81 results on '"Katherine Johnson"'
Search Results
2. Identification of GAA variants through whole exome sequencing targeted to a cohort of 606 patients with unexplained limb-girdle muscle weakness
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Katherine Johnson, Ana Töpf, Marta Bertoli, Lauren Phillips, Kristl G. Claeys, Vidosava Rakocevic Stojanovic, Stojan Perić, Andreas Hahn, Paul Maddison, Ela Akay, Alexandra E. Bastian, Anna Łusakowska, Anna Kostera-Pruszczyk, Monkol Lek, Liwen Xu, Daniel G. MacArthur, and Volker Straub
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Whole exome sequencing ,Sequence variants ,Pompe disease ,Medicine - Abstract
Abstract Background Late-onset Pompe disease is a rare genetic neuromuscular disorder caused by a primary deficiency of α-glucosidase and the associated accumulation of glycogen in lysosomal vacuoles. The deficiency of α-glucosidase can often be detected using an inexpensive and readily accessible dried blood spot test when Pompe disease is suspected. Like several neuromuscular disorders, Pompe disease typically presents with progressive weakness of limb-girdle muscles and respiratory insufficiency. Due to the phenotypic heterogeneity of these disorders, however, it is often difficult for clinicians to reach a diagnosis for patients with Pompe disease. Six hundred and six patients from a European population were recruited onto our study. Inclusion criteria stipulated that index cases must present with limb-girdle weakness or elevated serum creatine kinase activity. Whole exome sequencing with at least 250 ng DNA was completed using an Illumina exome capture and a 38 Mb baited target. A panel of 169 candidate genes for limb-girdle weakness was analysed for disease-causing variants. Results A total of 35 variants within GAA were detected. Ten distinct variants in eight unrelated index cases (and four siblings not sequenced in our study) were considered disease-causing, with the patients presenting with heterogeneous phenotypes. The eight unrelated individuals were compound heterozygotes for two variants. Six patients carried the intronic splice site c.-13 T > G transversion and two of the six patients also carried the exonic p.Glu176ArgfsTer45 frameshift. Four of the ten variants were novel in their association with Pompe disease. Conclusions Here, we highlight the advantage of using whole exome sequencing as a tool for detecting, diagnosing and treating patients with rare, clinically variable genetic disorders.
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- 2017
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3. Mid-trimester cervical length not associated with HIV status among pregnant women in Botswana.
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Ingrid Liff, Rebecca Zash, Denis Mingochi, Findo Tsaone Gaonakala, Modiegi Diseko, Gloria Mayondi, Katherine Johnson, Kaitlyn James, Joseph Makhema, Roger Shapiro, and Blair J Wylie
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Medicine ,Science - Abstract
ObjectiveHIV-infected women on antiretroviral therapy have a higher risk of preterm birth than HIV-uninfected women in Botswana. To better understand the mechanism for preterm birth among HIV-infected women, we evaluated whether mid-trimester cervical length differed by HIV status as cervical shortening is associated with an increased risk for preterm birth.MethodsWe conducted a prospective cohort study among pregnant women receiving care at the Scottish Livingstone Hospital in Molepolole, Botswana. Consecutive women referred for routine obstetrical ultrasound were consented and enrolled if between 22w0d and 24w6d by ultrasound biometry. Blinded to maternal HIV status, an obstetrician measured transvaginal cervical length using standardized criteria. Cervical length, as well as the proportion of women with a short cervix (ResultsBetween April 2016 and April 2017, 853 women presenting for obstetric ultrasound were screened, 187 (22%) met eligibility criteria, and 179 (96%) were enrolled. Of those enrolled, 50 (28%) were HIV-infected (86% on antiretroviral therapy), 127 (71%) were HIV-uninfected, and 2 (1%) had unknown HIV status. There was no significant difference in mean cervical length between HIV-infected and HIV-uninfected women (32mm vs 31mm, p = 0.21), or in the proportion with a short cervix (10% vs 14%, p = 0.44). Acceptability data was available for 115 women who underwent a transvaginal ultrasound exam. Of these, 112 of 115 (97%) women deemed the transvaginal scan acceptable.ConclusionsThe increased risk of preterm birth observed among HIV-infected women receiving antiretroviral therapy in Botswana is unlikely associated with mid-trimester cervical shortening. Further research is needed to understand the underlying mechanism for preterm birth among HIV-infected women.
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- 2020
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4. Exome Sequencing of Cell-Free DNA from Metastatic Cancer Patients Identifies Clinically Actionable Mutations Distinct from Primary Disease.
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Timothy M Butler, Katherine Johnson-Camacho, Myron Peto, Nicholas J Wang, Tara A Macey, James E Korkola, Theresa M Koppie, Christopher L Corless, Joe W Gray, and Paul T Spellman
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Medicine ,Science - Abstract
The identification of the molecular drivers of cancer by sequencing is the backbone of precision medicine and the basis of personalized therapy; however, biopsies of primary tumors provide only a snapshot of the evolution of the disease and may miss potential therapeutic targets, especially in the metastatic setting. A liquid biopsy, in the form of cell-free DNA (cfDNA) sequencing, has the potential to capture the inter- and intra-tumoral heterogeneity present in metastatic disease, and, through serial blood draws, track the evolution of the tumor genome. In order to determine the clinical utility of cfDNA sequencing we performed whole-exome sequencing on cfDNA and tumor DNA from two patients with metastatic disease; only minor modifications to our sequencing and analysis pipelines were required for sequencing and mutation calling of cfDNA. The first patient had metastatic sarcoma and 47 of 48 mutations present in the primary tumor were also found in the cell-free DNA. The second patient had metastatic breast cancer and sequencing identified an ESR1 mutation in the cfDNA and metastatic site, but not in the primary tumor. This likely explains tumor progression on Anastrozole. Significant heterogeneity between the primary and metastatic tumors, with cfDNA reflecting the metastases, suggested separation from the primary lesion early in tumor evolution. This is best illustrated by an activating PIK3CA mutation (H1047R) which was clonal in the primary tumor, but completely absent from either the metastasis or cfDNA. Here we show that cfDNA sequencing supplies clinically actionable information with minimal risks compared to metastatic biopsies. This study demonstrates the utility of whole-exome sequencing of cell-free DNA from patients with metastatic disease. cfDNA sequencing identified an ESR1 mutation, potentially explaining a patient's resistance to aromatase inhibition, and gave insight into how metastatic lesions differ from the primary tumor.
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- 2015
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5. Comparison of Multiple Breath Washout and Spirometry in Children with Primary Ciliary Dyskinesia and Cystic Fibrosis and Healthy Controls
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Sharon McNamara, Stephanie D. Davis, Alan Genatossio, Molly Siegel, Erin Sullivan, Robin Johnson, Margaret W. Leigh, William Wheeler, Margaret Rosenfeld, Irma K. Bauer, Katherine Johnson, Jessica E. Pittman, Charles Clem, Anne Griffiths, Bre Anna Kinghorn, and Miriam Davis
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Male ,Pulmonary and Respiratory Medicine ,Spirometry ,medicine.medical_specialty ,Cystic Fibrosis ,Lung Clearance Index ,Severity of Illness Index ,Cystic fibrosis ,Gastroenterology ,03 medical and health sciences ,0302 clinical medicine ,Forced Expiratory Volume ,Internal medicine ,Humans ,Medicine ,030212 general & internal medicine ,Child ,Lung ,MULTIPLE BREATH WASHOUT ,Lung function ,Original Research ,Primary ciliary dyskinesia ,medicine.diagnostic_test ,business.industry ,respiratory system ,medicine.disease ,United States ,respiratory tract diseases ,Cross-Sectional Studies ,Breath Tests ,030228 respiratory system ,Lung disease ,Child, Preschool ,Linear Models ,Female ,business ,Ciliary Motility Disorders - Abstract
Rationale: In cystic fibrosis (CF), the lung clearance index (LCI), derived from multiple breath washout (MBW), is more sensitive in detecting early lung disease than FEV(1); MBW has been less thoroughly evaluated in young patients with primary ciliary dyskinesia (PCD). Objectives: Our objectives were 1) to evaluate the sensitivity of MBW and spirometry for the detection of mild lung disease in young children with PCD and CF compared with healthy control (HC) subjects and 2) to compare patterns of airway obstruction between disease populations. Methods: We used a multicenter, single-visit, observational study in children with PCD and CF with a forced expiratory volume in 1 second (FEV(1)) greater than 60% predicted and HC subjects, ages 3–12 years. Nitrogen MBW and spirometry were performed and overread for acceptability. χ(2) and Kruskall-Wallis tests compared demographics and lung function measures between groups, linear regression evaluated the effect of disease state, and Spearman’s rank correlation coefficient compared the LCI and spirometric measurements. Results: Twenty-five children with PCD, 49 children with CF, and 80 HC children were enrolled, among whom 17 children with PCD (68%), 36 children with CF (73%), and 53 (66%) HC children performed both acceptable spirometry and MBW; these children made up the analytic cohort. The median age was 9.0 years (interquartile range [IQR], 6.8–11.1). The LCI was abnormal (more than 7.8) in 10 of 17 (59%) patients with PCD and 21 of 36 (58%) patients with CF, whereas FEV(1) was abnormal in three of 17 (18%) patients with PCD and six of 36 (17%) patients with CF. The LCI was significantly elevated in patients with PCD and CF compared with HC subjects (ratio of geometric mean vs. HC: PCD 1.27; 95% confidence interval [CI], 1.15–1.39; and CF 1.24; 95% CI, 1.15–1.33]). Children with PCD had lower midexpiratory-phase forced expiratory flow % predicted compared with children with CF (62% [IQR, 50–78%] vs. 85% [IQR, 68–99%]; P = 0.05). LCI did not correlate with FEV(1). Conclusions: The LCI is more sensitive than FEV(1) in detecting lung disease in young patients with PCD, similar to CF. LCI holds promise as a sensitive endpoint for the assessment of early PCD lung disease.
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- 2020
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6. Increased serum miR-193a-5p during non-alcoholic fatty liver disease progression: Diagnostic and mechanistic relevance
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Raluca Pais, Rachel Ostroff, Stephen Harrison, Lars Friis Mikkelsen, Elisabeth Erhardtsen, Sudha Shankar, Kimmo Porthan, Jérôme Boursier, Antonia Sinisi, Michael Kalutkiewicz, Sven Francque, Miljen Martic, Vanessa Pellegrinelli, Phil N. Newsome, Guido Hanauer, Hannele Yki-Järvinen, Rebecca Darlay, Joel Myers, Carla Yunis, Salvatore Petta, Mette Skalshøi Kjær, Pablo Ortiz, Ann K. Daly, James H. Clark, Dina Tiniakos, Yasaman Vali, Hadi Zafarmand, Matej Orešič, Maurizio Parola, Estelle Sandt, Lori L. Jennings, Matt Kelly, Tuulia Hyötyläinen, Detlef Schuppan, Céline Fournier, Chiara Rosso, Diane E. Shevell, Maria Manuela Tonini, Paul Hockings, Aidan McGlinchey, Salma Akhtar, Mette Juul Fisker, Morten A. Karsdal, Diane Whalley, Melissa R. Miller, Aldo Trylesinski, Mattias Ekstedt, Stefan Neubauer, Jeremy M. Palmer, Partho Sen, Michael Pavlides, Per Qvist, Isabel Fernández, Luca Miele, Fabio Marra, Stergios Kechagias, Richard Torstenson, Katherine Johnson, Jean-François Dufour, Elisabetta Bugianesi, M. Julia Brosnan, George V. Papatheodoridis, Kay M. Pepin, Daniel Guldager Kring Rasmussen, Henrik Landgren, Rachel Queen, Simon Cockell, Michael Allison, Patrick M.M. Bossuyt, Rocío Gallego-Durán, Christian Rosenquist, Leigh Alexander, Elizabeth Shumbayawonda, Michele Vacca, Antonio Vidal-Puig, David Wenn, Rémy Hanf, Oscar Millet, Michalina Zatorska, R. Myers, José M. Mato, Jenny Lee, Theresa Tuthill, James Twiss, Ramy Younes, Peter Leary, Lynda Doward, Kristy Wonders, Guruprasad P. Aithal, Sarah Charlton, Vlad Ratziu, Cecília M. P. Rodrigues, Christian Trautwein, Helena Cortez-Pinto, Gideon Ho, Matt J. Barter, Judith Ertle, Jörn M. Schattenberg, Maria-Magdalena Balp, Yang-Lin Liu, Clifford A. Brass, Olivier Govaere, Amalia Gastaldelli, Sergio Rodriguez Cuenca, Pierre Chaumat, Fiona Oakley, Luca Valenti, Simon J. Cockell, Saskia W.C. van Mil, Ferenc E. Mózes, Andreas Geier, Timothy Hardy, Pierre Bedossa, Andrea Dennis, Richard L. Ehman, Charlotte Erpicum, Karine Clément, Jeremy F. L. Cobbold, Christopher P. Day, Rajarshi Banerjee, Manuel Romero-Gómez, Quentin M. Anstee, Adriaan G. Holleboom, Heather J. Cordell, Kevin L. Duffin, Diana Julie Leeming, Epidemiology and Data Science, APH - Methodology, APH - Personalized Medicine, Vascular Medicine, ACS - Diabetes & metabolism, AGEM - Amsterdam Gastroenterology Endocrinology Metabolism, APH - Aging & Later Life, ARD - Amsterdam Reproduction and Development, Graduate School, Investigators, LITMUS Consortium, Johnson K., Leary P.J., Govaere O., Barter M.J., Charlton S.H., Cockell S.J., Tiniakos D., Zatorska M., Bedossa P., Brosnan M.J., Cobbold J.F., Ekstedt M., Aithal G.P., Clement K., Schattenberg J.M., Boursier J., Ratziu V., Bugianesi E., Anstee Q.M., Daly A.K., Clark J., Cordell H.J., Darlay R., Day C.P., Hardy T., Liu Y.-L., Oakley F., Palmer J., Queen R., Wonders K., Bossuyt P.M., Holleboom A.G., Zafarmand H., Vali Y., Lee J., Pais R., Schuppan D., Allison M., Cuenca S.R., Pellegrinelli V., Vacca M., Vidal-Puig A., Hyotylainen T., McGlinchey A., Oresic M., Sen P., Mato J., Millet O., Dufour J.-F., Harrison S., Neubauer S., Pavlides M., Mozes F., Akhtar S., Banerjee R., Kelly M., Shumbayawonda E., Dennis A., Erpicum C., Romero-Gomez M., Gallego-Duran R., Fernandez I., Karsdal M., Leeming D., Fisker M.J., Erhardtsen E., Rasmussen D., Qvist P., Sinisi A., Sandt E., Tonini M.M., Parola M., Rosso C., Marra F., Gastaldelli A., Francque S., Kechagias S., Yki-Jarvinen H., Porthan K., van Mil S., Papatheodoridis G., Cortez-Pinto H., Valenti L., Petta S., Miele L., Geier A., Trautwein C., Hockings P., Newsome P., Wenn D., Pereira Rodrigues C.M., Hanf R., Chaumat P., Rosenquist C., Trylesinski A., Ortiz P., Duffin K., Yunis C., Miller M., Tuthill T., Ertle J., Younes R., Alexander L., Ostroff R., Kjaer M.S., Mikkelsen L.F., Brass C., Jennings L., Balp M.