66 results on '"Simranjeet Kaur"'
Search Results
2. The emerging role of lncRNAs in inflammatory bowel disease
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Reza Yarani, Aashiq H. Mirza, Simranjeet Kaur, and Flemming Pociot
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Medicine ,Biochemistry ,QD415-436 - Abstract
Inflammatory bowel disease: The role of noncoding RNA Studying long noncoding RNAs (lncRNAs) may improve diagnosis and treatment of inflammatory bowel disease (IBD). These RNAs are found between genes in DNA regions previously thought to be “junk,” and have recently been shown to be important in development of various diseases. IBD, which includes both Crohn’s disease and ulcerative colitis, damages the digestive tract lining, causing pain and chronic diarrhea. A better understanding of IBD’s complex causes is needed to identify more effective treatments. Flemming Pociot at the Steno Diabetes Center in Gentofte, Denmark, and co-workers reviewed recent research linking lncRNAs and IBD. They discuss how lncRNAs’ roles in immunity and inflammation influence IBD development, describing how particular lncRNAs are related to IBD. Promising avenues for further research are highlighted, including the use of lncRNAs as biomarkers of IBD, which can be difficult to diagnose.
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- 2018
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3. Long non-coding RNAs as novel players in β cell function and type 1 diabetes
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Aashiq H. Mirza, Simranjeet Kaur, and Flemming Pociot
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Long non-coding RNAs ,Type 1 diabetes ,Enhancers ,Regulatory elements ,3D genome architecture ,Medicine ,Genetics ,QH426-470 - Abstract
Abstract Background Long non-coding RNAs (lncRNAs) are a sub-class within non-coding RNA repertoire that have emerged as crucial regulators of the gene expression in various pathophysiological conditions. lncRNAs display remarkable versatility and wield their functions through interactions with RNA, DNA, or proteins. Accumulating body of evidence based on multitude studies has highlighted the role of lncRNAs in many autoimmune and inflammatory diseases, including type 1 diabetes (T1D). Main body of abstract This review highlights emerging roles of lncRNAs in immune and islet β cell function as well as some of the challenges and opportunities in understanding the pathogenesis of T1D and its complications. Conclusion We accentuate that the lncRNAs within T1D-loci regions in consort with regulatory variants and enhancer clusters orchestrate the chromatin remodeling in β cells and thereby act as cis/trans-regulatory determinants of islet cell transcriptional programs.
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- 2017
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4. MicroRNAs and histone deacetylase inhibition-mediated protection against inflammatory β-cell damage.
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Anna Lindeløv Vestergaard, Claus Heiner Bang-Berthelsen, Tina Fløyel, Jonathan Lucien Stahl, Lisa Christen, Farzaneh Taheri Sotudeh, Peter de Hemmer Horskjær, Klaus Stensgaard Frederiksen, Frida Greek Kofod, Christine Bruun, Lukas Adrian Berchtold, Joachim Størling, Romano Regazzi, Simranjeet Kaur, Flemming Pociot, and Thomas Mandrup-Poulsen
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Medicine ,Science - Abstract
Inflammatory β-cell failure contributes to type 1 and type 2 diabetes pathogenesis. Pro-inflammatory cytokines cause β-cell dysfunction and apoptosis, and lysine deacetylase inhibitors (KDACi) prevent β-cell failure in vitro and in vivo, in part by reducing NF-κB transcriptional activity. We investigated the hypothesis that the protective effect of KDACi involves transcriptional regulation of microRNAs (miRs), potential new targets in diabetes treatment. Insulin-producing INS1 cells were cultured with or without the broad-spectrum KDACi Givinostat, prior to exposure to the pro-inflammatory cytokines IL-1β and IFN-γ for 6 h or 24 h, and miR expression was profiled with miR array. Thirteen miRs (miR-7a-2-3p, miR-29c-3p, miR-96-5p, miR-101a-3p, miR-140-5p, miR-146a-5p, miR-146b-5p, miR-340-5p, miR-384-5p, miR-455-5p, miR-466b-2-3p, miR-652-5p, and miR-3584-5p) were regulated by both cytokines and Givinostat, and nine were examined by qRT-PCR. miR-146a-5p was strongly regulated by cytokines and KDACi and was analyzed further. miR-146a-5p expression was induced by cytokines in rat and human islets. Cytokine-induced miR-146a-5p expression was specific for INS1 and β-TC3 cells, whereas α-TC1 cells exhibited a higher basal expression. Transfection of INS1 cells with miR-146a-5p reduced cytokine signaling, including the activity of NF-κB and iNOS promoters, as well as NO production and protein levels of iNOS and its own direct targets TNF receptor associated factor 6 (TRAF6) and interleukin-1 receptor-associated kinase 1 (IRAK1). miR-146a-5p was elevated in the pancreas of diabetes-prone BB-DP rats at diabetes onset, suggesting that miR-146a-5p could play a role in type 1 diabetes development. The miR array of cytokine-exposed INS1 cells rescued by KDACi revealed several other miRs potentially involved in cytokine-induced β-cell apoptosis, demonstrating the strength of this approach.
