-Jun Zhu, Xiaofan Zhu, Kwong Wai Choy, Fernando Scaglia, Li-Ying Sun, Liming Xuan, Yan Long, Yan Mao, Hoi Ioi Ng, and Bo Liang
- Subjects
Living-related liver transplantation ,medicine.medical_treatment ,Computational biology ,Inborn errors of metabolism ,Liver transplantation ,Biology ,Graft derived cell-free DNA ,lcsh:Computer applications to medicine. Medical informatics ,DNA sequencing ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Living related liver transplantation ,Biochemistry, Genetics and Molecular Biology ,medicine ,lcsh:Science (General) ,030304 developmental biology ,0303 health sciences ,Multidisciplinary ,Massive parallel sequencing ,Metabolism ,Biomarker ,surgical procedures, operative ,Cell-free fetal DNA ,chemistry ,lcsh:R858-859.7 ,Fragment size ,030217 neurology & neurosurgery ,DNA ,lcsh:Q1-390 - Abstract
Graft derived cell-free DNA was recently reported as a non-invasive biomarker to detect graft damage or rejection after liver transplantation. There are a number of methods for quantification of Gcf-DNA,3 including quantitative-PCR, digital droplet PCR and massively parallel sequencing (next generation sequencing). Here we present the NGS4 data and fragment size distribution of cell-free DNA in the plasma of patients with inborn errors of metabolism who underwent living-related liver transplantation. For more insights please see Analysis of fragment size distribution of cell-free DNA: a potential noninvasive marker to monitor graft damage in living-related liver transplantation for inborn errors of metabolism. [1]. Keywords: Graft derived cell-free DNA, Fragment size, Living-related liver transplantation, Inborn errors of metabolism
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- 2019
32. Improved clinical outcome following liver transplant in patients with ethylmalonic encephalopathy
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Gregory M. Rice, Noura S. AlDhaheri, Allison Tam, Fernando Scaglia, Sarah H. Elsea, Mary Elizabeth M. Tessier, Jessica Scott Schwoerer, Anthony M. D'Alessandro, Krupa Mysore, Luis A. Fernandez, and John A. Goss
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Male ,Nucleocytoplasmic Transport Proteins ,hydrogen sulfide toxicity ,Neurodegenerative ,Gastroenterology ,Consanguinity ,Ethylmalonic encephalopathy ,Large intestine ,Genetics (clinical) ,Brain Diseases ,Orthotopic Liver Transplant ,Magnetic Resonance Imaging ,medicine.anatomical_structure ,Phenotype ,Treatment Outcome ,5.1 Pharmaceuticals ,ETHE1 ,Female ,Development of treatments and therapeutic interventions ,medicine.drug ,medicine.medical_specialty ,Mitochondrial disease ,Clinical Sciences ,mitochondrial sulfur dioxygenase ,Article ,Mitochondrial Proteins ,Therapeutic approach ,Clinical Research ,Internal medicine ,Genetics ,medicine ,Humans ,Purpura ,Transplantation ,business.industry ,Brain Diseases, Metabolic, Inborn ,Infant ,Sulfur dioxygenase ,orthotopic liver transplant ,medicine.disease ,Liver Transplantation ,Metronidazole ,Inborn ,Mutation ,Metabolic ,Digestive Diseases ,business ,Biomarkers ,ethylmalonic encephalopathy - Abstract
Ethylmalonic encephalopathy (EE) is a rapidly progressive autosomal recessive mitochondrial disease caused by biallelic pathogenic variants in the ETHE1 gene that encodes the mitochondrial sulfur dioxygenase. It is characterized by neurodevelopmental delay and regression, pyramidal and extrapyramidal signs, recurrent petechiae, chronic diarrhea, and orthostatic acrocyanosis. Laboratory findings include elevated serum levels of lactate and C4-C5 acylcarnitines, and elevated urinary excretion of ethylmalonic acid and C4-C6 acylglycines, notably isobutyrylglycine and 2-methylbutyrylglycine. These findings are attributed to deficiency of the mitochondrial sulfur dioxygenase resulting in toxic accumulation of hydrogen sulfide metabolites in vascular endothelium and mucosal cells of the large intestine. Medical management has thus far been directed toward decreasing the accumulation of hydrogen sulfide metabolites using a combination of metronidazole and N-acetylcysteine. More recently, orthotopic liver transplant (OLT) has been reported as a new therapeutic option for EE. Here, we report two additional cases of EE who achieved psychomotor developmental improvement after 7- and 22-months following OLT. The second case serves as the longest developmental outcome follow-up reported, thus far, following OLT for EE. This report provides additional evidence to validate OLT as a promising therapeutic approach for what was considered to be a fatal disease.
- Published
- 2019
33. Case report and novel treatment of an autosomal recessive Leigh syndrome caused by short-chain enoyl-CoA hydratase deficiency
- Author
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Yaping Yang, Fernando Scaglia, Mir Reza Bekheirnia, Elizabeth Mizerik, Sarah H. Elsea, Rui Xiao, Suzy W. Boyer, Brian J. Shayota, and Claudia Soler-Alfonso
- Subjects
0301 basic medicine ,Male ,medicine.medical_specialty ,Valine metabolism ,Genes, Recessive ,030105 genetics & heredity ,Compound heterozygosity ,Article ,Short chain enoyl-CoA hydratase ,03 medical and health sciences ,Valine ,Internal medicine ,Hydrolase ,Exome Sequencing ,Genetics ,medicine ,Humans ,Genetic Predisposition to Disease ,Restricted diet ,Genetic Testing ,Enoyl-CoA Hydratase ,Genetics (clinical) ,Genetic Association Studies ,business.industry ,Disease Management ,Infant ,medicine.disease ,030104 developmental biology ,Endocrinology ,Inborn error of metabolism ,Reactive metabolite ,Leigh Disease ,business - Abstract
Short chain enoyl-CoA hydratase (SCEH) deficiency leads to a severe form of autosomal recessive Leigh syndrome with inevitable neurological decline and early mortality. SCEH is most notably involved in valine catabolism, a deficiency of which results in various metabolic alterations, including increased levels of the highly reactive metabolite 2-methacrylyl-CoA. With no proven treatments available to date, it has been speculated that patients may respond to a valine restricted diet and/or N-acetylcysteine supplementation, as suggested by early studies of a very similar inborn error of metabolism, 3-hydroxyisobutyryl-CoA hydrolase deficiency. We describe a patient with typical Leigh syndrome clinical findings and identified compound heterozygous variants in ECSH1. Valine-restricted diet was initiated at 6 months of age and N-acetylcysteine supplementation at 9 months with subsequent improvement in growth and slow progress in developmental milestones. However, at 15 months, the patient aspirated during a breakthrough seizure from which he did not recover and died soon after from related complications. This report highlights some of the challenges that remain in the management and treatment of SCEH deficiency, while demonstrating that a valine restricted diet and N-acetylcysteine can be safely administered with the potential for clinical improvement.