-M., Martic M., Hanauer G., Shankar S., Torstenson R., Fournier C., Ehman R., Kalutkiewicz M., Pepin K., Myers J., Shevell D., Ho G., Landgren H., Myers R., Doward L., Whalley D., Twiss J., Miller, Melissa, Tuthill, Theresa, Ertle, Judith, Younes, Ramy, Alexander, Leigh, Ostroff, Rachel, Kjær, Mette Skalshøi, Mikkelsen, Lars Friis, Brass, Clifford, Jennings, Lori, Balp, Maria-Magdalena, Martic, Miljen, Hanauer, Guido, Shankar, Sudha, Torstenson, Richard, Fournier, Céline, Ehman, Richard, Kalutkiewicz, Michael, Pepin, Kay, Myers, Joel, Shevell, Diane, Ho, Gideon, Landgren, Henrik, Myers, Rob, Doward, Lynda, Whalley, Diane, Twiss, James, Clark, James, Cordell, Heather J., Darlay, Rebecca, Day, Christopher P., Hardy, Tim, Liu, Yang-Lin, Oakley, Fiona, Palmer, Jeremy, Queen, Rachel, Wonders, Kristy, Bossuyt, Patrick M., Holleboom, Adriaan G., Zafarmand, Hadi, Vali, Yasaman, Lee, Jenny, Clement, Karine, Pais, Raluca, Schuppan, Detlef, Allison, Michael, Cuenca, Sergio Rodriguez, Pellegrinelli, Vanessa, Vacca, Michele, Vidal-Puig, Antonio, Hyötyläinen, Tuulia, McGlinchey, Aidan, Orešič, Matej, Sen, Partho, Mato, Jose, Millet, Óscar, Dufour, Jean-Francois, Harrison, Stephen, Neubauer, Stefan, Pavlides, Michael, Mozes, Ferenc, Akhtar, Salma, Banerjee, Rajarshi, Kelly, Matt, Shumbayawonda, Elizabeth, Dennis, Andrea, Erpicum, Charlotte, Romero-Gomez, Manuel, Gallego-Durán, Rocío, Fernández, Isabel, Karsdal, Morten, Leeming, Diana, Fisker, Mette Juul, Erhardtsen, Elisabeth, Rasmussen, Daniel, Qvist, Per, Sinisi, Antonia, Sandt, Estelle, Tonini, Maria Manuela, Parola, Maurizio, Rosso, Chiara, Marra, Fabio, Gastaldelli, Amalia, Francque, Sven, Kechagias, Stergios, Yki-Järvinen, Hannele, Porthan, Kimmo, van Mil, Saskia, Papatheodoridis, George, Cortez-Pinto, Helena, Valenti, Luca, Petta, Salvatore, Miele, Luca, Geier, Andreas, Trautwein, Christian, Hockings, Paul, Newsome, Phil, Wenn, David, Pereira Rodrigues, Cecília Maria, Hanf, Rémy, Chaumat, Pierre, Rosenquist, Christian, Trylesinski, Aldo, Ortiz, Pablo, Duffin, Kevin, and Yunis, Carla
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SCORING SYSTEM ,CPM, counts per million ,AUROC, area under the receiver operating characteristic ,RC799-869 ,AST, aspartate aminotransferase ,MicroRNA ,Non-alcoholic fatty liver disease ,Biomarker ,Sequencing ,TGF-β, transforming growth factor-beta ,Gastroenterology ,STEATOHEPATITIS ,Liver disease ,0302 clinical medicine ,Fibrosis ,miRNA, microRNA ,logFC, log2 fold change ,FIBROSIS ,Immunology and Allergy ,0303 health sciences ,education.field_of_study ,NAS, NAFLD activity score ,medicine.diagnostic_test ,Fatty liver ,GTEx, Genotype-Tissue Expression ,Diseases of the digestive system. Gastroenterology ,3. Good health ,Real-time polymerase chain reaction ,Biomarker, MicroRNA, Non-alcoholic fatty liver disease, Sequencing ,Liver biopsy ,ACID ,Biomarker (medicine) ,030211 gastroenterology & hepatology ,Life Sciences & Biomedicine ,Research Article ,EXPRESSION ,medicine.medical_specialty ,NAFLD, non-alcoholic fatty liver disease ,NASH, non-alcoholic steatohepatitis ,Population ,Gastroenterology and Hepatology ,SAF, steatosis–activity–fibrosis ,VALIDATION ,ER, endoplasmic reticulum ,03 medical and health sciences ,cDNA, complementary DNA ,Internal medicine ,ALT, alanine aminotransferase ,Gastroenterologi ,Internal Medicine ,medicine ,NAFL, non-alcoholic fatty liver ,ALGORITHM ,FIB-4, fibrosis-4 ,education ,030304 developmental biology ,PCA, principal component analysis ,Science & Technology ,Gastroenterology & Hepatology ,Hepatology ,business.industry ,FC, fold change ,medicine.disease ,digestive system diseases ,FLIP, fatty liver inhibition of progression ,Ct, cycle threshold ,Steatosis ,qPCR, quantitative PCR ,business - Abstract
Background & Aims Serum microRNA (miRNA) levels are known to change in non-alcoholic fatty liver disease (NAFLD) and may serve as useful biomarkers. This study aimed to profile miRNAs comprehensively at all NAFLD stages. Methods We profiled 2,083 serum miRNAs in a discovery cohort (183 cases with NAFLD representing the complete NAFLD spectrum and 10 population controls). miRNA libraries generated by HTG EdgeSeq were sequenced by Illumina NextSeq. Selected serum miRNAs were profiled in 372 additional cases with NAFLD and 15 population controls by quantitative reverse transcriptase PCR. Results Levels of 275 miRNAs differed between cases and population controls. Fewer differences were seen within individual NAFLD stages, but miR-193a-5p consistently showed increased levels in all comparisons. Relative to NAFL/non-alcoholic steatohepatitis (NASH) with mild fibrosis (stage 0/1), 3 miRNAs (miR-193a-5p, miR-378d, and miR378d) were increased in cases with NASH and clinically significant fibrosis (stages 2–4), 7 (miR193a-5p, miR-378d, miR-378e, miR-320b, miR-320c, miR-320d, and miR-320e) increased in cases with NAFLD activity score (NAS) 5–8 compared with lower NAS, and 3 (miR-193a-5p, miR-378d, and miR-378e) increased but 1 (miR-19b-3p) decreased in steatosis, activity, and fibrosis (SAF) activity score 2–4 compared with lower SAF activity. The significant findings for miR-193a-5p were replicated in the additional cohort with NAFLD. Studies in Hep G2 cells showed that following palmitic acid treatment, miR-193a-5p expression decreased significantly. Gene targets for miR-193a-5p were investigated in liver RNAseq data for a case subgroup (n = 80); liver GPX8 levels correlated positively with serum miR-193a-5p. Conclusions Serum miR-193a-5p levels correlate strongly with NAFLD activity grade and fibrosis stage. MiR-193a-5p may have a role in the hepatic response to oxidative stress and is a potential clinically tractable circulating biomarker for progressive NAFLD. Lay summary MicroRNAs (miRNAs) are small pieces of nucleic acid that may turn expression of genes on or off. These molecules can be detected in the blood circulation, and their levels in blood may change in liver disease including non-alcoholic fatty liver disease (NAFLD). To see if we could detect specific miRNA associated with advanced stages of NAFLD, we carried out miRNA sequencing in a group of 183 patients with NAFLD of varying severity together with 10 population controls. We found that a number of miRNAs showed changes, mainly increases, in serum levels but that 1 particular miRNA miR-193a-5p consistently increased. We confirmed this increase in a second group of cases with NAFLD. Measuring this miRNA in a blood sample may be a useful way to determine whether a patient has advanced NAFLD without an invasive liver biopsy., Graphical abstract, Highlights • Serum miRNA was sequenced in 183 NAFLD cases of varying severity and 10 population controls. • Plasma levels of miR-193a-5p were significantly increased in patients with advanced fibrosis, high NAS scores, or high SAF scores. • Other miRNAs including miR378d and miR378e were also significantly increased in certain comparisons. • The findings for miR-193a-5p were replicated in a cohort of 372 additional NAFLD cases.
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- 2022
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7. Modulation of the inflammatory response benefits treatment-resistant bipolar depression: A randomized clinical trial
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Angelos Halaris, Adriana Cantos, James Sinacore, Katherine Johnson, and Michael Hakimi
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Adult ,Male ,medicine.medical_specialty ,Bipolar Disorder ,Nausea ,Citalopram ,Placebo ,law.invention ,Depressive Disorder, Treatment-Resistant ,03 medical and health sciences ,0302 clinical medicine ,Double-Blind Method ,Randomized controlled trial ,law ,Internal medicine ,Humans ,Medicine ,Escitalopram ,Bipolar disorder ,Adverse effect ,Psychiatric Status Rating Scales ,Cyclooxygenase 2 Inhibitors ,business.industry ,Anti-Inflammatory Agents, Non-Steroidal ,Middle Aged ,medicine.disease ,Antidepressive Agents ,030227 psychiatry ,Discontinuation ,Psychiatry and Mental health ,Clinical Psychology ,Treatment Outcome ,Celecoxib ,Adjunctive treatment ,Female ,medicine.symptom ,business ,030217 neurology & neurosurgery ,medicine.drug - Abstract
Objective The goal of this study was to reduce treatment resistance and enhance antidepressant response in patients with treatment-resistant bipolar depression (TRBDD) by modulating inflammatory activation. Methods Forty-seven TRBDD patients completed a randomized, double-blind, placebo (PBO)-controlled two-arm study using celecoxib (CBX), a cyclooxygenase 2 (COX-2) inhibitor, in combination with escitalopram (ESC). The Hamilton Depression (17-Item) and the Hamilton Anxiety Rating Scales were used to quantify symptom severity. Self-rating instruments included BDI, BAI and QLES-Q questioner. An adverse events inventory was used, and the possibility of bleeding diathesis was monitored. Complete blood count (CBC), prothrombin time (PT), and activated partial thromboplastin time (APTT) were determined. Comparison of mood scores between the CBX and PBO groups were conducted using a mixed ANOVA and an Independent Sample Student t-test. Results The CBX adjunctive treatment produced significantly more responders and remitters than the PBO arm. Compared to the PBO group (n = 20), the CBX group (n = 27) experienced lower depression severity through the entire course of the study, showing significant decrease in depression and anxiety scores as early as week 1. Except for initial mild nausea, no adverse events were reported and study medications were well tolerated. Conclusions Modulation of the inflammatory response through targeted inhibition of the enzyme COX-2 by means of CBX reduces TRBDD and augments and accelerates treatment response in an efficacious and safe manner. Future studies should replicate these findings and additionally investigate whether prolonged administration of CBX is required to maintain remission by adding a discontinuation phase to the study design. Trial Registration Clinicaltrials.gov ID: NCT01479829.
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- 2020
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8. POPDC3Gene Variants Associate with a New Form of Limb Girdle Muscular Dystrophy
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Ana Töpf, Max Freund, Thomas Brand, Roland F.R. Schindler, Thomas Müller, Padmini Sarathchandra, Shahriar Nafissi, Nicoline Løkken, Susanne Rinné, John Vissing, Jordi Díaz-Manera, Katherine Johnson, Vanessa M. French, Niels Decher, Thomas Krag, Morten Duno, and Volker Straub
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Male ,0301 basic medicine ,Morpholino ,Muscle Proteins ,Protein Structure, Secondary ,DISEASE ,Cohort Studies ,Xenopus laevis ,0302 clinical medicine ,Missense mutation ,PROTEIN FAMILY ,Muscular dystrophy ,Zebrafish ,biology ,medicine.diagnostic_test ,Middle Aged ,Pedigree ,medicine.anatomical_structure ,Neurology ,Gene Knockdown Techniques ,SKELETAL-MUSCLE ,Female ,medicine.symptom ,Life Sciences & Biomedicine ,Adult ,medicine.medical_specialty ,Clinical Neurology ,CLASSIFICATION ,03 medical and health sciences ,Internal medicine ,medicine ,Animals ,Humans ,Muscle, Skeletal ,Science & Technology ,Neurology & Neurosurgery ,Muscle biopsy ,ZEBRAFISH ,Neurosciences ,Genetic Variation ,Muscle weakness ,Skeletal muscle ,1103 Clinical Sciences ,biology.organism_classification ,medicine.disease ,MODEL ,030104 developmental biology ,Endocrinology ,Muscular Dystrophies, Limb-Girdle ,Neurosciences & Neurology ,BVES ,Neurology (clinical) ,1109 Neurosciences ,Cell Adhesion Molecules ,030217 neurology & neurosurgery ,Limb-girdle muscular dystrophy - Abstract
OBJECTIVE: The Popeye domain containing 3 (POPDC3) gene encodes a membrane protein involved in cyclic adenosine monophosphate (cAMP) signaling. Besides gastric cancer, no disease association has been described. We describe a new muscular dystrophy associated with this gene.METHODS: We screened 1,500 patients with unclassified limb girdle weakness or hyperCKemia for pathogenic POPDC3 variants. Five patients carrying POPDC3 variants were examined by muscle magnetic resonance imaging (MRI), muscle biopsy, and cardiac examination. We performed functional analyses in a zebrafish popdc3 knockdown model and heterologous expression of the mutant proteins in Xenopus laevis oocytes to measure TREK-1 current.RESULTS: We identified homozygous POPDC3 missense variants (p.Leu155His, p.Leu217Phe, and p.Arg261Gln) in 5 patients from 3 ethnically distinct families. Variants affected highly conserved residues in the Popeye (p.Leu155 and p.Leu217) and carboxy-terminal (p.Arg261) domains. The variants were almost absent from control populations. Probands' muscle biopsies were dystrophic, and serum creatine kinase levels were 1,050 to 9,200U/l. Muscle weakness was proximal with adulthood onset in most patients and affected lower earlier than upper limbs. Muscle MRI revealed fat replacement of paraspinal and proximal leg muscles; cardiac investigations were unremarkable. Knockdown of popdc3 in zebrafish, using 2 different splice-site blocking morpholinos, resulted in larvae with tail curling and dystrophic muscle features. All 3 mutants cloned in Xenopus oocytes caused an aberrant modulation of the mechano-gated potassium channel, TREK-1.INTERPRETATION: Our findings point to an important role of POPDC3 for skeletal muscle function and suggest that pathogenic variants in POPDC3 are responsible for a novel type of autosomal recessive limb girdle muscular dystrophy. ANN NEUROL 2019;86:832-843.
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- 2019
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9. Affect and the reparative turn: Repairing qualitative analysis?
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Eduard Moreno-Gabriel and Katherine Johnson
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Affect theory ,Discourse analysis ,medicine.medical_treatment ,05 social sciences ,050401 social sciences methods ,050109 social psychology ,Social constructionism ,Affect (psychology) ,Mental health ,Epistemology ,Qualitative analysis ,0504 sociology ,Psychoeducation ,medicine ,0501 psychology and cognitive sciences ,Psychology ,General Psychology - Abstract
Contrary to social constructionism, affect theories are less concerned with privileging the epistemological problems of knowledge construction than with attending to the ontological. This r...