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- 2018
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5. Basic principles of rehabilitation for lost eye: A dentist′s perspectives
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Varun Baslas, Simranjeet Kaur, Rohit Yadav, Himanshi Aggarwal, Sunit Kumar Jurel, and Pradeep Kumar
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Custom-fit prosthesis ,ocular prosthesis ,shell prosthesis ,Medicine - Abstract
Various maxillofacial prostheses are made from materials used in dentistry. The treatment of the patient who loses one or both eyes is a challenging task for the clinician. A multidisciplinary approach is required to fulfill the needs and expectations of an anophthalmic patient. Dentists are now playing a major role in this regard as they are more familiar with the materials used for artificial eyes. Ocular prosthesis is an artifi cial replacement of the eye. The article describes the overall management and treatment of an anophthalmic patient, followed by a procedure for an easy fabrication of a custom-fi tocular prosthesis.
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- 2015
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6. Effects of GWAS-associated genetic variants on lncRNAs within IBD and T1D candidate loci.
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Aashiq H Mirza, Simranjeet Kaur, Caroline A Brorsson, and Flemming Pociot
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Medicine ,Science - Abstract
Long non-coding RNAs are a new class of non-coding RNAs that are at the crosshairs in many human diseases such as cancers, cardiovascular disorders, inflammatory and autoimmune disease like Inflammatory Bowel Disease (IBD) and Type 1 Diabetes (T1D). Nearly 90% of the phenotype-associated single-nucleotide polymorphisms (SNPs) identified by genome-wide association studies (GWAS) lie outside of the protein coding regions, and map to the non-coding intervals. However, the relationship between phenotype-associated loci and the non-coding regions including the long non-coding RNAs (lncRNAs) is poorly understood. Here, we systemically identified all annotated IBD and T1D loci-associated lncRNAs, and mapped nominally significant GWAS/ImmunoChip SNPs for IBD and T1D within these lncRNAs. Additionally, we identified tissue-specific cis-eQTLs, and strong linkage disequilibrium (LD) signals associated with these SNPs. We explored sequence and structure based attributes of these lncRNAs, and also predicted the structural effects of mapped SNPs within them. We also identified lncRNAs in IBD and T1D that are under recent positive selection. Our analysis identified putative lncRNA secondary structure-disruptive SNPs within and in close proximity (+/-5 kb flanking regions) of IBD and T1D loci-associated candidate genes, suggesting that these RNA conformation-altering polymorphisms might be associated with diseased-phenotype. Disruption of lncRNA secondary structure due to presence of GWAS SNPs provides valuable information that could be potentially useful for future structure-function studies on lncRNAs.
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- 2014
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7. Reporting of delayed adverse donor reactions in whole blood donors: Just the tip of an iceberg!