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- 2019
34. Complex Compound Inheritance of Lethal Lung Developmental Disorders Due to Disruption of the TBX-FGF Pathway
- Author
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Martin A. Weber, Louise Devisme, Przemyslaw Szafranski, Fernando Scaglia, Megan K. Dishop, Eric Bieth, Claire Beneteau, Bruce Bennetts, Chantal Missirian, David Mowat, Sébastien Küry, Mark H. Lipson, Jennifer N. Dines, Justyna A. Karolak, James R. Lupski, Iben Bache, Amanda S. Freed, Véronique Secq, Bertrand Isidor, Gwenaelle André, Linda Pons, Anne Chun Hui Tsai, Qian Liu, Maria Orsaria, Claudia Gonzaga-Jauregui, Francesco Vetrini, Wendy K. Chung, Nicolas Joram, Jelena Martinovic, Marie Vincent, Cornelius F. Boerkoel, Arie van Haeringen, Tina M. Bartell, Gail H. Deutsch, Olivier Pichon, John A. Phillips, Marie Denis-Musquer, Zeynep Tümer, Tomasz Gambin, Nicolas Chassaing, Thomas Besnard, Edwina J. Popek, Arnaud Molin, Andrew J. Gifford, Zeynep Coban Akdemir, Benjamin Cogné, Kathleen A. Leppig, Galen M. Schauer, Catherine Mercer, Catherine Ward-Melver, Chester W. Brown, Jean Michel Liet, Dominique Carles, Madeleine Joubert, Lara Chalabreysse, Cédric Le Caignec, Damien Sanlaville, Tiphaine Bihouée, Heather C Mefford, Jean P. Pfotenhauer, Pawel Stankiewicz, Massimiliano Don, Anna F. Lee, Jérémie Mortreux, Katrina M. Dipple, Florence Petit, Katie Golden-Grant, Stéphane Bézieau, Shalini N. Jhangiani, Dorothy K. Grange, Laurent Pasquier, Daryl A. Scott, Centre hospitalier universitaire de Nantes (CHU Nantes), unité de recherche de l'institut du thorax UMR1087 UMR6291 (ITX), Université de Nantes - UFR de Médecine et des Techniques Médicales (UFR MEDECINE), Université de Nantes (UN)-Université de Nantes (UN)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Biomolécules et biotechnologies végétales (BBV EA 2106), Université de Tours, Division of Genetic Medicine [Seattle], University of Washington [Seattle], Laboratoire de dynamique des systèmes neuroendocriniens, Institut National de la Santé et de la Recherche Médicale (INSERM), Copenhagen University Hospitals, Clinical genetic clinic, Copenhagen University Hospital, Service de Pathologie, Centre hospitalier universitaire de Nantes (CHU Nantes)-Hôpital Femme-Enfant-Adolescent, Service de foetopathologie, Assistance publique - Hôpitaux de Paris (AP-HP) (APHP)-Université Paris Descartes - Paris 5 (UPD5)-CHU Necker - Enfants Malades [AP-HP], Service de génétique médicale - Unité de génétique clinique [Nantes], Université de Nantes (UN)-Centre hospitalier universitaire de Nantes (CHU Nantes), Service de Génétique [CHU Caen], Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Normandie Université (NU)-CHU Caen, Normandie Université (NU)-Tumorothèque de Caen Basse-Normandie (TCBN)-Tumorothèque de Caen Basse-Normandie (TCBN), Biologie, génétique et thérapies ostéoarticulaires et respiratoires (BIOTARGEN), Normandie Université (NU)-Normandie Université (NU), Service d'anatomie pathologique, CHU Bordeaux [Bordeaux], Université Bordeaux Segalen - Bordeaux 2, Service de Génétique [Purpan], CHU Toulouse [Toulouse]-Hôpital Purpan [Toulouse], CHU Toulouse [Toulouse], Unité différenciation épidermique et auto-immunité rhumatoïde (UDEAR), Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut National de la Santé et de la Recherche Médicale (INSERM), Pôle de Pathologie, Centre de Biologie Pathologie, Centre Hospitalier Régional Universitaire [Lille] (CHRU Lille), Service de génétique clinique [Rennes], Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-CHU Pontchaillou [Rennes]-Hôpital Sud, Unité de recherche interdisciplinaire pour la prévention et le traitement des cancers (ANTICIPE), Normandie Université (NU)-Tumorothèque de Caen Basse-Normandie (TCBN)-Tumorothèque de Caen Basse-Normandie (TCBN)-Centre Régional de Lutte contre le Cancer François Baclesse (CRLC François Baclesse ), Normandie Université (NU)-Tumorothèque de Caen Basse-Normandie (TCBN)-Institut National de la Santé et de la Recherche Médicale (INSERM), service hospitalier d'anatomie et cytologie pathologique humaine, APHM, Marseille, Assistance Publique - Hôpitaux de Marseille (APHM), Laboratoire de génétique chromosomique [Hôpital de la Timone - APHM], Hôpital de la Timone [CHU - APHM] (TIMONE), Marseille medical genetics - Centre de génétique médicale de Marseille (MMG), Aix Marseille Université (AMU)-Institut National de la Santé et de la Recherche Médicale (INSERM), Département de génétique médicale [Hôpital de la Timone - APHM], Aix Marseille Université (AMU)-Assistance Publique - Hôpitaux de Marseille (APHM)- Hôpital de la Timone [CHU - APHM] (TIMONE)-Institut National de la Santé et de la Recherche Médicale (INSERM), Centre de référence des anomalies du développement [Lyon], Hospices Civils de Lyon (HCL), Service de Génétique, Hospices Civils de Lyon (HCL)-Hôpital Louis Pradel [CHU - HCL], Hospices Civils de Lyon (HCL)-Groupe Hospitalier Est, University of Missouri [Columbia], University of Missouri System, Wuhan National Laboratory for Optoelectronics-Huazhong University of Science and Technology, Baylor College of Medicine (BCM), Baylor University, Poznan University of Medical Sciences [Poland] (PUMS), Unité de recherche de l'institut du thorax (ITX-lab), Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Université de Nantes - UFR de Médecine et des Techniques Médicales (UFR MEDECINE), Université de Nantes (UN)-Université de Nantes (UN), Seattle Children’s Hospital, Institute of Mother and Child, Baylor College of Medecine, Kaiser Permanente, Phoenix Children's Hospital, Sydney Children's hospital, The University of Sydney, Prince of Wales Hospital, University of British Columbia (UBC), Akron Children's Hospital, University of Copenhagen = Københavns Universitet (UCPH), AP-HP - Hôpital Antoine Béclère [Clamart], Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP), Université de Toulouse (UT)-Université de Toulouse (UT)-Institut National de la Santé et de la Recherche Médicale (INSERM), Centre Hospitalier Universitaire de Toulouse (CHU Toulouse), CHU Lille, Centre Hospitalier Lyon Sud [CHU - HCL] (CHLS), Université de Rennes (UR)-CHU Pontchaillou [Rennes]-hôpital Sud, Normandie Université (NU)-Tumorothèque de Caen Basse-Normandie (TCBN)-Tumorothèque de Caen Basse-Normandie (TCBN)-Centre Régional de Lutte contre le Cancer François Baclesse [Caen] (UNICANCER/CRLC), Normandie Université (NU)-UNICANCER-Tumorothèque de Caen Basse-Normandie (TCBN)-UNICANCER-Institut National de la Santé et de la Recherche Médicale (INSERM), Sant’Antonio General Hospital, Università degli Studi di Udine - University of Udine [Italie], Université de Lyon, The University of Tennessee Health Science Center [Memphis] (UTHSC), University of Colorado [Colorado Springs] (UCCS), Washington University School of Medicine in St. Louis, Washington University in Saint Louis (WUSTL), Vanderbilt University Medical Center [Nashville], Vanderbilt University [Nashville], Regeneron Pharmaceuticals [Tarrytown], University of Missouri [Columbia] (Mizzou), University Hospital Southampton NHS Foundation Trust, Universiteit Leiden, University of Copenhagen = Københavns Universitet (KU), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-CHU Pontchaillou [Rennes]-hôpital Sud, CHU Caen, Normandie Université (NU)-Tumorothèque de Caen Basse-Normandie (TCBN)-Normandie Université (NU)-Tumorothèque de Caen Basse-Normandie (TCBN)-Université de Caen Normandie (UNICAEN), Normandie Université (NU)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre Régional de Lutte contre le Cancer François Baclesse [Caen] (UNICANCER/CRLC), UNICANCER-Tumorothèque de Caen Basse-Normandie (TCBN)-Normandie Université (NU)-UNICANCER, Institut National de la Santé et de la Recherche Médicale (INSERM)-Aix Marseille Université (AMU), and Leiden University