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- 2019
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10. Explaining effective mental health support for LGBTQ+ youth: A meta-narrative review
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Steven Pryjmachuk, Elizabeth Hughes, Katherine Johnson, Elizabeth McDermott, Rachael Eastham, Emily Pattinson, Olu Jenzen, Stephanie D. Davis, and Céu Mateus
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Sexual minority ,medicine.medical_specialty ,Gender minority ,Youth ,Social work ,Youth work ,Public health ,Applied psychology ,Mental health ,Youth studies ,Article ,Adolescence ,Intervention (counseling) ,medicine ,Normative ,Public aspects of medicine ,RA1-1270 ,Psychology ,RZ400-408 ,Mental healing ,LGBTQ+ - Abstract
This meta-narrative review on mental health early intervention support for LGBTQ+ youth aimed to develop a theoretical framework to explain effective mental health support. Using the RAMESES standards for meta-narrative reviews, we identified studies from database searches and citation-tracking. Data extraction and synthesis was conducted through conceptual coding in Atlas.ti. in two stages: 1) conceptual mapping of the meta-narratives; 2) comparing the key concepts across the meta-narratives to produce a theoretical framework. In total, 2951 titles and abstracts were screened and 200 full papers reviewed. 88 studies were included in the final review. Stage 1 synthesis identified three meta-narratives - psychological, psycho-social, and social/youth work. Stage 2 synthesis resulted in a non-pathological theoretical framework for mental health support that acknowledged the intersectional aspects of LGBTQ+ youth lives, and placed youth at the centre of their own mental health care. The study of LGBTQ+ youth mental health has largely occurred independently across a range of disciplines such as psychology, sociology, public health, social work and youth studies. The interdisciplinary theoretical framework produced indicates that effective early intervention mental health support for LGBTQ+ youth must prioritise addressing normative environments that marginalises youth, LGBTQ+ identities and mental health problems., Highlights • Despite elevated rates of poor mental health, LGBTQ + youth underutilize mental health services and often experience inadequate support. • There is a limited evidence-base examining LGBTQ + youth early intervention mental health support needs. • Early intervention services for LGBTQ + youth mental health must de-pathologize emotional distress, difficult thoughts and behaviours. • Early intervention support must address normative environments that marginalises youth, intersectional LGBTQ + identities and mental health. • Mental health support providers must understand individual lives, connect with LGBTQ+ youth, facilitate their autonomy and encourage agency.
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- 2021
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11. Transcriptomic profiling across the nonalcoholic fatty liver disease spectrum reveals gene signatures for steatohepatitis and fibrosis
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Matej Orešič, Fabio Marra, Christopher P. Day, Federico Ravaioli, Katherine Johnson, Elisabetta Bugianesi, Jérôme Boursier, Pierre Bedossa, Olivier Govaere, Rebecca Darlay, Salvatore Petta, Jeremy M. Palmer, Quentin M. Anstee, Ramy Younes, Heather J. Cordell, Rachel Queen, Jörn M. Schattenberg, Ann K. Daly, Mattias Ekstedt, Dina Tiniakos, Leigh Alexander, Michele Vacca, Antonio Vidal-Puig, Chiara Rosso, Karine Clément, Michael Allison, Vlad Ratziu, Kristy Wonders, Simon Cockell, Bioinformatics Support Unit, Newcastle University [Newcastle], Alma Mater Studiorum Università di Bologna [Bologna] (UNIBO), Govaere O., Cockell S., Tiniakos D., Queen R., Younes R., Vacca M., Alexander L., Ravaioli F., Palmer J., Petta S., Boursier J., Rosso C., Johnson K., Wonders K., Day C.P., Ekstedt M., Oresic M., Darlay R., Cordell H.J., Marra F., Vidal-Puig A., Bedossa P., Schattenberg J.M., Clement K., Allison M., Bugianesi E., Ratziu V., Daly A.K., and Anstee Q.M.
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0301 basic medicine ,Liver Cirrhosis ,Cirrhosis ,[SDV]Life Sciences [q-bio] ,Disease ,Biology ,Transcriptome ,03 medical and health sciences ,0302 clinical medicine ,Fibrosis ,nash ,Non-alcoholic Fatty Liver Disease ,Diabetes mellitus ,Nonalcoholic fatty liver disease ,medicine ,Diabetes Mellitus ,Humans ,General Medicine ,medicine.disease ,3. Good health ,030104 developmental biology ,Diabetes Mellitus, Type 2 ,Liver ,Immunology ,030211 gastroenterology & hepatology ,GDF15 ,Steatohepatitis ,Type 2 - Abstract
International audience; The mechanisms that drive nonalcoholic fatty liver disease (NAFLD) remain incompletely understood. This large multicenter study characterized the transcriptional changes that occur in liver tissue across the NAFLD spectrum as disease progresses to cirrhosis to identify potential circulating markers. We performed high-throughput RNA sequencing on a discovery cohort comprising histologically characterized NAFLD samples from 206 patients. Unsupervised clustering stratified NAFLD on the basis of disease activity and fibrosis stage with differences in age, aspartate aminotransferase (AST), type 2 diabetes mellitus, and carriage of PNPLA3 rs738409 , a genetic variant associated with NAFLD. Relative to early disease, we consistently identified 25 differentially expressed genes as fibrosing steatohepatitis progressed through stages F2 to F4. This 25-gene signature was independently validated by logistic modeling in a separate replication cohort ( n = 175), and an integrative analysis with publicly available single-cell RNA sequencing data elucidated the likely relative contribution of specific intrahepatic cell populations. Translating these findings to the protein level, SomaScan analysis in more than 300 NAFLD serum samples confirmed that circulating concentrations of proteins AKR1B10 and GDF15 were strongly associated with disease activity and fibrosis stage. Supporting the biological plausibility of these data, in vitro functional studies determined that endoplasmic reticulum stress up-regulated expression of AKR1B10 , GDF15 , and PDGFA , whereas GDF15 supplementation tempered the inflammatory response in macrophages upon lipid loading and lipopolysaccharide stimulation. This study provides insights into the pathophysiology of progressive fibrosing steatohepatitis, and proof of principle that transcriptomic changes represent potentially tractable and clinically relevant markers of disease progression.
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- 2020
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12. Visualising mental health with an LGBT community group
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Katherine Johnson
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medicine.medical_specialty ,Community group ,medicine ,Psychology ,Psychiatry ,Mental health - Published
- 2020
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13. The clinical-phenotype continuum in dync1h1-related disorders-genomic profiling and proposal for a novel classification
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Jens Schallner, Florence Petit, Ingrid P.C. Krapels, Bernhard Weschke, Lena-Luise Becker, Levinus A. Bok, Thomas Smol, Dalia Abdin, Angela M. Kaindl, Katherine Johnson, Lance H. Rodan, Stephanie Spranger, Maja von der Hagen, Michael Seifert, Hormos Salimi Dafsari, Sebahattin Cirak, Volker Straub, Nataliya Di Donato, Charité - UniversitätsMedizin = Charité - University Hospital [Berlin], University Hospital of Cologne [Cologne], Technische Universität Dresden = Dresden University of Technology (TU Dresden), Maladies RAres du DEveloppement embryonnaire et du MEtabolisme : du Phénotype au Génotype et à la Fonction - ULR 7364 (RADEME), Université de Lille-Centre Hospitalier Régional Universitaire [Lille] (CHRU Lille), ASML [VELDHOVEN] (ASML), ASML Netherlands B.V., Department of Neurology, Children's Hospital [Boston], Boston Children's Hospital, Maastricht University [Maastricht], University of Bremen, Newcastle University [Newcastle], Center for Molecular Medicine [Cologne] (CMMC), University of Cologne, MUMC+: DA KG Polikliniek (9), and RS: Carim - H02 Cardiomyopathy
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Cytoplasmic Dyneins ,Male ,0301 basic medicine ,INTELLECTUAL DISABILITY ,[SDV]Life Sciences [q-bio] ,DNA Mutational Analysis ,Mutation, Missense ,Disease ,VARIANTS ,Bioinformatics ,Article ,Muscular Atrophy, Spinal ,03 medical and health sciences ,0302 clinical medicine ,Genotype ,Genetic variation ,Intellectual disability ,Genetics ,medicine ,Humans ,Missense mutation ,MALFORMATIONS ,LOWER-EXTREMITY ,Genetics (clinical) ,Dominance (genetics) ,SPECTRUM ,Epilepsy ,Disease genetics ,business.industry ,MUTATIONS ,DYNC1H1 ,SPINAL MUSCULAR-ATROPHY ,Brain ,Infant ,CORTICAL DEVELOPMENT ,GENETIC-VARIATION ,Genomics ,Spinal muscular atrophy ,medicine.disease ,Phenotype ,3. Good health ,030104 developmental biology ,Lower Extremity ,Female ,business ,030217 neurology & neurosurgery ,Lower Extremity Deformities, Congenital - Abstract
Mutations in the cytoplasmic dynein 1 heavy chain gene (DYNC1H1) have been identified in rare neuromuscular (NMD) and neurodevelopmental (NDD) disorders such as spinal muscular atrophy with lower extremity dominance (SMALED) and autosomal dominant mental retardation syndrome 13 (MRD13). Phenotypes and genotypes of ten pediatric patients with pathogenic DYNC1H1 variants were analyzed in a multi-center study. Data mining of large-scale genomic variant databases was used to investigate domain-specific vulnerability and conservation of DYNC1H1. We identified ten patients with nine novel mutations in the DYNC1H1 gene. These patients exhibit a broad spectrum of clinical findings, suggesting an overlapping disease manifestation with intermixed phenotypes ranging from neuropathy (peripheral nervous system, PNS) to severe intellectual disability (central nervous system, CNS). Genomic profiling of healthy and patient variant datasets underlines the domain-specific effects of genetic variation in DYNC1H1, specifically on toleration towards missense variants in the linker domain. A retrospective analysis of all published mutations revealed domain-specific genotype–phenotype correlations, i.e., mutations in the dimerization domain with reductions in lower limb strength in DYNC1H1–NMD and motor domain with cerebral malformations in DYNC1H1–NDD. We highlight that the current classification into distinct disease entities does not sufficiently reflect the clinical disease manifestation that clinicians face in the diagnostic work-up of DYNC1H1-related disorders. We propose a novel clinical classification for DYNC1H1-related disorders encompassing a spectrum from DYNC1H1–NMD with an exclusive PNS phenotype to DYNC1H1–NDD with concomitant CNS involvement.
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- 2020
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14. Bi-allelic TTC5 variants cause delayed developmental milestones and intellectual disability
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Geneva LaForce, Danica Ross, Sangmoon Lee, Katherine Johnson, Tawfeg Ben-Omran, Jennifer McEvoy-Venneri, Evren Gumus, Abbir Virani, Arisha Rasheed, Humera Manzoor, Valentina Stanley, Maha S. Zaki, Ashleigh E. Schaffer, Joseph G. Gleeson, and Sadaf Naz
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Male ,medicine.medical_specialty ,Developmental Disabilities ,Biology ,Article ,symbols.namesake ,Molecular genetics ,Intellectual Disability ,Intellectual disability ,Exome Sequencing ,Genetics ,medicine ,Missense mutation ,Humans ,Exome ,Genetic Predisposition to Disease ,Allele ,Child ,Genetics (clinical) ,Alleles ,Genetic Association Studies ,Cerebral atrophy ,Sanger sequencing ,Corpus Callosum Agenesis ,Homozygote ,medicine.disease ,Hypotonia ,Pedigree ,Phenotype ,Child, Preschool ,Mutation ,symbols ,Egypt ,Female ,medicine.symptom ,Transcription Factors - Abstract
BackgroundIntellectual disability syndromes (IDSs) with or without developmental delays affect up to 3% of the world population. We sought to clinically and genetically characterise a novel IDS segregating in five unrelated consanguineous families.MethodsClinical analyses were performed for eight patients with intellectual disability (ID). Whole-exome sequencing for selected participants followed by Sanger sequencing for all available family members was completed. Identity-by-descent (IBD) mapping was carried out for patients in two Egyptian families harbouring an identical variant. RNA was extracted from blood cells of Turkish participants, followed by cDNA synthesis and real-time PCR for TTC5.ResultsPhenotype comparisons of patients revealed shared clinical features of moderate-to-severe ID, corpus callosum agenesis, mild ventriculomegaly, simplified gyral pattern, cerebral atrophy, delayed motor and verbal milestones and hypotonia, presenting with an IDS. Four novel homozygous variants in TTC5: c.629A>G;p.(Tyr210Cys), c.692C>T;p.(Ala231Val), c.787C>T;p.(Arg263Ter) and c.1883C>T;p.(Arg395Ter) were identified in the eight patients from participating families. IBD mapping revealed that c.787C>T;p.(Arg263Ter) is a founder variant in Egypt. Missense variants c.629A>G;p.(Tyr210Cys) and c.692C>T;p.(Ala231Val) disrupt highly conserved residues of TTC5 within the fifth and sixth tetratricopeptide repeat motifs which are required for p300 interaction, while the nonsense variants are predicted to decrease TTC5 expression. Functional analysis of variant c.1883C>T;p.(Arg395Ter) showed reduced TTC5 transcript levels in accordance with nonsense-mediated decay.ConclusionCombining our clinical and molecular data with a recent case report, we identify the core and variable clinical features associated with TTC5 loss-of-function variants and reveal the requirement for TTC5 in human brain development and health.