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Gagandeep Kaur, Kshitija Mittal, Paramjit Kaur, Ravneet Kaur, Tanvi Sood, and Simranjeet Kaur
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medicine.medical_specialty ,Hemovigilance ,business.industry ,Blood Safety ,Incidence ,Incidence (epidemiology) ,Biochemistry (medical) ,Clinical Biochemistry ,Blood Donors ,Transfusion medicine ,Hematology ,Phlebotomy ,Blood donor ,Internal medicine ,medicine ,Humans ,Female ,Prospective Studies ,Whole blood donation ,business ,Body mass index ,Whole blood - Abstract
BACKGROUND AND OBJECTIVES The study was planned to determine the incidence and analyze various epidemiological factors tend to be associated with delayed adverse donor reactions (ADR). MATERIAL AND METHODS The prospective observational study was conducted in Department of Transfusion Medicine of tertiary care hospital from January 2019 to December 2019. Eligible blood donors were observed for any adverse reactions after 15 minutes of removal of phlebotomy needle. Further, telephonic calls were made to each enrolled blood donor on day-2 and day-7 of the whole blood donation. For each day, two calls were made at an interval of 4 hours before declaring the participant to be non-responder. RESULTS A total of 1540 (84.1%) blood donors responded on day-2 and 1610 (87.9%) responded on day-7 of follow-up. Total 180 (11.2%) blood donors experienced delayed ADRs. Two donors (1.1%) experienced on-site while 178 (98.89%) reported off-site delayed ADRs when followed-up telephonically. Commonest delayed ADRs reported were bruise (n=72; 30.9%), arm-pain (n=61; 26.2%) and generalised weakness (n=44; 18.9%). Female donors (27.3% vs. 11.2%; p=0.004), first time donors (15.2 vs. 9.9%; p=0.002), donors with low body-weight (range of 45-60 kg; 15.9% vs. 11.5% vs. 6.1%; p=0.011) and body mass index < 18.5 (24% vs. 12.5% vs. 9.7% vs. 11.3%; p=0.028) experienced more delayed ADRs. CONCLUSION Blood donors do experience delayed ADRs but these are not reported to the blood centers as these are usually mild. However, it is important to capture these delayed adverse donor reactions and report it to National Hemovigilance Program so that strategies can be formulated to prevent their occurrence and recurrence.
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- 2022
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8. MINI REVIEW ON SELECTION OF CHROMATOGRAPHIC TECHNIQUES FOR THERAPEUTIC DRUG MONITORING
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Gourav Kalra and Simranjeet Kaur
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medicine.diagnostic_test ,Therapeutic drug monitoring ,business.industry ,medicine ,Computational biology ,business ,Selection (genetic algorithm) ,Mini review - Published
- 2021
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9. Genetic predisposition in the 2′-5′A pathway in the development of type 1 diabetes: potential contribution to dysregulation of innate antiviral immunity
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Martin Haupt-Jorgensen, Karsten Buschard, Flemming Pociot, Kristina Pedersen, Knut Dahl-Jørgensen, Ivan C. Gerling, Simranjeet Kaur, and Lars Krogvold
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Adult ,Male ,0301 basic medicine ,Ribonuclease L ,Endocrinology, Diabetes and Metabolism ,030209 endocrinology & metabolism ,Single-nucleotide polymorphism ,Disease ,Type 2 diabetes ,Biology ,Interferon α ,RNase L ,Type 1 interferon ,Antiviral Agents ,Polymorphism, Single Nucleotide ,Article ,Virus ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Immune system ,Internal Medicine ,Genetic predisposition ,medicine ,Humans ,Genetic Predisposition to Disease ,RNA, Messenger ,Gene ,Type 1 diabetes ,Oligoribonucleotides ,Adenine Nucleotides ,RNA-Binding Proteins ,medicine.disease ,Immunity, Innate ,Toll-like receptor 7 ,Diabetes Mellitus, Type 1 ,030104 developmental biology ,Gene Expression Regulation ,Virus Diseases ,Immunology ,2′-5′A pathway ,2′-5′ Oligoadenylate synthetase ,Female ,Genome-Wide Association Study - Abstract
Aims/hypothesis The incidence of type 1 diabetes is increasing more rapidly than can be explained by genetic drift. Viruses may play an important role in the disease, as they seem to activate the 2′-5′-linked oligoadenylate (2′-5′A) pathway of the innate antiviral immune system. Our aim was to investigate this possibility. Methods Innate antiviral immune pathways were searched for type 1 diabetes-associated polymorphisms using genome-wide association study data. SNPs within ±250kb flanking regions of the transcription start site of 64 genes were examined. These pathways were also investigated for type 1 diabetes-associated RNA expression profiles using laser-dissected islets from two to five tissue sections per donor from the Diabetes Virus Detection (DiViD) study and the network of Pancreatic Organ Donors (nPOD). Results We found 27 novel SNPs in genes nominally associated with type 1 diabetes. Three of those SNPs were located upstream of the 2′-5′A pathway, namely SNP rs4767000 (p = 1.03 × 10−9, OR 1.123), rs1034687 (p = 2.16 × 10−7, OR 0.869) and rs739744 (p = 1.03 × 10−9, OR 1.123). We also identified a large group of dysregulated islet genes in relation to type 1 diabetes, of which two were novel. The most aberrant genes were a group of IFN-stimulated genes. Of those, the following distinct pathways were targeted by the dysregulation (compared with the non-diabetic control group): OAS1 increased by 111% (p < 1.00 × 10−4, 95% CI −0.43, −0.15); MX1 increased by 142% (p < 1.00 × 10−4, 95% CI −0.52, −0.22); and ISG15 increased by 197% (p = 2.00 × 10−4, 95% CI −0.68, −0.18). Conclusions/interpretation We identified a genetic predisposition in the 2′-5′A pathway that potentially contributes to dysregulation of the innate antiviral immune system in type 1 diabetes. This study describes a potential role for the 2′-5′A pathway and other components of the innate antiviral immune system in beta cell autoimmunity. Graphical abstract