- Subjects
0301 basic medicine ,Lung Diseases ,Male ,Pathology ,Organogenesis ,030105 genetics & heredity ,Fibroblast growth factor ,T-box transcription factor 4 ,Infant, Newborn, Diseases ,Lung ,Genetics (clinical) ,lacrimoauriculodentodigital (LAAD) syndrome ,respiratory system ,Hypoplasia ,3. Good health ,Pedigree ,medicine.anatomical_structure ,lung hypoplasia ,Paternal Inheritance ,Female ,Maternal Inheritance ,Signal Transduction ,medicine.medical_specialty ,DNA Copy Number Variations ,17q23.1q23.2 recurrent deletion ,neonatal lung disease ,Gestational Age ,Biology ,Polymorphism, Single Nucleotide ,Article ,03 medical and health sciences ,5p12 deletion ,Genetics ,medicine ,Humans ,Lung hypoplasia ,Receptor, Fibroblast Growth Factor, Type 2 ,Enhancer ,[SDV.GEN]Life Sciences [q-bio]/Genetics ,FGF10 ,Infant, Newborn ,medicine.disease ,030104 developmental biology ,Gene Expression Regulation ,Dysplasia ,aplasia of lacrimal and salivary glands ,T-Box Domain Proteins ,Fibroblast Growth Factor 10 - Abstract
International audience; Primary defects in lung branching morphogenesis, resulting in neonatal lethal pulmonary hypoplasias, are incompletely understood. To elucidate the pathogenetics of human lung development, we studied a unique collection of samples obtained from deceased individuals with clinically and histopathologically diagnosed interstitial neonatal lung disorders: acinar dysplasia (n = 14), congenital alveolar dysplasia (n = 2), and other lethal lung hypoplasias (n = 10). We identified rare heterozygous copy-number variant deletions or single-nucleotide variants (SNVs) involving TBX4 (n = 8 and n = 2, respectively) or FGF10 (n = 2 and n = 2, respectively) in 16/26 (61%) individuals. In addition to TBX4, the overlapping similar to 2 Mb recurrent and nonrecurrent deletions at 17q23.1q23.2 identified in seven individuals with lung hypoplasia also remove a lung-specific enhancer region. Individuals with coding variants involving either TBX4 or FGF10 also harbored at least one non-coding SNV in the predicted lung-specific enhancer region, which was absent in 13 control individuals with the overlapping deletions but without any structural lung anomalies. The occurrence of rare coding variants involving TBX4 or FGF10 with the putative hypomorphic non-coding SNVs implies a complex compound inheritance of these pulmonary hypoplasias. Moreover, they support the importance of TBX4-FGF10-FGFR2 epithelial-mesenchymal signaling in human lung organogenesis and help to explain the histopathological continuum observed in these rare lethal developmental disorders of the lung.
- Published
- 2019
35. Side Effects and Behavioral Outcomes Following High-Dose Carnitine Supplementation Among Young Males With Autism Spectrum Disorder: A Pilot Study
- Author
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Dianne Dang, Fernando Scaglia, Charles G. Minard, Christian P. Schaaf, Leandra N. Berry, Alvin Loh, Arthur L. Beaudet, Kerri P. Nowel, Robin P. Goin-Kochel, Anna L. Laakman, and Lauren R. Dowell
- Subjects
0303 health sciences ,Pediatrics ,medicine.medical_specialty ,business.industry ,Brief Report ,lcsh:RJ1-570 ,lcsh:Pediatrics ,medicine.disease ,03 medical and health sciences ,0302 clinical medicine ,Autism spectrum disorder ,Pediatrics, Perinatology and Child Health ,medicine ,Carnitine ,business ,030217 neurology & neurosurgery ,Young male ,030304 developmental biology ,medicine.drug - Published
- 2019
36. DYRK1A-related intellectual disability: a syndrome associated with congenital anomalies of the kidney and urinary tract
- Author
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Jill A. Rosenfeld, Mir Reza Bekheirnia, Ian D. Krantz, Suneeta Madan-Khetarpal, Angela E. Scheuerle, Dolores J. Lamb, David Rodriguez-Buritica, Nasim Bekheirnia, Aisha Al Shamsi, Yaping Yang, Ghayda M. Mirzaa, Yuxiao Xu, Rachel K. Miller, Mauricio R. Delgado, Patricia G. Wheeler, Matthew N. Bainbridge, Natalia Gomez-Ospina, Helen Rankin Willsey, Mark E. Corkins, Alexandria T.M. Blackburn, Lihadh Al-Gazali, Michael C. Braun, Pengfei Liu, Vanessa C. Uma, Mary K. Kukolich, Louanne Hudgins, Hsiao-Tuan Chao, Fernando Scaglia, and Christine M. Eng
- Subjects
0301 basic medicine ,Adult ,Male ,DYRK1A ,Adolescent ,Urinary system ,Xenopus ,ved/biology.organism_classification_rank.species ,Haploinsufficiency ,030105 genetics & heredity ,Protein Serine-Threonine Kinases ,Bioinformatics ,Kidney ,Article ,03 medical and health sciences ,Xenopus laevis ,Young Adult ,Intellectual Disability ,Databases, Genetic ,Exome Sequencing ,medicine ,Animals ,Humans ,Exome ,Model organism ,Child ,Urinary Tract ,Genetics (clinical) ,Exome sequencing ,CAKUT ,Genitourinary system ,ved/biology ,business.industry ,Nephrons ,Protein-Tyrosine Kinases ,Phenotype ,3. Good health ,Disease Models, Animal ,030104 developmental biology ,medicine.anatomical_structure ,Child, Preschool ,Urogenital Abnormalities ,Female ,business - Abstract
Purpose: Haploinsufficiency of DYRK1A causes a recognizable clinical syndrome. The goal of this paper is to investigate congenital anomalies of the kidney and urinary tract (CAKUT) and genital defects (GD) in patients with DYRK1A variants. Methods: A large database of clinical exome sequencing (ES) was queried for de novo DYRK1A variants and CAKUT/GD phenotypes were characterized. Xenopus laevis (frog) was chosen as a model organism to assess Dyrk1a’s role in renal development. Results: Phenotypic details and variants of 19 patients were compiled after an initial observation that one patient with a de novo pathogenic variant in DYRK1A had GD. CAKUT/GD data were available from 15 patients, 11 of whom present with CAKUT/GD. Studies in Xenopus embryos demonstrate that knockdown of Dyrk1a, which is expressed in forming nephrons, disrupts the development of segments of embryonic nephrons, which ultimately give rise to the entire genitourinary (GU) tract. These defects could be rescued by co-injecting wild-type human DYRK1A RNA, but not with DYRK1AR205* or DYRK1AL245R RNA. Conclusion: Evidence supports routine GU screening of all individuals with de novo DYRK1A pathogenic variants to ensure optimized clinical management. Collectively, the reported clinical data and loss of function studies in Xenopus substantiate a novel role for DYRK1A in GU development.