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- 2020
15. POGLUT1 biallelic mutations cause myopathy with reduced satellite cells, α-dystroglycan hypoglycosylation and a distinctive radiological pattern
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Juan J. Vílchez, Emilia Servián-Morilla, Macarena Cabrera-Serrano, Atsuko Ito, Tiziana Mongini, John F. Brandsema, Shahriar Nafissi, M Takeuchi, Carmen Paradas, Carsten G. Bönnemann, O Lopes Abath Neto, Hideyuki Takeuchi, Ani Taneva, H Hao, Ashutosh Pandey, Robert S. Haltiwanger, Nuria Muelas, L. Medne, Hamed Jafar-Nejad, Eloy Rivas, Teodora Chamova, Volker Straub, Ivailo Tournev, R P Grewal, Ana Töpf, Katherine Johnson, Kristl G. Claeys, Instituto de Salud Carlos III, European Commission, Junta de Andalucía, National Institute of General Medical Sciences (US), National Institutes of Health (US), Japan Society for the Promotion of Science, Takeda Science Foundation, Daiichi-Sankyo, Sanofi, Ultragenyx, Samantha J. Brazzo Foundation, LGMD2D Foundation, Kurt + Peter Foundation, Muscular Dystrophy UK, National Institute of Neurological Disorders and Stroke (US), and Coalition to Cure Calpain 3
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Male ,0301 basic medicine ,Biallelic Mutation ,musculoskeletal diseases ,Glycosylation ,Notch ,Satellite Cells, Skeletal Muscle ,Notch signaling pathway ,Biology ,Muscle disorder ,α-Dystroglycan ,Article ,Pathology and Forensic Medicine ,Muscle dystrophy ,Animals, Genetically Modified ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,0302 clinical medicine ,Satellite cells ,POGLUT1 ,medicine ,Animals ,Humans ,Myocyte ,Muscular dystrophy ,Dystroglycans ,Muscle, Skeletal ,Myopathy ,Muscle dystrophy, Notch, POGLUT1, Satellite cells, a-Dystroglycan ,Genetic Association Studies ,Muscle weakness ,medicine.disease ,Phenotype ,Pedigree ,Drosophila melanogaster ,030104 developmental biology ,Muscular Dystrophies, Limb-Girdle ,Glucosyltransferases ,Mutation ,Cancer research ,Female ,Neurology (clinical) ,medicine.symptom ,030217 neurology & neurosurgery - Abstract
Protein O-glucosyltransferase 1 (POGLUT1) activity is critical for the Notch signaling pathway, being one of the main enzymes responsible for the glycosylation of the extracellular domain of Notch receptors. A biallelic mutation in the POGLUT1 gene has been reported in one family as the cause of an adult-onset limb-girdle muscular dystrophy (LGMD R21; OMIM# 617232). As the result of a collaborative international effort, we have identified the first cohort of 15 patients with LGMD R21, from nine unrelated families coming from different countries, providing a reliable phenotype–genotype and mechanistic insight. Patients carrying novel mutations in POGLUT1 all displayed a clinical picture of limb-girdle muscle weakness. However, the age at onset was broadened from adult to congenital and infantile onset. Moreover, we now report that the unique muscle imaging pattern of “inside-to-outside” fatty degeneration observed in the original cases is indeed a defining feature of POGLUT1 muscular dystrophy. Experiments on muscle biopsies from patients revealed a remarkable and consistent decrease in the level of the NOTCH1 intracellular domain, reduction of the pool of satellite cells (SC), and evidence of α-dystroglycan hypoglycosylation. In vitro biochemical and cell-based assays suggested a pathogenic role of the novel POGLUT1 mutations, leading to reduced enzymatic activity and/or protein stability. The association between the POGLUT1 variants and the muscular phenotype was established by in vivo experiments analyzing the indirect flight muscle development in transgenic Drosophila, showing that the human POGLUT1 mutations reduced its myogenic activity. In line with the well-known role of the Notch pathway in the homeostasis of SC and muscle regeneration, SC-derived myoblasts from patients’ muscle samples showed decreased proliferation and facilitated differentiation. Together, these observations suggest that alterations in SC biology caused by reduced Notch1 signaling result in muscular dystrophy in LGMD R21 patients, likely with additional contribution from α-dystroglycan hypoglycosylation. This study settles the muscular clinical phenotype linked to POGLUT1 mutations and establishes the pathogenic mechanism underlying this muscle disorder. The description of a specific imaging pattern of fatty degeneration and muscle pathology with a decrease of α-dystroglycan glycosylation provides excellent tools which will help diagnose and follow up LGMD R21 patients., This work was supported in part by the Instituto de Salud Carlos III and FEDER (FIS PI16-01843 to C. Paradas and JR15/00042 to M. Cabrera-Serrano), the Consejería de Salud, Junta de Andalucía (PI-0085-2016 and PE-S1275 to C. Paradas, and B-0005-2017 to M. Cabrera-Serrano), NIH/NIGMS (R01GM084135 and R35GM130317 to H. Jafar-Nejad, and R01GM061126 to R.S. Haltiwanger), JSPS KAKENHI Grants-in-Aid for Research Activity Start-up and Scientific Research (B) (JP17H06743 and JP19H03176 to H. Takeuchi), and Takeda Science Foundation and Daiichi Sankyo Foundation of Life Science (to H. Takeuchi). MYO-SEQ has been supported by Sanofi Genzyme, Ultragenyx, the LGMD2I Research Fund, Samantha J Brazzo Foundation, LGMD2D Foundation, Kurt + Peter Foundation, Muscular Dystrophy UK and Coalition to Cure Calpain 3. Work in CGB’s group is supported by NINDS/NIH intramural funds.
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- 2020
16. Antimicrobial stewardship in the treatment of skin and soft tissue infections
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Hayden L. Smith, Sudhir C. Kumar, William J. Yost, Julie A. Gibbons, Jayme M. Danielson, Amanda M. Bushman, Jonathan J. Wadle, and Katherine Johnson Duggins
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Male ,0301 basic medicine ,medicine.medical_specialty ,Epidemiology ,medicine.drug_class ,030106 microbiology ,Antibiotics ,Administration, Oral ,Inappropriate Prescribing ,Antimicrobial Stewardship ,03 medical and health sciences ,0302 clinical medicine ,Pharmacotherapy ,Anti-Infective Agents ,Internal medicine ,Humans ,Antimicrobial stewardship ,Medicine ,030212 general & internal medicine ,Skin Diseases, Infectious ,Medical prescription ,Intensive care medicine ,Aged ,Antiinfective agent ,business.industry ,Soft Tissue Infections ,Health Policy ,Medical record ,Incidence (epidemiology) ,Public Health, Environmental and Occupational Health ,Middle Aged ,Antimicrobial ,Treatment Outcome ,Infectious Diseases ,Administration, Intravenous ,Female ,business - Abstract
Research on treating skin and soft tissue infections (SSTI) has shown improved patient outcomes with effective pharmaceutic prescribing. Antimicrobial stewardship programs can reduce consequences of broad-spectrum antimicrobial administration in SSTI treatment.Prospective and historic control data were collected during two 7-month periods. Intervention consisted of implementing a new SSTI evidence-based treatment algorithm and provider education, including calls and medical record notes targeted at physicians.Of 412 patients, 76 and 86 were found eligible from the historic and intervention groups, respectively. The intervention group had a higher prevalence of appropriate antibiotic usage (33% vs 19%, respectively; P = .04). There was a lower median number of days from intravenous antibiotic therapy to oral conversion (3 vs 5; P .0001) and a lower median number of days of antipseudomonal antibiotic use (3 vs 5; P = .03) in the intervention group, respectively. The intervention group also had fewer documented SSTI treatment complications (1% vs 8%, respectively; P = .04). The positive outcomes outlined demonstrate potential impacts made from the use of multidisciplinary antibiotic stewardship initiatives.Appropriate use of antimicrobial agents under the direction of an antimicrobial stewardship program can lead to improved outcomes for patients being treated for SSTIs.
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- 2017
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17. Multisystem proteinopathy due to a homozygous p.Arg159His VCP mutation : a tale of the unexpected
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Stuart Maudsley, Jonathan Baets, Katherine Johnson, Abdelkrim Azmi, Andreas Hofmann, Volker Straub, Christoph S. Clemen, Ana Töpf, Willem De Ridder, Rolf Schröder, Ludwig Eichinger, Jan De Bleecker, and Peter De Jonghe
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0301 basic medicine ,Pathology ,medicine.medical_specialty ,Weakness ,VCP/P97 ,VALOSIN ,03 medical and health sciences ,symbols.namesake ,0302 clinical medicine ,medicine ,Medicine and Health Sciences ,Dementia ,INCLUSION-BODY MYOPATHY ,Myopathy ,Index case ,Sanger sequencing ,SPECTRUM ,business.industry ,Parkinsonism ,medicine.disease ,Phenotype ,Multisystem proteinopathy ,030104 developmental biology ,PAGET-DISEASE ,symbols ,GENOTYPE-PHENOTYPE ,Neurology (clinical) ,Human medicine ,medicine.symptom ,business ,030217 neurology & neurosurgery - Abstract
ObjectiveTo assess the clinical, radiologic, myopathologic, and proteomic findings in a patient manifesting a multisystem proteinopathy due to a homozygous valosin-containing protein gene (VCP) mutation previously reported to be pathogenic in the heterozygous state.MethodsWe studied a 36-year-old male index patient and his father, both presenting with progressive limb-girdle weakness. Muscle involvement was assessed by MRI and muscle biopsies. We performed whole-exome sequencing and Sanger sequencing for segregation analysis of the identified p.Arg159His VCP mutation. To dissect biological disease signatures, we applied state-of-the-art quantitative proteomics on muscle tissue of the index case, his father, 3 additional patients with VCP-related myopathy, and 3 control individuals.ResultsThe index patient, homozygous for the known p.Arg159His mutation in VCP, manifested a typical VCP-related myopathy phenotype, although with a markedly high creatine kinase value and a relatively early disease onset, and Paget disease of bone. The father exhibited a myopathy phenotype and discrete parkinsonism, and multiple deceased family members on the maternal side of the pedigree displayed a dementia, parkinsonism, or myopathy phenotype. Bioinformatic analysis of quantitative proteomic data revealed the degenerative nature of the disease, with evidence suggesting selective failure of muscle regeneration and stress granule dyshomeostasis.ConclusionWe report a patient showing a multisystem proteinopathy due to a homozygous VCP mutation. The patient manifests a severe phenotype, yet fundamental disease characteristics are preserved. Proteomic findings provide further insights into VCP-related pathomechanisms.
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- 2020
18. First clinical and myopathological description of a myofibrillar myopathy with congenital onset and homozygous mutation in FLNC
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Wolfram Kress, Ana Töpf, Katherine Johnson, Peter F.M. van der Ven, Teresinha Evangelista, Volker Straub, Albert Sickmann, Laxmikanth Kollipara, Joachim Weis, Andreas Roos, Michael R. Wilson, Dieter O. Fürst, Heike Kölbel, Ulrike Schara, and Kay Nolte
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Male ,Adolescent ,Proteome ,Filamins ,Medizin ,Biology ,Filamin ,03 medical and health sciences ,Mutant protein ,Genetics ,medicine ,Humans ,Myocyte ,FLNC ,ddc:610 ,Child ,Genetics (clinical) ,030304 developmental biology ,0303 health sciences ,Sarcolemma ,Homozygote ,030305 genetics & heredity ,Proteolytic enzymes ,Middle Aged ,Actin cytoskeleton ,medicine.disease ,Congenital myopathy ,Molecular biology ,Child, Preschool ,Myopathies, Structural, Congenital - Abstract
Filamin C (encoded by the FLNC gene) is a large actin-cross-linking protein involved in shaping the actin cytoskeleton in response to signaling events both at the sarcolemma and at myofibrillar Z-discs of cross-striated muscle cells. Multiple mutations in FLNC are associated with myofibrillar myopathies of autosomal-dominant inheritance. Here, we describe for the first time a boy with congenital onset of generalized muscular hypotonia and muscular weakness, delayed motor development but no cardiac involvement associated with a homozygous FLNC mutation c.1325C>G (p.Pro442Arg). We performed ultramorphological, proteomic, and functional investigations as well as immunological studies of known marker proteins for dominant filaminopathies. We show that the mutant protein is expressed in similar quantities as the wild-type variant in control skeletal muscle fibers. The proteomic signature of quadriceps muscle is altered and ultrastructural perturbations are evident. Moreover, filaminopathy marker proteins are comparable both in our homozygous and a dominant control case (c.5161delG). Biochemical investigations demonstrate that the recombinant mutant protein is less stable and more prone to degradation by proteolytic enzymes than the wild-type variant. The unusual congenital presentation of the disease clearly demonstrates that homozygosity for mutations in FLNC severely aggravates the phenotype.
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- 2020
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19. Improved Criteria for the Classification of Titin Variants in Inherited Skeletal Myopathies
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Mridul Johari, Sara Lehtinen, Ana Töpf, Meharji Arumilli, Sara Gibertini, Alessandra Ruggieri, Fabiana Fattori, Hanns Lochmüller, Peter Hackman, Bjarne Udd, Marius Kuhn, Vincenzo Nigro, Marco Savarese, Dieter Gläser, Borut Peterlin, Anna Rubegni, Aleš Maver, Volker Straub, Annalaura Torella, Ami Mankodi, Lenka Fajkusová, Filippo M. Santorelli, Katherine Johnson, Rachel Thompson, Teresa Giugliano, Benedikt Schoser, Marina Mora, Sini Penttilä, Savarese, M., Johari, M., Johnson, K., Arumilli, M., Torella, A., Topf, A., Rubegni, A., Kuhn, M., Giugliano, T., Glaser, D., Fattori, F., Thompson, R., Penttila, S., Lehtinen, S., Gibertini, S., Ruggieri, A., Mora, M., Maver, A., Peterlin, B., Mankodi, A., Lochmuller, H., Santorelli, F. M., Schoser, B., Fajkusova, L., Straub, V., Nigro, V., Hackman, P., and Udd, B.
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0301 basic medicine ,cardiomyopathies ,medicine.medical_specialty ,Titin ,data sharing ,clinical interpretation ,skeletal muscle disorders ,Genomics ,Computational biology ,03 medical and health sciences ,0302 clinical medicine ,Muscular Diseases ,skeletal muscle disorder ,Humans ,Medicine ,Connectin ,Allele frequency ,Genetic association ,cardiomyopathie ,biology ,Molecular pathology ,business.industry ,Genetic heterogeneity ,Genetic disorder ,medicine.disease ,3. Good health ,030104 developmental biology ,Neurology ,Practice Guidelines as Topic ,biology.protein ,Medical genetics ,Neurology (clinical) ,business ,030217 neurology & neurosurgery - Abstract
Background Extensive genetic screening results in the identification of thousands of rare variants that are difficult to interpret. Because of its sheer size, rare variants in the titin gene (TTN) are detected frequently in any individual. Unambiguous interpretation of molecular findings is almost impossible in many patients with myopathies or cardiomyopathies. Objective To refine the current classification framework for TTN-associated skeletal muscle disorders and standardize the interpretation of TTN variants. Methods We used the guidelines issued by the American College of Medical Genetics and Genomics (ACMG) and the Association for Molecular Pathology (AMP) to re-analyze TTN genetic findings from our patient cohort. Results We identified in the classification guidelines three rules that are not applicable to titin-related skeletal muscle disorders; six rules that require disease-/gene-specific adjustments and four rules requiring quantitative thresholds for a proper use. In three cases, the rule strength need to be modified. Conclusions We suggest adjustments are made to the guidelines. We provide frequency thresholds to facilitate filtering of candidate causative variants and guidance for the use and interpretation of functional data and co-segregation evidence. We expect that the variant classification framework for TTN-related skeletal muscle disorders will be further improved along with a better understanding of these diseases.