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- 2021
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10. POTENTIAL ADVERSE EFFECTS OF VARIOUS DRUGS USED FOR THE TREATMENT OF ACUTE KIDNEY DISEASE
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Gurkirat Singh and Simranjeet Kaur
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medicine.medical_specialty ,business.industry ,Internal medicine ,Medicine ,business ,medicine.disease ,Adverse effect ,Kidney disease - Published
- 2021
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11. SKAP2, a Candidate Gene for Type 1 Diabetes, Regulates β-Cell Apoptosis and Glycemic Control in Newly Diagnosed Patients
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Kira Meyerovich, Caroline Frørup, Simranjeet Kaur, Alessandra K Cardozo, Lotte B. Nielsen, Joachim Størling, Michala Prause, Henrik B. Mortensen, Flemming Pociot, and Tina Fløyel
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0301 basic medicine ,medicine.medical_specialty ,Candidate gene ,Endocrinology, Diabetes and Metabolism ,030209 endocrinology & metabolism ,CHOP ,Biology ,Nitric oxide ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Métabolisme ,Internal medicine ,Internal Medicine ,medicine ,Diabétologie ,Gene knockdown ,Endoplasmic reticulum ,Endocrinologie ,Médecine interne ,030104 developmental biology ,Endocrinology ,Islet Studies ,chemistry ,Apoptosis ,Phosphoprotein ,Proto-oncogene tyrosine-protein kinase Src - Abstract
The single nucleotide polymorphism rs7804356 located in the Src kinase-associated phosphoprotein 2 (SKAP2) gene is associated with type 1 diabetes (T1D), suggesting SKAP2 as a causal candidate gene. The objective of the study was to investigate if SKAP2 has a functional role in the b-cells in relation to T1D. In a cohort of children with newly diagnosed T1D, rs7804356 predicted glycemic control and residual b-cell function during the 1st year after diagnosis. In INS-1E cells and rat and human islets, proinflammatory cytokines reduced the content of SKAP2. Functional studies revealed that knockdown of SKAP2 aggravated cytokine-induced apoptosis in INS-1E cells and primary rat b-cells, suggesting an antiapoptotic function of SKAP2. In support of this, overexpression of SKAP2 afforded protection against cytokine-induced ap-optosis, which correlated with reduced nuclear content of S536-phosphorylated nuclear factor-kB (NF-kB) subunit p65, lower nitric oxide production, and diminished CHOP expression indicative of decreased endoplasmic reticu-lum stress. Knockdown of CHOP partially counteracted the increase in cytokine-induced apoptosis caused by SKAP2 knockdown. In conclusion, our results suggest that SKAP2 controls b-cell sensitivity to cytokines possibly by affecting the NF-kB–inducible nitric oxide synthase– endoplasmic reticulum stress pathway., SCOPUS: ar.j, info:eu-repo/semantics/published
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- 2020
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12. Neoplastic Elbow Diseases and Mimickers
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Prudencia N. M. Tyrrell, Simranjeet Kaur, Jaspreet Singh, Radhesh Lalam, and Victor N. Cassar-Pullicino
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medicine.medical_specialty ,business.industry ,Elbow ,Ultrasound ,Normal tissue ,Soft tissue ,Bone Neoplasms ,Soft Tissue Neoplasms ,Delayed diagnosis ,Bone and Bones ,Review article ,medicine.anatomical_structure ,Elbow Joint ,medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,Orthopedics and Sports Medicine ,Radiology ,Differential diagnosis ,business - Abstract
Tumors around the elbow are infrequent, and delayed diagnosis is a common theme because of the low incidence and lack of familiarity. However, just like any other site, the radiologic work-up of musculoskeletal tumors around the elbow remains the same, with plain films the first investigation in a patient with a suspected bone tumor and ultrasound the first modality to evaluate a soft tissue lump. The management of both bone and soft tissue tumors around the elbow is unique because of a large number of important structures in an anatomically confined space and little normal tissue to spare without severely compromising the joint's function. Many benign nonneoplastic entities can mimic bone and soft tissue tumors on imaging. It is important to keep the characteristic imaging appearance in mind while formulating a differential diagnosis to avoid an unnecessary additional work-up. This article reviews the most common benign and malignant bone and soft tissue tumors around the elbow, mimickers, imaging features, and current therapeutic concepts.