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- 2019
37. DYRK1A-related intellectual disability: a syndrome associated with congenital anomalies of the kidney and urinary tract
- Author
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Mir Reza Bekheirnia, Ian D. Krantz, Suneeta Madan-Khetarpal, David Rodriguez-Buritica, Lihadh Al-Gazali, Louanne Hudgins, Hsiao-Tuan Chao, Rachel K. Miller, Matthew N. Bainbridge, Christine M. Eng, Fernando Scaglia, Patricia G. Wheeler, Mary K. Kukolich, Ghayda M. Mirzaa, Michael C. Braun, Natalia Gomez-Ospina, Alexandria T.M. Blackburn, Nasim Bekheirnia, Yaping Yang, Vanessa C. Uma, Mauricio R. Delgado, Angela E. Scheuerle, Dolores J. Lamb, Jill A. Rosenfeld, Pengfei Liu, and Aisha Al Shamsi
- Subjects
0303 health sciences ,biology ,ved/biology ,business.industry ,Genitourinary system ,Urinary system ,ved/biology.organism_classification_rank.species ,Xenopus ,Bioinformatics ,biology.organism_classification ,Phenotype ,03 medical and health sciences ,0302 clinical medicine ,Medicine ,Haploinsufficiency ,Model organism ,business ,030217 neurology & neurosurgery ,Loss function ,Exome sequencing ,030304 developmental biology - Abstract
PurposeHaploinsufficiency of DYRK1A causes a recognizable clinical syndrome. The goal of this paper is to investigate congenital anomalies of the kidney and urinary tract (CAKUT) and genital defects (GD) in patients with DYRK1A mutations.MethodsA large database of clinical exome sequencing (ES) was queried for de novo DYRK1A mutations and CAKUT/GD phenotypes were characterized. Xenopus laevis (frog) was chosen as a model organism to assess Dyrk1a’s role in renal development.ResultsPhenotypic details and mutations of 19 patients were compiled after an initial observation that one patient with a de novo pathogenic mutation in DYRK1A had GD. CAKUT/GD data were available from 15 patients, 11 of whom present with CAKUT/GD. Studies in Xenopus embryos demonstrate that knockdown of Dyrk1a disrupts the development of segments of developing embryonic nephrons, which ultimately give rise to the entire genitourinary (GU) tract. These defects could be rescued by co-injecting wildtype human DYRK1A RNA, but not with truncated DYRK1AR205* RNA.ConclusionEvidence supports routine GU screening of all individuals with de novo DYRK1A pathogenic variants to ensure optimized clinical management. Collectively, the reported clinical data and loss of function studies in Xenopus substantiate a novel role for DYRK1A in GU development.
- Published
- 2019
- Full Text
- View/download PDF
38. 11979 Using whole-exome and mtDNA sequencing to develop a testing algorithm for diagnosis of mitochondrial disease in Puerto Ricans
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Fernando Scaglia, Carmen Buxo, Elinette Albino, and Alberto Santiago-Cornier
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Genetics ,Mitochondrial DNA ,Mitochondrial disease ,medicine ,General Medicine ,Biology ,medicine.disease ,Exome - Abstract
IMPACT: Alterations in mitochondrial metabolism affect any tissue, especially those with the highest demand for energy. As the symptoms and clinical manifestations are heterogenous, disease diagnosis is challenging. The implementation of genetic-first approach in the diagnosis of mitochondrial diseases will expedite confirmation, treatment, management, and counseling of affected Puerto Rican individuals. OBJECTIVES/GOALS: Mitochondrial diseases are rare, and diagnosis is complex due to the heterogeneity of clinical manifestations. We aim to develop and implement a testing algorithm using a genetics-first approach, facilitating the identification of variants that contribute to mitochondrial disease’s etiology and influence onset and progression in Puerto Ricans. METHODS/STUDY POPULATION: This is a cross-sectional study for characterizing clinical laboratory results from profiles used to evaluate metabolic diseases in individuals with suspected mitochondrial disorders from 2018 to 2021. A subset of 25 individuals from biochemical profile will be recruited to analyze their medical and family history, metabolic biomarkers in blood and urine, hearing test, imaging and chromosomal microarray. The implementation of a genetic testing algorithm using whole exome and mitochondrial DNA sequencing will be performed in a subset of 11 randomized individuals. Descriptive analysis will be reported, including a catalog of all variants. Multivariate analysis will be performed to estimate the statistical association between variants and phenotypes reported and adjusting for potential confounders. RESULTS/ANTICIPATED RESULTS: The biochemical profile of pediatric Puerto Rican individuals suspected of having mitochondrial diseases will be altered and can be used to differentiate among other metabolic causes. We expect to find altered levels of lactate, pyruvate and carnitines in serum, as well as altered organic acids in urine. The implementation of a testing algorithm using both, mitochondrial DNA and whole exome sequencing as first approach will be enabling the identification of disease-causing variants, thus enhancing and confirming the diagnosis of mitochondrial disease in Puerto Ricans. We will be able to identify rare/novel variants specific to our Hispanic population, for both nuclear and mitochondrial DNA. DISCUSSION/SIGNIFICANCE OF FINDINGS: This study will help to characterize the metabolic profile of pediatric Puerto Ricans. No previous study has been reported that describes testing algorithms for genetic diagnosis of mitochondrial disease in our population. Variants found will contribute to a deep understanding of the genetic contribution to phenotypes and disease susceptibility.