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- 2020
20. Sequential targeted exome sequencing of 1001 patients affected by unexplained limb-girdle weakness
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Ana Töpf, Katherine Johnson, Adam Bates, Lauren Phillips, Katherine R. Chao, Eleina M. England, Kristen M. Laricchia, Thomas Mullen, Elise Valkanas, Liwen Xu, Marta Bertoli, Alison Blain, Ana B. Casasús, Jennifer Duff, Magdalena Mroczek, Sabine Specht, Monkol Lek, Monica Ensini, Daniel G. MacArthur, Ela Akay, Jorge Alonso-Pérez, Jonathan Baets, Nina Barisic, Alexandra Bastian, Sabine Borell, Teodora Chamova, Kristl Claeys, Jaume Colomer, Sandra Coppens, Nicolas Deconinck, Willem de Ridder, Jordi Díaz-Manera, Cristina Domínguez-González, Alexis Duncan, Hacer Durmus, Nagia A. Fahmy, Maria Elena Farrugia, Roberto Fernández-Torrón, Lidia Gonzalez-Quereda, Jana Haberlova, Maja von der Hagen, Andreas Hahn, Antonia Jakovčević, Ivonne Jerico Pascual, Solange Kapetanovic, Viktorija Kenina, Janbernd Kirschner, Andrea Klein, Heike Kölbel, Anna Kostera-Pruszczyk, Richa Kulshrestha, Jaana Lähdetie, Mahsa Layegh, Cheryl Longman, Adolfo López de Munain, Wolfgang Loscher, Anna Lusakowska, Paul Maddison, Armelle Magot, Anirban Majumdar, Pilar Martí, Amaia Martínez Arroyo, Radim Mazanec, Sandra Mercier, Tiziana Mongini, Nuria Muelas, Andrés Nascimento, Shahriar Nafissi, Shirin Omidi, Carlos Ortez, Stéphanie Paquay, Yann Pereon, Stojan Perić, Valentina Ponzalino, Vidosava Rakočević Stojanović, Gauthier Remiche, Aida Rodríguez Sainz, Sabine Rudnik, Iciar Sanchez Albisua, Manuela Santos, Ulrike Schara, Andriy Shatillo, Jadranka Sertić, Ulrich Stephani, Sonja Strang-Karlsson, Yves Sznajer, Ani Tanev, Ivailo Tournev, Peter Van den Bergh, Vinciane Van Parijs, Juan Vílchez, Katharina Vill, John Vissing, Carina Wallgren-Pettersson, Julia Wanschitz, Tracey Willis, Nanna Witting, Miren Zulaica, Volker Straub, MYO-SEQ Consortium, HUSLAB, HUS Children and Adolescents, Clinicum, Medicum, and Claeys, Kristl
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0301 basic medicine ,targeted exome analysis ,Neuromuscular disease ,Medizin ,Anoctamins ,030105 genetics & heredity ,Bioinformatics ,3124 Neurology and psychiatry ,DNA sequencing ,Article ,03 medical and health sciences ,genetic diagnosis ,limb-girdle weakness ,neuromuscular disease ,next-generation sequencing ,3123 Gynaecology and paediatrics ,Exome Sequencing ,Medicine ,Humans ,Exome ,Gene ,Genetics (clinical) ,Exome sequencing ,SGCA ,RYR1 ,Genetic heterogeneity ,business.industry ,Sciences bio-médicales et agricoles ,medicine.disease ,Phenotype ,3. Good health ,030104 developmental biology ,Muscular Dystrophies, Limb-Girdle ,Glucosyltransferases ,Human medicine ,business - Abstract
Several hundred genetic muscle diseases have been described, all of which are rare. Their clinical and genetic heterogeneity means that a genetic diagnosis is challenging. We established an international consortium, MYO-SEQ, to aid the work-ups of muscle disease patients and to better understand disease etiology., info:eu-repo/semantics/published
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- 2020
21. SMCHD1 mutation spectrum for facioscapulohumeral muscular dystrophy type 2 (FSHD2) and Bosma arhinia microphthalmia syndrome (BAMS) reveals disease-specific localisation of variants in the ATPase domain
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Teresinha Evangelista, Silvère M. van der Maarel, Sabrina Sacconi, Meindert Lamers, Steven A. Moore, Nienke van der Stoep, Natalie D Shaw, Tahseen Mozaffar, David San Leon Granado, Richard J.L.F. Lemmers, Volker Straub, Alessandra Ferlini, Ana Töpf, Rita Selvatici, Patrick J. van der Vliet, Rabi Tawil, Virginia Kimonis, Baziel G.M. van Engelen, Katherine Johnson, and Nicol C. Voermans
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Male ,DUX4 ,Chromosomal Proteins, Non-Histone ,ATPase ,Mutation, Missense ,Socio-culturale ,Locus (genetics) ,Nose ,ATPase domain ,Choanal Atresia ,Article ,Protein Domains ,Genetics ,medicine ,Missense mutation ,Facioscapulohumeral muscular dystrophy ,Humans ,Microphthalmos ,Genetics (clinical) ,BAMS ,Adenosine Triphosphatases ,FSHD ,D4Z4 ,biology ,SMCHD1 ,food and beverages ,Genetic Variation ,Methylation ,DNA Methylation ,medicine.disease ,Disorders of movement Donders Center for Medical Neuroscience [Radboudumc 3] ,Phenotype ,Muscular Dystrophy, Facioscapulohumeral ,mutation spectrum ,Mutation ,biology.protein ,Female ,DNA hypomethylation - Abstract
BackgroundVariants in the Structural Maintenance of Chromosomes flexible Hinge Domain-containing protein 1 (SMCHD1) can cause facioscapulohumeral muscular dystrophy type 2 (FSHD2) and the unrelated Bosma arhinia microphthalmia syndrome (BAMS). In FSHD2, pathogenic variants are found anywhere in SMCHD1 while in BAMS, pathogenic variants are restricted to the extended ATPase domain. Irrespective of the phenotypic outcome, both FSHD2-associated and BAMS-associated SMCHD1 variants result in quantifiable local DNA hypomethylation. We compared FSHD2, BAMS and non-pathogenic SMCHD1 variants to derive genotype–phenotype relationships.MethodsExamination of SMCHD1 variants and methylation of the SMCHD1-sensitive FSHD locus DUX4 in 187 FSHD2 families, 41 patients with BAMS and in control individuals. Analysis of variants in a three-dimensional model of the ATPase domain of SMCHD1.ResultsDUX4 methylation analysis is essential to establish pathogenicity of SMCHD1 variants. Although the FSHD2 mutation spectrum includes all types of variants covering the entire SMCHD1 locus, missense variants are significantly enriched in the extended ATPase domain. Identification of recurrent variants suggests disease-specific residues for FSHD2 and in BAMS, consistent with a largely disease-specific localisation of variants in SMCHD1.ConclusionsThe localisation of missense variants within the ATPase domain of SMCHD1 may contribute to the differences in phenotypic outcome.
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- 2019
22. The influence of personality traits on attitudes towards climate change – An exploratory study
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Rachel Morgan Griffith, Kathrin Rothermich, Monica Marie Beingolea, and Erika Katherine Johnson
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media_common.quotation_subject ,05 social sciences ,Exploratory research ,050109 social psychology ,Context (language use) ,Empathy ,050105 experimental psychology ,Risk perception ,Perspective-taking ,Openness to experience ,medicine ,Anxiety ,0501 psychology and cognitive sciences ,sense organs ,Big Five personality traits ,medicine.symptom ,Psychology ,Social psychology ,General Psychology ,media_common - Abstract
This study used a trait-level approach to understanding pro-environmental behavior in the context of climate change. We asked 194 adult participants to report their belief in climate change and their risk perception and then tested the correlation between self-reported Big Five traits, trait-level anxiety, and empathy. Our analysis revealed that Openness, Perspective Taking, sex, and age correlate with climate change attitudes. These results increase our understanding of environmental challenges to the general public and offer implications for future research on how to execute pro-environmental strategies.
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- 2021
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23. Extending the clinical and mutational spectrum of TRIM32 -related myopathies in a non-Hutterite population
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Mark Busby, Rita Barresi, L. Phillips, Tiziana Mongini, Hacer Durmus, Jonathan Baets, Fiona Norwood, Judith N Hudson, James Miller, Peter De Jonghe, Shahriar Nafissi, Katherine Johnson, Ana Töpf, Monkol Lek, Stojan Peric, Daniel G. MacArthur, Marta Bertoli, Willem De Ridder, Shirin Jamal-Omidi, Vidosava Rakocevic Stojanovic, Volker Straub, Tine Deconinck, and Anna Łusakowska
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Adult ,Male ,Pathology ,medicine.medical_specialty ,Myopathy ,Ubiquitin-Protein Ligases ,Nonsense mutation ,Population ,Ethnic Groups ,Muscle disorder ,Muscular Dystrophies ,Frameshift mutation ,Tripartite Motif Proteins ,03 medical and health sciences ,Limb-Girdle ,0302 clinical medicine ,Muscular Diseases ,Missense mutation ,Medicine ,Humans ,Muscular dystrophy ,education ,Exome sequencing ,Muscle disease ,education.field_of_study ,Neuromuscular ,Female ,Magnetic Resonance Imaging ,Middle Aged ,Muscle, Skeletal ,Muscular Dystrophies, Limb-Girdle ,Mutation ,Transcription Factors ,business.industry ,Skeletal ,medicine.disease ,3. Good health ,Psychiatry and Mental health ,Muscle ,Surgery ,Neurology (clinical) ,Human medicine ,medicine.symptom ,business ,030217 neurology & neurosurgery - Abstract
Introduction TRIM32-related myopathies represent a phenotypic spectrum of a rare autosomal recessive muscle disorder. The disease is described as a mild and progressive myopathy without characteristic clinical features. Originally classified as limb-girdle muscular dystrophy (LGMD) 2H (OMIM #254110), the disorder was first identified in the Hutterite population and the homozygous TRIM32 founder mutation, p.Asp487Asn, was identified as the cause of this disease.1 Only seven patients with definite non-Hutterite TRIM32-related myopathy have been reported in the literature. Apart from two missense mutations residing in the NHL repeats of TRIM32, only deletions, frameshift and nonsense mutations have been reported.2 Having applied next generation sequencing technologies to over 1000 patients with suspected genetic muscle disorders, we present nine patients with TRIM32-related myopathies and three patients with a homozygous TRIM32 variant of unknown significance (VUS). Subjects and methods DNA samples from 1000 patients with unexplained limb-girdle muscle weakness and/or elevated serum creatine kinase (CK) levels were gathered through the MYO-SEQ project. Samples were processed and whole exome sequencing (WES) performed as described previously.3 Additional patients with TRIM32-related myopathy were diagnosed by the Northern Molecular Genetics Service (NMGS) diagnostic laboratory through panel sequencing of 32 LGMD genes. Variants were classified according to ACMG guidelines.4 MRI imaging was performed for eight patients on a 1.5T MRI platform. Muscle biopsies for all patients were analysed following standard histological techniques. Results Genetic findings Of the 1000 MYO-SEQ patients, we identified 36 with rare coding variants in TRIM32 (minor allele frequency
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- 2019
24. ANO5 mutations in the Polish limb girdle muscular dystrophy patients: Effects on the protein structure
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Maria Jolanta Redowicz, Anna Kamińska, Adam Jarmuła, Edyta Rosiak, Jakub Piotr Fichna, Stanislaw Dunin-Horkawicz, Anna Macias, Ana Töpf, Volker Straub, Krzysztof Szczepaniak, Malgorzata Topolewska, Anna Łusakowska, Aleksandra Maruszak, and Katherine Johnson
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0301 basic medicine ,Adult ,Male ,medicine.medical_specialty ,Heterozygote ,lcsh:Medicine ,Anoctamins ,Biology ,medicine.disease_cause ,Article ,Frameshift mutation ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,Chloride Channels ,Genetics research ,medicine ,Missense mutation ,Humans ,Genetic Predisposition to Disease ,Muscular dystrophy ,lcsh:Science ,Muscle, Skeletal ,Exome sequencing ,Genetics ,Mutation ,Multidisciplinary ,lcsh:R ,Computational Biology ,Neuromuscular disease ,medicine.disease ,Phenotype ,Computational biology and bioinformatics ,030104 developmental biology ,Muscular Dystrophies, Limb-Girdle ,Medical genetics ,lcsh:Q ,Female ,Poland ,Medical genomics ,030217 neurology & neurosurgery ,Limb-girdle muscular dystrophy - Abstract
LGMD2L is a subtype of limb-girdle muscular dystrophy (LGMD), caused by recessive mutations in ANO5, encoding anoctamin-5 (ANO5). We present the analysis of five patients with skeletal muscle weakness for whom heterozygous mutations within ANO5 were identified by whole exome sequencing (WES). Patients varied in the age of the disease onset (from 22 to 38 years) and severity of the morphological and clinical phenotypes. Out of the nine detected mutations one was novel (missense p.Lys132Met, accompanied by p.His841Asp) and one was not yet characterized in the literature (nonsense, p.Trp401Ter, accompanied by p.Asp81Gly). The p.Asp81Gly mutation was also identified in another patient carrying a p.Arg758Cys mutation as well. Also, a c.191dupA frameshift (p.Asn64LysfsTer15), the first described and common mutation was identified. Mutations were predicted by in silico tools to have damaging effects and are likely pathogenic according to criteria of the American College of Medical Genetics and Genomics (ACMG). Indeed, molecular modeling of mutations revealed substantial changes in ANO5 conformation that could affect the protein structure and function. In addition, variants in other genes associated with muscle pathology were identified, possibly affecting the disease progress. The presented data indicate that the identified ANO5 mutations contribute to the observed muscle pathology and broaden the genetic spectrum of LGMD myopathies.
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- 2018
25. Muscular dystrophy with arrhythmia caused by loss-of-function mutations in
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Volker Straub, Cécile Masson, Anne Boland, Rabah Ben Yaou, Ana Töpf, Bob Asselbergh, Thierry Maisonobe, Roland F.R. Schindler, Sofie Symoens, Maud Beuvin, Gisèle Bonne, Jan De Bleecker, Jean-François Deleuze, Thomas Brand, Peter De Jonghe, Jonathan Baets, Katherine Johnson, Willem De Ridder, Isabelle Nelson, Bruno Eymard, Boel De Paepe, British Heart Foundation, The Magdi Yacoub Institute, University of Antwerp (UA), VIB Molecular Genetics, Universiteit Gent = Ghent University (UGENT), Centre de recherche en Myologie – U974 SU-INSERM, Institut National de la Santé et de la Recherche Médicale (INSERM)-Sorbonne Université (SU), Institut de Myologie, Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Association française contre les myopathies (AFM-Téléthon)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Imagine - Institut des maladies génétiques (IHU) (Imagine - U1163), Institut National de la Santé et de la Recherche Médicale (INSERM)-Université Paris Cité (UPCité), Centre National de Génotypage (CNG), Commissariat à l'énergie atomique et aux énergies alternatives (CEA), Institut de Biologie François JACOB (JACOB), Direction de Recherche Fondamentale (CEA) (DRF (CEA)), Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA), Centre National de Recherche en Génomique Humaine (CNRGH), CHU Pitié-Salpêtrière [AP-HP], Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Sorbonne Université (SU), Center for Medical Genetics [Ghent], Ghent University Hospital, Centre pour la recherche économique et ses applications (CEPREMAP), Département d'économie de l'ENS-PSL (ECO ENS-PSL), École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL)-École normale supérieure - Paris (ENS-PSL), Université Paris sciences et lettres (PSL)-Université Paris sciences et lettres (PSL), Newcastle University [Newcastle], Institute of Genetic Medicine [Newcastle], and Department of Neurology
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0301 basic medicine ,Pathology ,medicine.medical_specialty ,Heart disease ,LIMB-GIRDLE ,PROTEINS ,[SDV]Life Sciences [q-bio] ,Article ,03 medical and health sciences ,0302 clinical medicine ,Cardiac conduction ,Medicine and Health Sciences ,Medicine ,Muscular dystrophy ,Myopathy ,Genetics (clinical) ,Loss function ,Subclinical infection ,biology ,business.industry ,Skeletal muscle ,medicine.disease ,030104 developmental biology ,medicine.anatomical_structure ,biology.protein ,Creatine kinase ,Human medicine ,Neurology (clinical) ,medicine.symptom ,business ,030217 neurology & neurosurgery - Abstract
ObjectiveTo study the genetic and phenotypic spectrum of patients harboring recessive mutations in BVES.MethodsWe performed whole-exome sequencing in a multicenter cohort of 1929 patients with a suspected hereditary myopathy, showing unexplained limb-girdle muscular weakness and/or elevated creatine kinase levels. Immunohistochemistry and mRNA experiments on patients' skeletal muscle tissue were performed to study the pathogenicity of identified loss-of-function (LOF) variants in BVES.ResultsWe identified 4 individuals from 3 families harboring homozygous LOF variants in BVES, the gene that encodes for Popeye domain containing protein 1 (POPDC1). Patients showed skeletal muscle involvement and cardiac conduction abnormalities of varying nature and severity, but all exhibited at least subclinical signs of both skeletal muscle and cardiac disease. All identified mutations lead to a partial or complete loss of function of BVES through nonsense-mediated decay or through functional changes to the POPDC1 protein.ConclusionsWe report the identification of homozygous LOF mutations in BVES, causal in a young adult-onset myopathy with concomitant cardiac conduction disorders in the absence of structural heart disease. These findings underline the role of POPDC1, and by extension, other members of this protein family, in striated muscle physiology and disease. This disorder appears to have a low prevalence, although it is probably underdiagnosed because of its striking phenotypic variability and often subtle yet clinically relevant manifestations, particularly concerning the cardiac conduction abnormalities.