- Published
- 2021
39. Solid organ transplantation in primary mitochondrial disease: Proceed with caution
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Sumit Parikh, Helen Mundy, Mark A. Tarnopolsky, Amel Karaa, Richard Haas, Yi Shiau Ng, Courtney J. Wusthoff, Amy Goldstein, Annette Feigenbaum, Dmitriy Niyazov, John Christodoulou, Mark S. Wainwright, Robert McFarland, Mary Kay Koenig, Russell P. Saneto, Bruce K. Cohen, David Dimmock, Grainne S. Gorman, Fernando Scaglia, and Timothy Feyma
- Subjects
Adult ,Graft Rejection ,Male ,0301 basic medicine ,medicine.medical_specialty ,Mitochondrial Diseases ,Adolescent ,Heart Diseases ,Endocrinology, Diabetes and Metabolism ,medicine.medical_treatment ,Mitochondrial disease ,Disease ,Liver transplantation ,Biochemistry ,Kearns–Sayre syndrome ,Young Adult ,03 medical and health sciences ,Endocrinology ,Risk Factors ,Internal medicine ,Genetics ,medicine ,Humans ,Child ,Molecular Biology ,Survival rate ,Kidney transplantation ,Heart transplantation ,business.industry ,Liver Diseases ,Infant ,Middle Aged ,medicine.disease ,Kidney Transplantation ,Liver Transplantation ,Surgery ,Survival Rate ,Transplantation ,Treatment Outcome ,surgical procedures, operative ,030104 developmental biology ,Child, Preschool ,Heart Transplantation ,Female ,Kidney Diseases ,business - Abstract
Solid organ transplants are rarely performed in both adult and pediatric patients with primary mitochondrial disease. Poor outcomes have been described in case reports and small case series. It is unclear whether the underlying genetic disease has a significant impact on post-transplant morbidity and mortality. Data were obtained for 35 patients from 17 Mitochondrial Disease Centers across North America, the United Kingdom and Australia. Patient outcomes were noted after liver, kidney or heart transplantation. Excluding patients with POLG-related disease, post-transplant survival approached or met outcomes seen in non-mitochondrial disease transplant patients. The majority of mitochondrial disease patients did not have worsening of their mitochondrial disease within 90-days post-transplant. Post-transplant complications, including organ rejection, were not a common occurrence and were generally treatable. Many patients did not have a mitochondrial disease considered or diagnosed prior to transplantation. In conclusion, patients with mitochondrial disease in this cohort generally tolerated solid-organ transplantation. Such patients may not need to be excluded from transplant solely for their mitochondrial diagnosis; additional caution may be needed for patients with POLG-related disease. Transplant teams should be aware of mitochondrial disease as an etiology for organ-failure and consider appropriate consultation in patients without a known cause of their symptoms.
- Published
- 2016
40. Corneal clouding, cataract, and colobomas with a novel missense mutation inB4GALT7-a review of eye anomalies in the linkeropathy syndromes
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Mahim Jain, Marta Sabbadini, Teda Arunrut, Keren Machol, Fernando Scaglia, and Anne Slavotinek
- Subjects
0301 basic medicine ,medicine.medical_specialty ,Genotype ,genetic structures ,Mutation, Missense ,Glaucoma ,Genes, Recessive ,Biology ,Cataract ,03 medical and health sciences ,Corneal Opacity ,Cataracts ,Ophthalmology ,Genetics ,medicine ,Humans ,Missense mutation ,Exome ,Eye Abnormalities ,Strabismus ,Alleles ,Genetic Association Studies ,Genetics (clinical) ,Exome sequencing ,Coloboma ,Facies ,High-Throughput Nucleotide Sequencing ,Retinal detachment ,Syndrome ,Galactosyltransferases ,medicine.disease ,eye diseases ,Phenotype ,030104 developmental biology ,Child, Preschool ,Female ,sense organs - Abstract
We present a 5-year-old female with a distinctive phenotype comprising global developmental delays, pre- and post-natal growth restriction, striking joint laxity with soft skin, and scoliosis. She had a triangular facies, a prominent forehead, proptosis, a small nose, and a small jaw. Her ocular findings included corneal clouding, colobomas of the iris and optic nerve, and posterior subcapsular cataracts. Exome sequencing identified homozygosity for c.970T>A, predicting p.(Cys324Ser), in the xylosylprotein 4-beta-galactosyltransferase, polypeptide 7 (B4GALT7) gene. Variant segregation was consistent with autosomal recessive inheritance and the missense substitution was predicted to be pathogenic. As the phenotype of this child is consistent with that described in other "linkeropathy" syndromes, we conclude that p.(Cys324Ser) is likely to be disease-causing. The eye features were a notable part of this child's presentation and mutations in the linkeropathy genes (XYLT1, XYLT2, B4GALT7, B3GALT6, and B3GAT3) can be associated with ocular findings, including blue sclerae, refractive errors, corneal clouding, strabismus, nystagmus, cataracts, glaucoma, and retinal abnormalities, including retinal detachment. The corneal clouding and cataracts in this patient may thus have been caused by her B4GALT7 mutation, but the colobomas are a novel phenotypic finding. However, a different genetic etiology or a role for modifying genetic factors has not been excluded in the etiology of her colobomas. © 2016 Wiley Periodicals, Inc.
- Published
- 2016
41. Molybdenum cofactor deficiency
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Paldeep S. Atwal and Fernando Scaglia
- Subjects
medicine.medical_specialty ,Xanthine Dehydrogenase ,Endocrinology, Diabetes and Metabolism ,Thiosulfates ,Cyclic pyranopterin monophosphate ,Biochemistry ,03 medical and health sciences ,chemistry.chemical_compound ,Organophosphorus Compounds ,0302 clinical medicine ,Endocrinology ,030225 pediatrics ,Internal medicine ,Sulfite oxidase ,Oximes ,Genetics ,medicine ,Humans ,Sulfites ,Cysteine ,Molecular Biology ,Molybdenum cofactor deficiency ,Aldehyde oxidase ,Metal Metabolism, Inborn Errors ,business.industry ,Coarse facial features ,Sulfite Oxidase ,medicine.disease ,Pterins ,3. Good health ,Aldehyde Oxidase ,Xanthine dehydrogenase ,chemistry ,Inborn error of metabolism ,Molybdenum cofactor ,business ,030217 neurology & neurosurgery - Abstract
Molybdenum cofactor deficiency (MoCD) is a severe autosomal recessive inborn error of metabolism first described in 1978. It is characterized by a neonatal presentation of intractable seizures, feeding difficulties, severe developmental delay, microcephaly with brain atrophy and coarse facial features. MoCD results in deficiency of the molybdenum cofactor dependent enzymes sulfite oxidase, xanthine dehydrogenase, aldehyde oxidase and mitochondrial amidoxime reducing component. The resultant accumulation of sulfite, taurine, S-sulfocysteine and thiosulfate contributes to the severe neurological impairment. Recently, initial evidence has demonstrated early treatment with cyclic PMP can turn MoCD type A from a previously neonatal lethal condition with only palliative options, to near normal neurological outcomes in affected patients. We review MoCD and focus on describing the currently published evidence of this exciting new therapeutic option for MoCD type A caused by pathogenic variants in MOCD1.
- Published
- 2016
42. Mitochondrial diseases in North America
- Author
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Robert Schoenaker, Kathryn M. Camp, Valentina Emmanuele, Gregory M. Enns, Xiomara Q Rosales, Sumit Parikh, Richard Buchsbaum, Peter W. Stacpoole, Johan L.K. Van Hove, Austin Larson, Susanne D. DeBrosse, Andrea L. Gropman, Russell P. Saneto, Ralitza H. Gavrilova, Kristin Engelstad, Zarazuela Zolkipli-Cunningham, Richard Haas, Victoria Cooley, Danuta Krotoski, Jaya Ganesh, Salvatore DiMauro, John L.P. Thompson, Mark A. Tarnopolsky, Michio Hirano, Marni J. Falk, Georgirene D. Vladutiu, Emanuele Barca, Johnston Grier, Amy Goldstein, Joshua Kriger, Fernando Scaglia, Yuelin Long, Bruce H. Cohen, Jirair K. Bedoyan, and Amel Karaa
- Subjects
0301 basic medicine ,Mitochondrial encephalomyopathy ,medicine.medical_specialty ,Mitochondrial DNA ,Mitochondrial disease ,High variability ,MEDLINE ,Article ,Retrospective database ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,medicine ,Genetics (clinical) ,business.industry ,medicine.disease ,030104 developmental biology ,Lactic acidosis ,Registry data ,Neurology (clinical) ,business ,030217 neurology & neurosurgery - Abstract
ObjectiveTo describe clinical, biochemical, and genetic features of participants with mitochondrial diseases (MtDs) enrolled in the North American Mitochondrial Disease Consortium (NAMDC) Registry.MethodsThis cross-sectional, multicenter, retrospective database analysis evaluates the phenotypic and molecular characteristics of participants enrolled in the NAMDC Registry from September 2011 to December 2018. The NAMDC is a network of 17 centers with expertise in MtDs and includes both adult and pediatric specialists.ResultsOne thousand four hundred ten of 1,553 participants had sufficient clinical data for analysis. For this study, we included only participants with molecular genetic diagnoses (n = 666). Age at onset ranged from infancy to adulthood. The most common diagnosis was multisystemic disorder (113 participants), and only a minority of participants were diagnosed with a classical mitochondrial syndrome. The most frequent classical syndromes were Leigh syndrome (97 individuals) and mitochondrial encephalomyopathy, lactic acidosis, and stroke-like episodes (71 individuals). Pathogenic variants in the mitochondrial DNA were more frequently observed (414 participants) than pathogenic nuclear gene variants (252 participants). Pathogenic variants in 65 nuclear genes were identified, with POLG1 and PDHA1 being the most commonly affected. Pathogenic variants in 38 genes were reported only in single participants.ConclusionsThe NAMDC Registry data confirm the high variability of clinical, biochemical, and genetic features of participants with MtDs. This study serves as an important resource for future enhancement of MtD research and clinical care by providing the first comprehensive description of participant with MtD in North America.
- Published
- 2020
43. Phenotypic expansion in DDX3X – a common cause of intellectual disability in females
- Author
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Adam W. Hansen, Fernando Scaglia, Paolo Moretti, Scott E. Hickey, Yaping Yang, Jennifer E. Posey, Jing Zhang, Shan Chen, Neil A. Hanchard, LaDonna Immken, Carlos A. Bacino, Weimin He, Lionel Van Maldergem, Zeynep Coban Akdemir, Francesco Vetrini, Alper Gezdirici, Jill A. Rosenfeld, Richard A. Gibbs, Weimin Bi, Anne Slavotinek, Yunru Shao, Donna M. Muzny, Joke Beuten, Jill M. Harris, Rui Xiao, Brett H. Graham, James R. Lupski, Adekunle M. Adesina, John W. Belmont, Xia Wang, Magdalena Walkiewicz, Yunyun Jiang, Davut Pehlivan, Juliette Piard, Brendan Lee, Theresa Mihalic Mosher, Fan Xia, Magalie S. Leduc, Mohammad K. Eldomery, Christine M. Eng, and Tamar Harel
- Subjects
Genetics ,0303 health sciences ,Mitochondrial DNA ,Heart disease ,business.industry ,Skeletal muscle ,Dna variants ,medicine.disease ,Phenotype ,03 medical and health sciences ,0302 clinical medicine ,medicine.anatomical_structure ,Intellectual disability ,medicine ,Neurologic decline ,DDX3X ,business ,030217 neurology & neurosurgery ,030304 developmental biology - Abstract
De novo variants in DDX3X account for 1-3% of unexplained intellectual disability (ID), one of the most common causes of ID, in females. Forty-seven patients (44 females, 3 males) have been described. We identified 29 additional individuals carrying 27 unique DDX3X variants in the setting of complex clinical presentations including developmental delay or ID. In addition to previously reported manifestations, rare or novel phenotypes were identified including respiratory problems, congenital heart disease, skeletal muscle mitochondrial DNA depletion, and late-onset neurologic decline. Our findings expand the spectrum of DNA variants and phenotypes associated with DDX3X disorders.
- Published
- 2018
- Full Text
- View/download PDF
44. MELAS syndrome: Clinical manifestations, pathogenesis, and treatment options
- Author
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Jeremy Y. Jones, Adekunle M. Adesina, Fernando Scaglia, and Ayman W. El-Hattab
- Subjects
Mitochondrial encephalomyopathy ,medicine.medical_specialty ,RNA, Transfer, Leu ,Gastrointestinal Diseases ,Ubiquinone ,Endocrinology, Diabetes and Metabolism ,Mitochondrial disease ,Biology ,Mitochondrion ,Arginine ,Endocrine System Diseases ,Nitric Oxide ,Bioinformatics ,MELAS syndrome ,Biochemistry ,Short stature ,Angiopathy ,Endocrinology ,Muscular Diseases ,Carnitine ,Internal medicine ,MELAS Syndrome ,Genetics ,medicine ,Humans ,Myopathy ,Molecular Biology ,medicine.disease ,Mitochondria ,Energy Transfer ,Cardiovascular Diseases ,Lactic acidosis ,Acidosis, Lactic ,Nervous System Diseases ,medicine.symptom - Abstract
Mitochondrial encephalomyopathy, lactic acidosis, and stroke-like episodes (MELAS) syndrome is one of the most frequent maternally inherited mitochondrial disorders. MELAS syndrome is a multi-organ disease with broad manifestations including stroke-like episodes, dementia, epilepsy, lactic acidemia, myopathy, recurrent headaches, hearing impairment, diabetes, and short stature. The most common mutation associated with MELAS syndrome is the m.3243A>G mutation in the MT-TL1 gene encoding the mitochondrial tRNA(Leu(UUR)). The m.3243A>G mutation results in impaired mitochondrial translation and protein synthesis including the mitochondrial electron transport chain complex subunits leading to impaired mitochondrial energy production. The inability of dysfunctional mitochondria to generate sufficient energy to meet the needs of various organs results in the multi-organ dysfunction observed in MELAS syndrome. Energy deficiency can also stimulate mitochondrial proliferation in the smooth muscle and endothelial cells of small blood vessels leading to angiopathy and impaired blood perfusion in the microvasculature of several organs. These events will contribute to the complications observed in MELAS syndrome particularly the stroke-like episodes. In addition, nitric oxide deficiency occurs in MELAS syndrome and can contribute to its complications. There is no specific consensus approach for treating MELAS syndrome. Management is largely symptomatic and should involve a multidisciplinary team. Unblinded studies showed that l-arginine therapy improves stroke-like episode symptoms and decreases the frequency and severity of these episodes. Additionally, carnitine and coenzyme Q10 are commonly used in MELAS syndrome without proven efficacy.