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- 2018
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26. A novel compound heterozygous mutation in the POMK gene causing limb-girdle muscular dystrophy-dystroglycanopathy in a sib pair
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Sonja Strang-Karlsson, Maria Williams, Olivera Casar-Borota, Carina Wallgren-Pettersson, L. Xu, Volker Straub, Daniel G. MacArthur, Ana Töpf, Monkol Lek, Katherine Johnson, Clinicum, University of Helsinki, Children's Hospital, Medicum, Department of Medical and Clinical Genetics, HUS Children and Adolescents, University of Helsinki, Clinicum, and University of Helsinki, Medicum
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0301 basic medicine ,Male ,medicine.medical_specialty ,Adolescent ,Nonsense mutation ,Mutation, Missense ,030105 genetics & heredity ,Compound heterozygosity ,Article ,3124 Neurology and psychiatry ,03 medical and health sciences ,symbols.namesake ,POMK ,Internal medicine ,medicine ,Missense mutation ,Humans ,Muscular dystrophy ,Child ,Dystroglycans ,Muscle, Skeletal ,Genetics (clinical) ,Sanger sequencing ,Muscle Weakness ,biology ,business.industry ,Siblings ,3112 Neurosciences ,medicine.disease ,3. Good health ,Endocrinology ,Dystroglycanopathy ,Neurology ,Muscular Dystrophies, Limb-Girdle ,MDDGCI2 ,Limb-girdle muscular dystrophy-dystroglycanopathy type 12 C ,Pediatrics, Perinatology and Child Health ,Mutation (genetic algorithm) ,symbols ,biology.protein ,LGMD12C ,Creatine kinase ,Female ,Neurology (clinical) ,business ,Protein Kinases ,Protein-O-mannosyl kinase ,Limb-girdle muscular dystrophy - Abstract
We describe two Finnish siblings in whom an incidentally detected elevated creatine kinase activity eventually led to a diagnosis of limb-girdle muscular dystrophy-dystroglycanopathy (Type C12; MDDGC12). When diagnosed at age 10 and 13 years, they were mildly affected with a slow or non-progressive disease course. The main symptoms comprised infrequent hip cramps triggered by flexion, neck cramps triggered by yawning, transient growing pains, calf hypertrophy and mild proximal muscle weakness. Their cognitive and motor developments were unremarkable and they were physically active. Whole-exome sequencing revealed compound heterozygous mutations, both of which were novel, in the protein O-mannosyl kinase (POMK) gene in both siblings; a missense mutation, p.Pro322Leu (c.965C > T), and a nonsense mutation, p.Arg46Ter (c.136C > T). The results were confirmed by Sanger sequencing, showing that the parents were heterozygous carriers of one mutation each. This report adds to the literature by providing phenotype and genotype data on this ultra-rare POMK-related dystroglycanopathy. (C) 2018 Elsevier B.V. All rights reserved.
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- 2018
27. Limb girdle muscular dystrophy due to mutations in POMT2
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Sofie Thurø Østergaard, Katherine Johnson, Tanya Stojkovic, Thomas Krag, Willem De Ridder, Peter De Jonghe, Jonathan Baets, Kristl G Claeys, Roberto Fernández-Torrón, Lauren Phillips, Ana Topf, Jaume Colomer, Shahriar Nafissi, Shirin Jamal-Omidi, Celine Bouchet-Seraphin, France Leturcq, Daniel G MacArthur, Monkol Lek, Liwen Xu, Isabelle Nelson, Volker Straub, John Vissing, University of Copenhagen = Københavns Universitet (UCPH), Newcastle University [Newcastle], Institut de Myologie, Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Association française contre les myopathies (AFM-Téléthon)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), Vlaams Instituut voor Biotechnologie [Ghent, Belgique] (VIB), University of Antwerp (UA), Antwerp University Hospital [Edegem] (UZA), University Hospitals Leuven [Leuven], Catholic University of Leuven - Katholieke Universiteit Leuven (KU Leuven), Biodonostia Health Research Institute [Donostia-San Sebastian, Spain] (IIS Biodonostia), Hospital Sant Joan de Déu [Barcelona], Tehran University of Medical Sciences (TUMS), AP-HP - Hôpital Bichat - Claude Bernard [Paris], Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP), Hôpital Cochin [AP-HP], Massachusetts General Hospital [Boston], Broad Institute of MIT and Harvard (BROAD INSTITUTE), Harvard Medical School [Boston] (HMS)-Massachusetts Institute of Technology (MIT)-Massachusetts General Hospital [Boston], Centre de recherche en Myologie – U974 SU-INSERM, Institut National de la Santé et de la Recherche Médicale (INSERM)-Sorbonne Université (SU), and Allamand, Valérie
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0301 basic medicine ,medicine.medical_specialty ,[SDV]Life Sciences [q-bio] ,03 medical and health sciences ,0302 clinical medicine ,Atrophy ,Internal medicine ,Medicine ,Muscular dystrophy ,Gluteal muscles ,Biology ,Muscle biopsy ,medicine.diagnostic_test ,business.industry ,Anatomy ,medicine.disease ,Hyperintensity ,[SDV] Life Sciences [q-bio] ,Psychiatry and Mental health ,030104 developmental biology ,medicine.anatomical_structure ,Cardiology ,Congenital muscular dystrophy ,Surgery ,Human medicine ,Neurology (clinical) ,business ,030217 neurology & neurosurgery ,Hamstring ,Limb-girdle muscular dystrophy - Abstract
PDF Neuromuscular Research paper Limb girdle muscular dystrophy due to mutations in POMT2 Sofie Thurø Østergaard1, Katherine Johnson2, Tanya Stojkovic3, Thomas Krag1, Willem De Ridder4,5,6, Peter De Jonghe4,5,6, Jonathan Baets4,5,6, Kristl G Claeys7,8, Roberto Fernández-Torrón9, Lauren Phillips2, Ana Topf2, Jaume Colomer10, Shahriar Nafissi11, Shirin Jamal-Omidi11, Celine Bouchet-Seraphin12, France Leturcq13, Daniel G MacArthur14,15, Monkol Lek14,15, Liwen Xu14,15, Isabelle Nelson16, Volker Straub2, John Vissing1 Author affiliations Abstract Background Mutations in the gene coding for protein O-mannosyl-transferase 2 (POMT2) are known to cause severe congenital muscular dystrophy, and recently, mutations in POMT2 have also been linked to a milder limb-girdle muscular dystrophy (LGMD) phenotype, named LGMD type 2N (LGMD2N). Only four cases have been reported so far. ClinicalTrials.gov ID: NCT02759302 Methods We report 12 new cases of LGMD2N, aged 1863 years. Muscle involvement was assessed by MRI, muscle strength testing and muscle biopsy analysis. Other clinical features were also recorded. Results Presenting symptoms were difficulties in walking, pain during exercise, delayed motor milestones and learning disabilities at school. All had some degree of cognitive impairment. Brain MRIs were abnormal in 3 of 10 patients, showing ventricular enlargement in one, periventricular hyperintensities in another and frontal atrophy of the left hemisphere in a third patient. Most affected muscle groups were hip and knee flexors and extensors on strength testing. On MRI, most affected muscles were hamstrings followed by paraspinal and gluteal muscles. The 12 patients in our cohort carried 11 alleles with known mutations, whereas 11 novel mutations accounted for the remaining 13 alleles. Conclusion We describe the first cohort of patients with LGMD2N and show that unlike other LGMD types, all patients had cognitive impairment. Primary muscle involvement was found in hamstring, paraspinal and gluteal muscles on MRI, which correlated well with reduced muscle strength in hip and knee flexors and extensors. The study expands the mutational spectrum for LGMD2N, with the description of 11 novel POMT2 mutations in the association with LGMD2N. Clinical trial registration NCT02759302.
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28. P.82First clinical and neuropathological description of a myofibrillar myopathy with congenital onset based on a homozygous recessive FLNC mutation
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Wolfram Kress, Ulrike Schara, Kay Nolte, Laxmikanth Kollipara, Joachim Weis, Andreas Roos, Dieter O. Fürst, Heike Kölbel, Ana Töpf, Katherine Johnson, V. Straub, and P.F.M. van der Ven
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Pathology ,medicine.medical_specialty ,Neurology ,business.industry ,Pediatrics, Perinatology and Child Health ,Mutation (genetic algorithm) ,Myofibrillar myopathy ,Medicine ,Neurology (clinical) ,FLNC ,business ,Genetics (clinical) ,Congenital onset - Published
- 2019
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29. FSHD type 2 and Bosma arhinia microphthalmia syndrome: Two faces of the same mutation
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John Graham, Stephen J. Tapscott, Natalie D. Shaw, Rabi Tawil, Angela E. Lin, Silvère M. van der Maarel, U.A. Badrising, Sabrina Sacconi, Steven A. Moore, Marjolein Kriek, Richard J.L.F. Lemmers, Ana Töpf, Volker Straub, Solange Kapetanovic García, Nicol C. Voermans, Katherine Johnson, Corinne G.C. Horlings, Karlien Mul, Marlinde L van den Boogaard, Patrick J. van der Vliet, Harrison Brand, Baziel G.M. van Engelen, and Teresinha Evangelista
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0301 basic medicine ,Male ,Adolescent ,Chromosomal Proteins, Non-Histone ,Mutation, Missense ,Nose ,medicine.disease_cause ,Choanal Atresia ,Article ,03 medical and health sciences ,Young Adult ,All institutes and research themes of the Radboud University Medical Center ,0302 clinical medicine ,medicine ,Missense mutation ,Facioscapulohumeral muscular dystrophy ,Humans ,Microphthalmos ,In patient ,Muscular dystrophy ,Young adult ,BOSMA ARHINIA MICROPHTHALMIA SYNDROME ,Aged ,Genetics ,Aged, 80 and over ,Mutation ,Base Sequence ,business.industry ,food and beverages ,Middle Aged ,Disorders of movement Donders Center for Medical Neuroscience [Radboudumc 3] ,medicine.disease ,Phenotype ,Muscular Dystrophy, Facioscapulohumeral ,Pedigree ,030104 developmental biology ,Female ,Neurology (clinical) ,business ,030217 neurology & neurosurgery - Abstract
ObjectiveTo determine whether congenital arhinia/Bosma arhinia microphthalmia syndrome (BAMS) and facioscapulohumeral muscular dystrophy type 2 (FSHD2), 2 seemingly unrelated disorders both caused by heterozygous pathogenic missense variants in the SMCHD1 gene, might represent different ends of a broad single phenotypic spectrum associated with SMCHD1 dysfunction.MethodsWe examined and/or interviewed 14 patients with FSHD2 and 4 unaffected family members with N-terminal SMCHD1 pathogenic missense variants to identify BAMS subphenotypes.ResultsNone of the patients with FSHD2 or family members demonstrated any congenital defects or dysmorphic features commonly found in patients with BAMS. One patient became anosmic after nasal surgery and one patient was hyposmic; one man was infertile (unknown cause) but reported normal pubertal development.ConclusionThese data suggest that arhinia/BAMS and FSHD2 do not represent one phenotypic spectrum and that SMCHD1 pathogenic variants by themselves are insufficient to cause either of the 2 disorders. More likely, both arhinia/BAMS and FSHD2 are caused by complex oligogenic or multifactorial mechanisms that only partially overlap at the level of SMCHD1.
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- 2018
30. Corrigendum to 'A homozygous DPM3 mutation in a patient with alpha-dystroglycan-related limb girdle muscular dystrophy' [Neuromuscular disorders 27/11 (2017) 1043-1046]
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L. Phillips, Daniel G. MacArthur, Dirk Lefeber, P. Van den Bergh, Ana Töpf, Ron A. Wevers, Katherine Johnson, Yves Sznajer, L. Xu, Monkol Lek, Volker Straub, W. van Tol, V. Van Parys, UCL - SSS/IONS - Institute of NeuroScience, UCL - SSS/IONS/NEUR - Clinical Neuroscience, UCL - SSS/IREC/SLUC - Pôle St.-Luc, UCL - (SLuc) Centre de génétique médicale UCL, and UCL - (SLuc) Service de neurologie
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Pathology ,medicine.medical_specialty ,Neurology ,business.industry ,Alpha-Dystroglycan ,Pediatrics, Perinatology and Child Health ,Mutation (genetic algorithm) ,medicine ,Neurology (clinical) ,business ,medicine.disease ,Genetics (clinical) ,Limb-girdle muscular dystrophy - Abstract
The authors regret that in the Abstract and in the Molecular Analysis paragraphs of the above paper, the following was incorrect: “a homozygous c.131T > G (p.Leu44Pro) substitution”. This should read “a homozygous c.131T > C (p.Leu44Pro) substitution”. The authors would like to apologise for any inconvenience caused. They would like to thank Sally Heywood, Research Assistant, Human Gene Mutation Database, Institute of Medical Genetics, Cardiff University for bringing this error to their attention.
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- 2018
31. Detection of variants in dystroglycanopathy-associated genes through the application of targeted whole-exome sequencing analysis to a large cohort of patients with unexplained limb-girdle muscle weakness
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Shirin Jamal-Omidi, L. Phillips, Anna Kostera-Pruszczyk, Nanna Witting, Miren Zulaica Ijurco, Maja von der Hagen, Ana Töpf, Kristl G. Claeys, Jaume Colomer, Monkol Lek, Shahriar Nafissi, L. Xu, Daniel G. MacArthur, Elise Valkanas, Jonathan Baets, Anna Potulska-Chromik, Volker Straub, Anna Łusakowska, Peter Van den Bergh, Sonja Strang-Karlsson, Thomas E. Mullen, John Vissing, Marta Bertoli, Juan Bautista Espinal Valencia, Carina Wallgren-Pettersson, Willem De Ridder, Hacer Durmus, Tracey Willis, Katherine Johnson, Andreas Hahn, Roberto Fernández-Torrón, Nicolas Deconinck, UCL - (SLuc) Service de neurologie, UCL - SSS/IONS/NEUR - Clinical Neuroscience, Medicum, Department of Medical and Clinical Genetics, University of Helsinki, Clinicum, Children's Hospital, and HUS Children and Adolescents
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0301 basic medicine ,Male ,lcsh:Diseases of the musculoskeletal system ,Glycosylation ,Whole Exome Sequencing/methods ,Muscle Proteins ,Hygiène et médecine sportives ,Bioinformatics ,WALKER-WARBURG-SYNDROME ,0302 clinical medicine ,Orthopedics and Sports Medicine ,Limb-girdle muscle weakness ,Child ,Dystroglycans ,Exome sequencing ,Muscle Proteins/genetics ,Aged, 80 and over ,Homozygote ,Middle Aged ,Dystroglycanopathies ,3. Good health ,Whole-exome sequencing ,medicine.anatomical_structure ,Phenotype ,Dystroglycans/metabolism ,Child, Preschool ,Orthopédie ,Congenital muscular dystrophy ,SKELETAL-MUSCLE ,Female ,medicine.symptom ,GLYCOPROTEIN COMPLEX ,Life Sciences & Biomedicine ,ALPHA-DYSTROGLYCAN ,Adult ,Heterozygote ,Proximal muscle weakness ,Adolescent ,EYE-BRAIN DISEASE ,03 medical and health sciences ,Young Adult ,Glycoprotein complex ,Exome Sequencing ,medicine ,Humans ,ABNORMAL GLYCOSYLATION ,Genetic Predisposition to Disease ,Walker–Warburg syndrome ,Biology ,Molecular Biology ,POMT2 MUTATIONS ,Aged ,Science & Technology ,Genetic heterogeneity ,business.industry ,Research ,Muscular Dystrophies, Limb-Girdle/genetics ,Muscle weakness ,Skeletal muscle ,Genetic Variation ,Cell Biology ,medicine.disease ,Cancérologie ,030104 developmental biology ,Muscular Dystrophies, Limb-Girdle ,Mutation ,CONGENITAL MUSCULAR-DYSTROPHY ,1182 Biochemistry, cell and molecular biology ,Biologie cellulaire ,Human medicine ,DEFECTIVE GLYCOSYLATION ,3111 Biomedicine ,lcsh:RC925-935 ,business ,030217 neurology & neurosurgery ,MENTAL-RETARDATION - Abstract
Background: Dystroglycanopathies are a clinically and genetically heterogeneous group of disorders that are typically characterised by limb-girdle muscle weakness. Mutations in 18 different genes have been associated with dystroglycanopathies, the encoded proteins of which typically modulate the binding of α-dystroglycan to extracellular matrix ligands by altering its glycosylation. This results in a disruption of the structural integrity of the myocyte, ultimately leading to muscle degeneration. Methods: Deep phenotypic information was gathered using the PhenoTips online software for 1001 patients with unexplained limb-girdle muscle weakness from 43 different centres across 21 European and Middle Eastern countries. Whole-exome sequencing with at least 250ng DNA was completed using an Illumina exome capture and a 38Mb baited target. Genes known to be associated with dystroglycanopathies were analysed for disease-causing variants. Results: Suspected pathogenic variants were detected in DPM3, ISPD, POMT1 and FKTN in one patient each, in POMK in two patients, in GMPPB in three patients, in FKRP in eight patients and in POMT2 in ten patients. This indicated a frequency of 2.7% for the disease group within the cohort of 1001 patients with unexplained limb-girdle muscle weakness. The phenotypes of the 27 patients were highly variable, yet with a fundamental presentation of proximal muscle weakness and elevated serum creatine kinase. Conclusions: Overall, we have identified 27 patients with suspected pathogenic variants in dystroglycanopathy-associated genes. We present evidence for the genetic and phenotypic diversity of the dystroglycanopathies as a disease group, while also highlighting the advantage of incorporating next-generation sequencing into the diagnostic pathway of rare diseases., SCOPUS: ar.j, info:eu-repo/semantics/published
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32. Recreational nitrous oxide-associated neurotoxicity
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William Huynh, Katherine Johnson, Philopatir Mikhail, Annmarie Bosco, and Myong Gyu Kim
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Neural Conduction ,Nitrous Oxide ,03 medical and health sciences ,Young Adult ,0302 clinical medicine ,Sensory ataxia ,Maculopapular rash ,Medicine ,Humans ,030212 general & internal medicine ,Proprioception ,business.industry ,Vitamin B 12 Deficiency ,Spinal cord ,Trunk ,Hyperintensity ,Psychiatry and Mental health ,Vitamin B 12 ,medicine.anatomical_structure ,Treatment Outcome ,Spinal Cord ,Anesthesia ,Gait Ataxia ,Subacute Combined Degeneration ,Surgery ,Female ,Neurotoxicity Syndromes ,Neurology (clinical) ,medicine.symptom ,business ,030217 neurology & neurosurgery - Abstract
A previously healthy 21-year-old woman presented with subacute onset of confusion and gait ataxia. She reported habitual inhalation of nitrous oxide (N2O) purchased online over the past year, with increased consumption over the preceding weeks of up to 300 canisters/week. Examination revealed pale skin with diffuse hyperpigmented macular patches over the trunk (figure 1) and atrophic glossitis. Cognitive impairment was evident with impaired insight, orientation, short-term memory and attention. She had impaired limb proprioception with sensory ataxia and positive Romberg’s test. Distal limb power was significantly reduced with milder weakness proximally and globally depressed reflexes. Figure 1 (A) Hyperpigmented maculopapular rash distributed diffusely over the back and neck. (B) Sagittal and (C) axial T2-weighted images demonstrating hyperintensity in the cervical cord region with an ‘inverted V sign’ classical of subacute combined degeneration of the spinal cord. Laboratory testing demonstrated low …
- Published
- 2017
33. Therapeutic Potential of Shark Anti-ICOSL VNAR Domains is Exemplified in a Murine Model of Autoimmune Non-Infectious Uveitis
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Marina Kovaleva, Katherine Johnson, John Steven, Caroline J. Barelle, and Andrew Porter
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lcsh:Immunologic diseases. Allergy ,0301 basic medicine ,Phage display ,T cell ,Immunology ,Clone (cell biology) ,medicine.disease_cause ,single chain binding domain ,shark ,Autoimmunity ,03 medical and health sciences ,0302 clinical medicine ,Antigen ,In vivo ,Cyclosporin a ,medicine ,Immunology and Allergy ,Original Research ,business.industry ,biologic therapeutics ,autoimmunity ,030104 developmental biology ,medicine.anatomical_structure ,uveitis ,variable domain of shark new antigen receptor ,phage display ,lcsh:RC581-607 ,business ,030215 immunology ,Binding domain - Abstract
Induced co-stimulatory ligand (ICOSL) plays an important role in the activation of T cells through its interaction with the inducible co-stimulator, ICOS. Suppression of full T cell activation can be achieved by blocking this interaction and has been shown to be an effective means of ameliorating disease in models of autoimmunity and inflammation. In this study, we demonstrated the ability of a novel class of anti-ICOSL antigen-binding single domains derived from sharks (VNARs) to effectively reduce inflammation in a murine model of non-infectious uveitis. In initial selections, specific VNARs that recognised human ICOSL were isolated from an immunised nurse shark phage display library and lead domains were identified following their performance in a series of antigen selectivity and in vitro bio-assay screens. High potency in cell-based blocking assays suggested their potential as novel binders suitable for further therapeutic development. To test this hypothesis, surrogate anti-mouse ICOSL VNAR domains were isolated from the same phage display library and the lead VNAR clone selected via screening in binding and ICOS/ICOSL blocking experiments. The VNAR domain with the highest potency in cell-based blocking assays of ICOS/ICOSL interaction was fused to the Fc portion of human IgG1 and was tested in vivo in a mouse model of interphotoreceptor retinoid-binding protein (IRBP)-induced uveitis. The anti-mICOSL VNAR Fc, injected systemically, resulted in a marked reduction of inflammation in treated mice when compared with untreated control animals. This approach inhibited disease progression to an equivalent extent to that seen for the positive corticosteroid control, Cyclosporin A, reducing both clinical and histopathological scores. These results represent the first demonstration of efficacy of a VNAR binding domain in a relevant clinical model of disease and highlight the potential of VNAR for the treatment of auto-inflammatory conditions.
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- 2017
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34. A homozygous DPM3 mutation in a patient with alpha-dystroglycan-related limb girdle muscular dystrophy
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Ron A. Wevers, Ana Töpf, W. van Tol, Dirk Lefeber, Volker Straub, L. Phillips, V. Van Parys, L. Xu, Katherine Johnson, Daniel G. MacArthur, Yves Sznajer, P. Van den Bergh, Monkol Lek, UCL - SSS/IONS/NEUR - Clinical Neuroscience, UCL - (SLuc) Service de neurologie, UCL - SSS/IREC/SLUC - Pôle St.-Luc, and UCL - (SLuc) Centre de génétique médicale UCL
- Subjects
0301 basic medicine ,Pathology ,medicine.medical_specialty ,Cardiomyopathy ,medicine.disease_cause ,Dolichol-P-mannose synthase ,Mannosyltransferases ,03 medical and health sciences ,Limb girdle muscular dystrophy ,All institutes and research themes of the Radboud University Medical Center ,0302 clinical medicine ,Medicine ,Humans ,Disorders of movement Radboud Institute for Molecular Life Sciences [Radboudumc 3] ,Dystroglycans ,Muscle, Skeletal ,Wasting ,Genetics (clinical) ,Exome sequencing ,Mutation ,business.industry ,Homozygote ,Skeletal muscle ,Membrane Proteins ,DPM3 ,Anatomy ,Middle Aged ,Disorders of movement Donders Center for Medical Neuroscience [Radboudumc 3] ,medicine.disease ,Phenotype ,030104 developmental biology ,medicine.anatomical_structure ,Neurology ,Muscular Dystrophies, Limb-Girdle ,Pediatrics, Perinatology and Child Health ,Congenital muscular dystrophy ,Female ,Neurology (clinical) ,medicine.symptom ,business ,030217 neurology & neurosurgery ,Alpha-dystroglycan ,Limb-girdle muscular dystrophy - Abstract
Defects of O-linked glycosylation of alpha-dystroglycan cause a wide spectrum of muscular dystrophies ranging from severe congenital muscular dystrophy associated with abnormal brain and eye development to mild limb girdle muscular dystrophy. We report a female patient who developed isolated pelvic girdle muscle weakness and wasting, which became symptomatic at age 42. Exome sequencing uncovered a homozygous c.131T > G (p.Leu44Pro) substitution in DPM3, encoding dolichol-P-mannose (DPM) synthase subunit 3, leading to a 50% reduction of enzymatic activity. Decreased availability of DPM as an essential donor substrate for protein O-mannosyltransferase (POMT) 1 and 2 explains defective skeletal muscle alpha-dystroglycan O-glycosylation. Our findings show that DPM3 mutations may lead to an isolated and mild limb girdle muscular dystrophy phenotype without cardiomyopathy.
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- 2017
35. A novel recessive TTN founder variant is a common cause of distal myopathy in the Serbian population
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Miloš Brkušanin, L. Phillips, Straub, Ana Töpf, Vidosava Rakocevic Stojanovic, Daniel G. MacArthur, M. Cassop-Thompson, Dusanka Savic-Pavicevic, Hanns Lochmüller, JN Glumac, Katherine Johnson, L. Xu, Vedrana Milic Rasic, Stojan Peric, S Milenkovic, Marta Bertoli, Ruzica Maksimovic, Monkol Lek, and Bojan Banko
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0301 basic medicine ,Adult ,Male ,Adolescent ,Population ,Mutation, Missense ,Genes, Recessive ,Biology ,Compound heterozygosity ,Article ,Muscular Dystrophies ,Frameshift mutation ,03 medical and health sciences ,0302 clinical medicine ,Gene Frequency ,Genetics ,medicine ,Missense mutation ,Humans ,Connectin ,Myopathy ,education ,Child ,Creatine Kinase ,Genetics (clinical) ,education.field_of_study ,Haplotype ,Syndrome ,Middle Aged ,Founder Effect ,3. Good health ,Distal Myopathies ,030104 developmental biology ,Phenotype ,Haplotypes ,Case-Control Studies ,biology.protein ,Titin ,Female ,medicine.symptom ,Serbia ,030217 neurology & neurosurgery - Abstract
Variants in the TTN gene have been associated with distal myopathies and other distinctive phenotypes involving skeletal and cardiac muscle. Through whole-exome sequencing we identified a novel stop-gain variant (c.107635C>T, p.(Gln35879Ter)) in the TTN gene, coding a part of the M-line of titin, in 14 patients with autosomal recessive distal myopathy and Serbian ancestry. All patients share a common 1 Mb core haplotype associated with c.107635C>T, suggesting a founder variant. In compound heterozygotes, nine other TTN variants were identified: four stop-gain, three frameshift, one missense and one splice donor variant. Patients homozygous for the common variant did not show significant clinical differences to the compound heterozygous patients. The clinical presentation of all patients was an adult onset distal myopathy with predominant lower limb involvement. In addition, most patients had normal to mildly elevated serum creatine kinase levels, myopathic electromyograms, normal cardiologic and respiratory tests and muscle pathology consistent with a dystrophic process. In this study, we describe a distinct phenotype for patients with distal myopathy associated with novel recessive TTN variants including a Serbian founder variant. Our results expand the phenotypic and genetic spectrum of titinopathies and will facilitate the diagnosis of this condition in patients of Serbian origin.
- Published
- 2017
36. LGMD AUTOSOMAL RESSESSIVE AND DOMINANT
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Maud Beuvin, Sofie Symoens, P. De Jonghe, Anne Boland, B. De Paepe, Ana Töpf, Jean-François Deleuze, Thomas Brand, Ralf Schindler, J. De Bleecker, Katherine Johnson, Jonathan Baets, W. De Ridder, Bruno Eymard, Bob Asselbergh, Isabelle Nelson, V. Straub, Gisèle Bonne, R. Ben Yaou, and Thierry Maisonobe
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0301 basic medicine ,medicine.medical_specialty ,Neurology ,business.industry ,medicine.disease ,Child health ,Clinical neurology ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,030220 oncology & carcinogenesis ,Internal medicine ,Pediatrics, Perinatology and Child Health ,Cardiac conduction ,medicine ,Cardiology ,Medical genetics ,Neurology (clinical) ,business ,Genetics (clinical) ,Loss function ,Limb-girdle muscular dystrophy - Published
- 2018
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37. Developmental Disorders of the Brain
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Dan Lubman, Katherine Johnson, Janette Tong, Jodie Naim-Feil, Valsamma Eapen, Jane McGillivray, Nicole Papadopoulos, Julie Stout, Tamara May, Mark Bellgrove, Darren Hocking, Jarrad Lum, Emma Sciberras, Peter Enticott, Shalini Arunogiri, Matthew Hughes, and Melissa Kirkovski
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business.industry ,Medicine ,business - Published
- 2016
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38. Antimicrobial Stewardship and Infection Control Practices Reduced Cost and Healthcare Facility-Onset Clostridium difficile Infection (HO-CDI) in a Long-Term Acute Care (LTAC) Setting
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James Turley, Katherine Johnson, and Maureen Bunch
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medicine.medical_specialty ,Epidemiology ,business.industry ,Health Policy ,Public Health, Environmental and Occupational Health ,Clostridium difficile ,Infectious Diseases ,Acute care ,Health care ,medicine ,Infection control ,Antimicrobial stewardship ,Intensive care medicine ,business - Published
- 2017
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39. An international collaboration applying targeted whole exome sequencing to detect causative variants in 1001 patients affected by limb-girdle weakness of unknown origin
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Monkol Lek, M. Ensini, Marta Bertoli, L. Phillips, Thomas E. Mullen, L. Xu, Daniel G. MacArthur, A. Blain, V. Straub, Ana Töpf, Katherine Johnson, and Elise Valkanas
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Limb girdle weakness ,Neurology ,business.industry ,Pediatrics, Perinatology and Child Health ,Medicine ,Neurology (clinical) ,business ,Bioinformatics ,Genetics (clinical) ,Exome sequencing - Published
- 2018
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40. OASIS-C, Depression Screening, and M1730
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Verna Benner Carson and Katherine Johnson Vanderhorst
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medicine.medical_specialty ,Health (social science) ,MEDLINE ,Standardized test ,Outcome assessment ,Medicare ,Outcome Assessment, Health Care ,Humans ,Mass Screening ,Medicine ,Geriatric Assessment ,Nursing Assessment ,Aged ,Psychiatric Status Rating Scales ,Advanced and Specialized Nursing ,Community and Home Care ,Depression ,business.industry ,Geriatric assessment ,General Medicine ,Community Health Nursing ,Depression screening ,Home Care Services ,United States ,Family medicine ,Needs assessment ,Psychiatric status rating scales ,business ,Value (mathematics) ,Needs Assessment - Published
- 2010
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41. Vision-Related Quality of Life in Patients with Complete Homonymous Hemianopia Post Stroke
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Maria Crotty, Annette Thompson, Andrew Lee, Robyn Vincent, Celia S. Chen, Andrew Daly, Stacey George, Lidia Centrella, Allison Hayes, Gayle Elizabeth Clarke, and Katherine Johnson
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Male ,medicine.medical_specialty ,genetic structures ,medicine.medical_treatment ,Logistic regression ,Cohort Studies ,Physical medicine and rehabilitation ,Quality of life ,Surveys and Questionnaires ,medicine ,Humans ,Social Behavior ,Prospective cohort study ,Veterans Affairs ,Vision, Ocular ,Aged ,Aged, 80 and over ,Community and Home Care ,Rehabilitation ,Middle Aged ,Mental health ,eye diseases ,Stroke ,Ophthalmology ,Case-Control Studies ,Peripheral vision ,Quality of Life ,Physical therapy ,Hemianopsia ,Female ,Independent Living ,Neurology (clinical) ,Visual Fields ,Psychology ,Color Perception ,Cohort study - Abstract
The aim is to determine the characteristics of vision-specific quality of life restriction using the National Eye Institute Visual Function Questionnaire (NEI VFQ-25) and Veterans Affairs Low Vision Visual Function Questionnaire (VA LV VFQ-48) in patients with complete homonymous hemianopia (HH) post stroke.Prospective cohort study of patients with complete HH compared to age- and gender-matched subjects with normal visual fields.In the NEI VFQ-25, scores on five subscales were significantly reduced after multiple logistic regression accounting for vision and comorbidities. The five subscales are vision-specific social functioning, vision-specific mental health, vision-specific dependency, driving, and peripheral vision. In the VA LV VFQ-48 postregression analysis, mobility is the only domain that is significantly affected in the people with HH.Identification of the significant areas of visual difficulties and their effects on quality of life is important as it can help better address the patients' rehabilitation needs. The current study identifies the need for orientation and mobility training as well as independent living rehabilitation in patients with HH to help address the difficulties in their vision-specific quality of life and maximize their residual vision.