- Published
- 2015
45. Improvement of regressive autism symptoms in a child withTMLHEdeficiency following carnitine supplementation
- Author
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Christian P. Schaaf, Arthur L. Beaudet, Qin Sun, Yaping Yang, Fernando Scaglia, Sarah H. Elsea, Mathew S. Comeaux, and Mark N. Ziats
- Subjects
Male ,medicine.medical_specialty ,Autism Spectrum Disorder ,TMLHE ,Biology ,Bioinformatics ,Muscular Diseases ,TMLHE gene ,Carnitine ,Internal medicine ,mental disorders ,Genetics ,medicine ,Humans ,Hyperammonemia ,In patient ,Autistic Disorder ,Genetics (clinical) ,Regressive autism ,medicine.disease ,Endocrinology ,Child Development Disorders, Pervasive ,Autism spectrum disorder ,Child, Preschool ,Carnitine biosynthesis ,Dietary Supplements ,Autism ,Cardiomyopathies ,medicine.drug - Abstract
Disorders of carnitine biosynthesis have recently been associated with neurodevelopmental syndromes such as autism spectrum disorder (ASD). A 4-year-old male with autism and two episodes of neurodevelopmental regression was identified to have a mutation in the TMLHE gene, which encodes the first enzyme in the carnitine biosynthesis pathway, and concurrent carnitine deficiency. Following carnitine supplementation, the patient's regression ended, and the boy started gaining developmental milestones. This case report suggests that deficits in carnitine biosynthesis may be responsible for some cases of regression in individuals with ASD, and that testing for the respective biochemical pathway should be considered. Furthermore, this case suggests that carnitine supplementation may be useful in treating (and potentially preventing) regressive episodes in patients with carnitine deficiency. Further work to better define the role of disorders of carnitine biosynthesis in autism spectrum disorder is warranted.
- Published
- 2015
46. Novel de novo mutations inEFTUD2detected by exome sequencing in mandibulofacial dysostosis with Microcephaly syndrome
- Author
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Arindam Sarkar, Fernando Scaglia, Eboni M. Smith, Jill V. Hunter, Elise G. Austin, Lisa Emrick, Seema R. Lalani, and Yaping Yang
- Subjects
Genetics ,Microcephaly ,medicine ,Mandibulofacial dysostosis ,Biology ,medicine.disease ,Genetics (clinical) ,Exome sequencing ,De novo mutations - Published
- 2015
47. De Novo Mutations in SLC25A24 Cause a Craniosynostosis Syndrome with Hypertrichosis, Progeroid Appearance, and Mitochondrial Dysfunction
- Author
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Denise Horn, Penelope E. Bonnen, Anna Floriane Hennig, Marten Jäger, Fernando Scaglia, Bernd Wollnik, Stefan Mundlos, Christian Netzer, Markus Schuelke, Uwe Kornak, Beatrix Fauler, Luitgard Graul-Neumann, Namrata Saha, Holger Thiele, Peter Krawitz, Lara Segebrecht, Jochen Hecht, Nadja Ehmke, Thorsten Mielke, Gökhan Yigit, Rainer Koenig, Carlos A. Bacino, Friederike Hennig, Nicolai Adolphs, Janine Altmüller, Pilar L. Magoulas, Lukasz Smorag, Vera M. Kalscheuer, Peter Nürnberg, Ulrike Krüger, Björn Fischer-Zirnsak, and Esra Kılıç
- Subjects
0301 basic medicine ,Hypertrichosis ,Mitochondrion ,Microphthalmia ,Antiporters ,Cutis Laxa ,Craniofacial Abnormalities ,0302 clinical medicine ,Adenosine Triphosphate ,Progeria ,Exome ,Inner mitochondrial membrane ,Child ,Ductus Arteriosus, Patent ,Genetics (clinical) ,Growth Disorders ,Membrane Potential, Mitochondrial ,Fetal Growth Retardation ,3. Good health ,Mitochondria ,Premature aging ,Child, Preschool ,Female ,Gorlin-chaudhry-moss syndrome ,medicine.medical_specialty ,Mitochondrial DNA ,Adolescent ,Biology ,DNA, Mitochondrial ,Mitochondrial Proteins ,03 medical and health sciences ,Craniosynostoses ,Craniosynostosis ,Internal medicine ,Report ,Genetics ,medicine ,Humans ,Abnormalities, Multiple ,Cutis laxa ,SLC25A24 ,Calcium-Binding Proteins ,Infant ,Hydrogen Peroxide ,Fibroblasts ,medicine.disease ,Oxidative Stress ,030104 developmental biology ,Endocrinology ,Oxidative stress ,Mitochondrial swelling ,Mutation ,Lipoatrophy ,030217 neurology & neurosurgery - Abstract
Gorlin-Chaudhry-Moss syndrome (GCMS) is a dysmorphic syndrome characterized by coronal craniosynostosis and severe midface hypoplasia, body and facial hypertrichosis, microphthalmia, short stature, and short distal phalanges. Variable lipoatrophy and cutis laxa are the basis for a progeroid appearance. Using exome and genome sequencing, we identified the recurrent de novo mutations c.650G>A (p.Arg217His) and c.649C>T (p.Arg217Cys) in SLC25A24 in five unrelated girls diagnosed with GCMS. Two of the girls had pronounced neonatal progeroid features and were initially diagnosed with Wiedemann-Rautenstrauch syndrome. SLC25A24 encodes a mitochondrial inner membrane ATP-Mg/Pi carrier. In fibroblasts from affected individuals, the mutated SLC25A24 showed normal stability. In contrast to control cells, the probands' cells showed mitochondrial swelling, which was exacerbated upon treatment with hydrogen peroxide (H2O2). The same effect was observed after overexpression of the mutant cDNA. Under normal culture conditions, the mitochondrial membrane potential of the probands' fibroblasts was intact, whereas ATP content in the mitochondrial matrix was lower than that in control cells. However, upon H2O2 exposure, the membrane potential was significantly elevated in cells harboring the mutated SLC25A24. No reduction of mitochondrial DNA copy number was observed. These findings demonstrate that mitochondrial dysfunction with increased sensitivity to oxidative stress is due to the SLC25A24 mutations. Our results suggest that the SLC25A24 mutations induce a gain of pathological function and link mitochondrial ATP-Mg/Pi transport to the development of skeletal and connective tissue. N.E. is a participant in the Berlin Institute of Health Charité Clinician Scientist Program, funded by the Charité - Universitätsmedizin Berlin and the Berlin Institute of Health. S.M. was supported by grants from the Deutsche Forschungsgemeinschaft (DFG) and the Max Planck Foundation, B.W. was supported by grants from the DFG SFB1002 project D02, and B.F.-Z. was supported by a grant from the DFG (FI 2240/1-1). U.K. received funding from FP7-EU grant agreement no. 602300 (SYBIL) and the DFG Research Unit FOR 2165 (249509554). Research reported in this publication was supported by National Institute of Neurological Disorders and Stroke of the National Institutes of Health under award number R01NS08372 to P.E.B.
- Published
- 2017
48. Therapies for mitochondrial diseases and current clinical trials
- Author
-
Ana Maria Zarante, Fernando Scaglia, Ayman W. El-Hattab, and Mohammed Almannai
- Subjects
0301 basic medicine ,Mitochondrial Diseases ,Cardiolipins ,Endocrinology, Diabetes and Metabolism ,Mitochondrial disease ,Disease ,Oxidative phosphorylation ,Biology ,Pharmacology ,Arginine ,Nitric Oxide ,Biochemistry ,Article ,Antioxidants ,Catechin ,Oxidative Phosphorylation ,Electron Transport ,03 medical and health sciences ,chemistry.chemical_compound ,Mice ,0302 clinical medicine ,Endocrinology ,Genetics ,medicine ,Cardiolipin ,Idebenone ,Animals ,Humans ,Molecular Biology ,Coenzyme Q10 ,Clinical Trials as Topic ,Genetic Therapy ,Elamipretide ,medicine.disease ,Triterpenes ,Liver Transplantation ,Mitochondria ,030104 developmental biology ,chemistry ,Mitochondrial biogenesis ,030217 neurology & neurosurgery ,medicine.drug - Abstract
Mitochondrial diseases are a clinically and genetically heterogeneous group of disorders that result from dysfunction of the mitochondrial oxidative phosphorylation due to molecular defects in genes encoding mitochondrial proteins. Despite the advances in molecular and biochemical methodologies leading to better understanding of the etiology and mechanism of these diseases, there are still no satisfactory therapies available for mitochondrial disorders. Treatment for mitochondrial diseases remains largely symptomatic and does not significantly alter the course of the disease. Based on limited number of clinical trials, several agents aiming at enhancing mitochondrial function or treating the consequences of mitochondrial dysfunction have been used. Several agents are currently being evaluated for mitochondrial diseases. Therapeutic strategies for mitochondrial diseases include the use of agents enhancing electron transfer chain function (coenzyme Q10, idebenone, ribo-flavin, dichloroacetate, and thiamine), agents acting as energy buffer (creatine), antioxidants (vitamin C, vitamin E, lipoic acid, cysteine donors, and EPI-743), amino acids restoring nitric oxide production (arginine and citrulline), cardiolipin protector (elamipretide), agents enhancing mitochondrial biogenesis (bezafibrate, epicatechin, and RTA 408), nucleotide bypass therapy, liver transplantation, and gene therapy. Although, there is a lack of curative therapies for mitochondrial disorders at the current time, the increased number of clinical research evaluating agents that target different aspects of mitochondrial dysfunction is promising and is expected to generate more therapeutic options for these diseases in the future.
- Published
- 2017
49. Clinical and molecular characterization of de novo loss of function variants in HNRNPU
- Author
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Joke Beuten, Christine M. Eng, Yaping Yang, Fernando Scaglia, Weimin He, Christian P. Schaaf, Magdalena Walkiewicz, Rui Xiao, Hsiao-Tuan Chao, Chunjing Qu, Magalie S. Leduc, Shujuan Pan, Pilar L. Magoulas, and Jonathan A. Bernstein
- Subjects
0301 basic medicine ,Male ,Microcephaly ,Haploinsufficiency ,Heterogeneous-Nuclear Ribonucleoprotein U ,Bioinformatics ,03 medical and health sciences ,Epilepsy ,Intellectual disability ,Genetics ,medicine ,Humans ,Global developmental delay ,Agenesis of the corpus callosum ,Child ,Genetics (clinical) ,Loss function ,Exome sequencing ,business.industry ,Infant ,medicine.disease ,Phenotype ,Pedigree ,030104 developmental biology ,Neurodevelopmental Disorders ,Female ,Chromosome Deletion ,business - Abstract
DNA alterations in the 1q43-q44 region are associated with syndromic neurodevelopmental disorders characterized by global developmental delay, intellectual disability, dysmorphic features, microcephaly, seizures, and agenesis of the corpus callosum. HNRNPU is located within the 1q43-q44 region and mutations in the gene have been reported in patients with early infantile epileptic encephalopathy. Here, we report on the clinical presentation of four patients with de novo heterozygous HNRNPU loss-of-function mutations detected by clinical whole exome sequencing: c.651_660del (p.Gly218Alafs*118), c.1089G>A (p.Trp363*), c.1714C>T (p.Arg572*), and c.2270_2271del (p.Pro757Argfs*7). All patients shared similar clinical features as previously reported including seizures, global developmental delay, intellectual disability, variable neurologic regression, behavior issues, and dysmorphic facial features. Features including heart defects and kidney abnormalities were not reported in our patients. These findings expands the clinical spectrum of HNRNPU-related disorder and shows that HNRNPU contributes to a subset of the clinical phenotypes associated with the contiguous 1q43-q44 deletion syndrome.
- Published
- 2017
50. Response to Newman et al
- Author
-
David Griesemer, Marie Josee Raboisson, Carolyn M. Sue, Richard H. Haas, John M. Shoffner, Amel Karaa, Richard E. Frye, Tyler Reimschisel, Russell P. Saneto, Annette Feigenbaum, Mary Kay Koenig, Bruce H. Cohen, Mark A. Tarnopolsky, Michael C. Kruer, Patrick F. Chinnery, Rita Horvath, Mark S. Korson, David Dimmock, Irina Anselm, Amy Goldstein, John Christodoulou, Lynne A. Wolfe, Zarazuela Zolkipli Cunningham, Michelangelo Mancuso, Shana E. McCormack, Marni J. Falk, Shamima Rahman, Sumit Parikh, Peter W. Stacpoole, Gregory M. Enns, Ramona Salvarinova, Clara D.M. van Karnebeek, Jaya Ganesh, Catherine Brunel-Guitton, Fernando Scaglia, Paediatric Metabolic Diseases, AGEM - Inborn errors of metabolism, and ANS - Cellular & Molecular Mechanisms
- Subjects
0301 basic medicine ,03 medical and health sciences ,Information retrieval ,Text mining ,Mitochondrial Diseases ,Eye Diseases ,business.industry ,MEDLINE ,Medicine ,030105 genetics & heredity ,business ,Genetics (clinical) ,Article - Published
- 2017
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