- Published
- 2009
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42. Finding the Right Fit
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Renee Walsh, Katherine Johnson, Suzanne Trotta, Ann Noll, and Sandra J. Driscoll
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Advanced and Specialized Nursing ,medicine.medical_specialty ,Education, Continuing ,business.industry ,MEDLINE ,Nursing Staff, Hospital ,Graduate nurses ,Project team ,Community hospital ,Unit (housing) ,Orthopedics ,Nursing ,Orientation (mental) ,Orthopedic surgery ,medicine ,Humans ,Orthopedics and Sports Medicine ,Curriculum ,business ,Hospital Units - Abstract
At most small community hospitals, orthopaedic patients are cared for on general medical-surgical units rather than on dedicated orthopaedic units. The mixed patient population of a typical medical-surgical unit limits the amount of exposure a new graduate nurse has to care for orthopaedic patients during the unit-based orientation. In 2006, a 20-bed medical-surgical unit at a community hospital in the northeast was expecting to orient eight new graduate nurses over the course of the year. The project team recognized a need to enhance the orthopaedic portion of the unit-based orientation to prepare the graduate nurses to provide "knowledgeable and safe care" (P. ) to orthopaedic patients. This article describes the development, implementation, and evaluation of a standardized, evidence-based orthopaedic curriculum piloted in 2006. The project increased the orthopaedic competency of the preceptors, provided the new graduate nurses with a standardized introduction to orthopaedic patient care, and had an unintended benefit of improving overall staff orthopaedic knowledge that improved the consistency and quality of care for orthopaedic patients at this community hospital.
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- 2009
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43. Melanoma Gene Expression Markers for Surveillance of Epidermolysis Bullosa Nevi Malignant Transformation
- Author
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Ji Won Ahn, Tor Shwayder, Laurie L. Kohen, Katherine Johnson, and Marsha Chaffins
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Genetic Markers ,Pathology ,medicine.medical_specialty ,Skin Neoplasms ,Biopsy ,Dermoscopy ,Dermatology ,Malignant transformation ,Diagnosis, Differential ,030207 dermatology & venereal diseases ,03 medical and health sciences ,Epidermolysis bullosa simplex ,0302 clinical medicine ,medicine ,Nevus ,Humans ,Child ,Melanoma ,Tumor marker ,Cell Proliferation ,Nevus, Pigmented ,business.industry ,Gene Expression Profiling ,medicine.disease ,Gene expression profiling ,Cell Transformation, Neoplastic ,Neoplasm Regression, Spontaneous ,030220 oncology & carcinogenesis ,Child, Preschool ,Epidermolysis Bullosa Simplex ,Female ,Epidermolysis bullosa ,Differential diagnosis ,business ,Follow-Up Studies - Published
- 2016
44. Functional characterisation of the osteoarthritis susceptibility locus at chromosome 6q14.1 marked by the polymorphism rs9350591
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Katherine Johnson, Louise N. Reynard, and John Loughlin
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Molecular Sequence Data ,Locus (genetics) ,Single-nucleotide polymorphism ,Biology ,Polymerase Chain Reaction ,Polymorphism, Single Nucleotide ,White People ,03 medical and health sciences ,0302 clinical medicine ,Osteoarthritis ,Gene expression ,Odds Ratio ,Genetics ,medicine ,Humans ,Genetics(clinical) ,Genetic Predisposition to Disease ,Genetics (clinical) ,030304 developmental biology ,030203 arthritis & rheumatology ,Regulation of gene expression ,0303 health sciences ,Base Sequence ,Gene Expression Profiling ,Cartilage ,Sequence Analysis, DNA ,Chondrogenesis ,Gene expression profiling ,medicine.anatomical_structure ,Gene Expression Regulation ,Expression quantitative trait loci ,Chromosomes, Human, Pair 6 ,Genome-Wide Association Study ,Research Article - Abstract
Background The arcOGEN genome-wide association study reported the rs9350591 C/T single nucleotide polymorphism (SNP) as marking a region on chromosome 6q14.1 that is associated with hip osteoarthritis (OA) in Europeans, with an odds ratio (OR) of 1.18 and a p-value of 2.42 × 10−9. rs9350591 is an intergenic SNP surrounded by seven genes within 1 Mb. Six of the genes are expressed in cartilage. We sought to characterise this signal to assess whether the association of rs9350591 with OA is mediated by modulating gene expression. Methods Total RNA was extracted from hip or knee cartilage of 161 OA patients and from hip cartilage of 29 non-OA patients who had undergone hip replacements as a result of neck-of-femur (NOF) fractures. We used quantitative PCR (qPCR) to measure overall gene expression, and pyrosequencing to assess allelic expression of the genes. A mesenchymal stem cell (MSC) differentiation model was used to assess gene expression during chondrogenesis. Results We identified a significant decrease in the expression of SENP6 (p = 0.005) and MYO6 (p = 0.026) in OA hip cartilage relative to the non-OA hip control cartilage. However, we found no evidence for a correlation between gene expression and rs9350591 genotype for any of the six genes. In addition, we identified expression quantitative trait loci (eQTLs) operating on COL12A1, TMEM30A, SENP6 and MYO6, although these were not relevant to the OA associated signal. Finally, all genes were dynamically expressed during chondrogenesis. Conclusions The regulation of gene expression at this locus is complex, highlighted by the down-regulation of SENP6 and MYO6 in OA hip cartilage and by eQTLs operating on four of the genes at the locus. However, modulation of gene expression in the end-stage OA cartilage that we have investigated is not the mechanism by which this association signal is operating. As implied by the dynamic patterns of gene expression throughout chondrogenesis, the association signal marked by rs9350591 could instead be exerting its effects during joint development. Electronic supplementary material The online version of this article (doi:10.1186/s12881-015-0215-9) contains supplementary material, which is available to authorized users.
- Published
- 2015
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45. Rates and predictors of mental illness in gay men, lesbians and bisexual men and women
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Clive Cort, Michael King, James Warner, Katherine Johnson, Angus Ramsay, Mark Griffin, and Eamonn McKeown
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Adult ,Male ,medicine.medical_specialty ,Alcohol Drinking ,Substance-Related Disorders ,Cross-sectional study ,media_common.quotation_subject ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Humans ,030212 general & internal medicine ,Homosexuality ,Homosexuality, Male ,Psychiatry ,media_common ,Wales ,Suicide attempt ,Mental Disorders ,Homosexuality, Female ,Social environment ,Mental illness ,medicine.disease ,Mental health ,030227 psychiatry ,Psychiatry and Mental health ,Mental Health ,England ,Psychological well-being ,Bisexuality ,Female ,Quality-Adjusted Life Years ,Lesbian ,Psychology ,Prejudice - Abstract
BackgroundThere is a dearth of research into the mental health of gay men, lesbians and bisexual men and women in the UK.AimsTo assess rates and possible predictors of mental illness in these groups.MethodA comprehensive assessment was made of the psychological and social well-being of a sample of gay men, lesbians and bisexual men and women, identified using ‘snowball’ sampling.ResultsOf the 1285 gay, lesbian and bisexual respondents who took part, 556 (43%) had mental disorder as defined by the revised Clinical Interview Schedule (CIS – R). Out of the whole sample, 361 (31%) had attempted suicide. This was associated with markers of discrimination such as recent physical attack (OR=l.7, 95% CI 1.3–2.3) and school bullying (OR=l.4, 95% CI 1.1–2.0), but not with higher scores on the CIS-R.ConclusionsGay, lesbian and bisexual men and women have high levels of mental disorder, possibly linked with discrimination.
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- 2004
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46. A recessive TTN founder mutation causes a distal myopathy phenotype in a Serbian cohort
- Author
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M. Bertoli, M. Cassop-Thompson, Katherine Johnson, J. Nikodinovic Glumac, L. Phillips, Ana Töpf, Volker Straub, Daniel G. MacArthur, Stojan Peric, and V. Rakocevic Stojanovic
- Subjects
Genetics ,Biology ,Phenotype ,language.human_language ,Neurology ,Pediatrics, Perinatology and Child Health ,Cohort ,language ,medicine ,Neurology (clinical) ,medicine.symptom ,Serbian ,Myopathy ,Founder mutation ,Genetics (clinical) - Published
- 2016
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47. Application of exome sequencing technologies: A case study of patients with unexplained limb-girdle muscle weakness harbouring GAA mutations
- Author
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Paul Maddison, Anna Łusakowska, M. Bertoli, Andreas Hahn, Volker Straub, Kristl G. Claeys, John Vissing, L. Xu, V. Rakocevic Stojanovic, Stojan Peric, Katherine Johnson, Monkol Lek, Ela Akay, Alexandra Bastian, L. Phillips, Daniel G. MacArthur, and Ana Töpf
- Subjects
0303 health sciences ,business.industry ,Bioinformatics ,03 medical and health sciences ,0302 clinical medicine ,Neurology ,Pediatrics, Perinatology and Child Health ,Medicine ,Neurology (clinical) ,LIMB GIRDLE MUSCLE WEAKNESS ,business ,030217 neurology & neurosurgery ,Genetics (clinical) ,Exome sequencing ,030304 developmental biology - Published
- 2016
- Full Text
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48. Mental health and quality of life of gay men and lesbians in England and Wales
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Angus Ramsay, Oliver Davidson, Michael King, James Warner, Eamonn McKeown, Clive Cort, Robert Blizard, Katherine Johnson, and Lucie Wright
- Subjects
Adult ,Male ,050103 clinical psychology ,medicine.medical_specialty ,Adolescent ,Alcohol Drinking ,Substance-Related Disorders ,media_common.quotation_subject ,Victimisation ,03 medical and health sciences ,0302 clinical medicine ,Quality of life (healthcare) ,Risk Factors ,Surveys and Questionnaires ,medicine ,Humans ,0501 psychology and cognitive sciences ,Homosexuality ,Homosexuality, Male ,Social Behavior ,Psychiatry ,Life Style ,reproductive and urinary physiology ,Aged ,media_common ,Psychiatric Status Rating Scales ,Wales ,Public health ,05 social sciences ,Homosexuality, Female ,Middle Aged ,Patient Acceptance of Health Care ,Mental health ,Help-seeking ,030227 psychiatry ,Psychiatry and Mental health ,Intimidation ,Cross-Sectional Studies ,Mental Health ,England ,Heterosexuality ,Quality of Life ,behavior and behavior mechanisms ,Female ,Psychology ,Self-Injurious Behavior ,Prejudice ,Stress, Psychological - Abstract
BackgroundLittle is known about the mental health of gay men and lesbians living in Europe.AimsTo compare psychological status, quality of life and use of mental health services by lesbians and gay men with heterosexual people.MethodCross-sectional study in England and Wales using ‘snowball’ sampling.ResultsParticipants: 656 gay men, 505 heterosexual men, 430 lesbians and 588 heterosexual women. Gay men were more likely than heterosexual men to score above threshold on the Clinical Interview Schedule, indicating greater levels of psychological distress (RR 1.24, 95% Cl 1.07–1.43), as were lesbians compared with heterosexual women (RR 1.30, 95% Cl 1.11-1.52). Gay men and lesbians were more likely than heterosexuals to have consulted a mental health professional in the past, deliberately harmed themselves and used recreational drugs. Lesbians were more likely to have experienced verbal and physical intimidation and to consume more alcohol than heterosexual women.ConclusionsAwareness of mental health issues for gay men and lesbians should become a standard part of training for mental health professionals, who need to be aware of the potential for substance misuse and self-harm in this group and of the discrimination experienced by many lesbians.
- Published
- 2003
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49. There Is No Such Thing As a 'Little Dementia'!
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Verna Benner Carson, Harold G. Koenig, and Katherine Johnson Vanderhorst
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medicine.medical_specialty ,Parkinson's disease ,Dementia with Lewy bodies ,business.industry ,media_common.quotation_subject ,Hippocampus ,medicine.disease ,humanities ,Denial ,Frontal lobe ,mental disorders ,medicine ,Dementia ,Psychiatry ,Occipital lobe ,Vascular dementia ,business ,media_common - Abstract
Families frequently report that they have received the diagnosis of “a little dementia” for a loved one whose memory is impaired. There is no such thing as “a little dementia.” It is like being a “little pregnant”—either you have it or you do not! And having “dementia” is never a good thing—although families who receive that diagnosis will frequently say, “Well at least it is not Alzheimer’s!” This denial keeps them from learning about the disease, planning for a time when the loved one with the diagnosis is unable to survive without 24-h care, and making other decisions that are best made before a situation becomes a crisis.
- Published
- 2015
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50. Help! My Mother Is Lost and I Cannot Find Her!
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Verna Benner Carson, Harold G. Koenig, and Katherine Johnson Vanderhorst
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business.industry ,fungi ,medicine ,Parietal lobe ,Hippocampus ,Brain damage ,Disease ,medicine.symptom ,business ,Association (psychology) ,Neuroscience - Abstract
Wandering is a common behavior that occurs in Alzheimer’s disease (AD)—the Alzheimer’s Association estimates that over half of all those with the disease will wander at one time or another and if the wanderer is not found within 24 h, up to half of individuals who wander will suffer serious injury or death. Wandering results from brain damage in the areas of the parietal lobe as well as the hippocampus. Wandering involves the need to “keep on the move”.
- Published
- 2015
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