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- 2021
13. Plasma Exosome-Enriched Extracellular Vesicles From Lactating Mothers With Type 1 Diabetes Contain Aberrant Levels of miRNAs During the Postpartum Period
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Caroline Frørup, Aashiq H. Mirza, Reza Yarani, Lotte B. Nielsen, Elisabeth R. Mathiesen, Peter Damm, Jens Svare, Christian Engelbrekt, Joachim Størling, Jesper Johannesen, Henrik B. Mortensen, Flemming Pociot, and Simranjeet Kaur
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Adult ,type 1 diabetes ,Immunology ,Mothers ,exosomes ,Biology ,Exosome ,Andrology ,SDG 3 - Good Health and Well-being ,Downregulation and upregulation ,Pregnancy ,Diabetes mellitus ,microRNA ,medicine ,Humans ,Immunology and Allergy ,Circulating MicroRNA ,small RNA-Seq ,plasma ,Original Research ,Type 1 diabetes ,Pancreatic islets ,Postpartum Period ,RC581-607 ,medicine.disease ,Microvesicles ,Breast Feeding ,Diabetes Mellitus, Type 1 ,medicine.anatomical_structure ,miRNAs ,Female ,Immunologic diseases. Allergy ,extracellular vesicles ,Biomarkers ,Postpartum period - Abstract
Type 1 diabetes is an immune-driven disease, where the insulin-producing beta cells from the pancreatic islets of Langerhans becomes target of immune-mediated destruction. Several studies have highlighted the implication of circulating and exosomal microRNAs (miRNAs) in type 1 diabetes, underlining its biomarker value and novel therapeutic potential. Recently, we discovered that exosome-enriched extracellular vesicles carry altered levels of both known and novel miRNAs in breast milk from lactating mothers with type 1 diabetes. In this study, we aimed to characterize exosomal miRNAs in the circulation of lactating mothers with and without type 1 diabetes, hypothesizing that differences in type 1 diabetes risk in offspring from these groups are reflected in the circulating miRNA profile. We performed small RNA sequencing on exosome-enriched extracellular vesicles extracted from plasma of 52 lactating mothers around 5 weeks postpartum (26 with type 1 diabetes and 26 age-matched controls), and found a total of 2,289 miRNAs in vesicles from type 1 diabetes and control libraries. Of these, 176 were differentially expressed in plasma from mothers with type 1 diabetes (167 upregulated; 9 downregulated, using a cut-off of abs(log2FC) >1 and FDR adjusted p-value
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- 2021
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14. SARS-CoV (COVID-19) Pandemic—Detailed Insights into Diagnosis, Management, and Role of Indian Herbal Drugs
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Richa G Thaman, Simranjeet Kaur, Parminder Singh, Rahat Kumar, and Rajiv Choudhari
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medicine.medical_specialty ,Coronavirus disease 2019 (COVID-19) ,business.industry ,Diagnosis management ,Pandemic ,medicine ,General Medicine ,Intensive care medicine ,business - Published
- 2020
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15. An investigation into the effect of ribosomal protein S15 phosphorylation on its intermolecular interactions by using phosphomimetic mutant
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Nabangshu Sharma, Vijayalekshmi Sarojini, Kyriakos G. Varnava, Simranjeet Kaur, Naasson M. Mbenza, Danilo Correddu, and Ivanhoe K. H. Leung
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Ribosomal Proteins ,Mutant ,Peptide ,medicine.disease_cause ,Catalysis ,law.invention ,03 medical and health sciences ,0302 clinical medicine ,Ribosomal protein ,law ,Materials Chemistry ,medicine ,Humans ,Phosphorylation ,030304 developmental biology ,chemistry.chemical_classification ,0303 health sciences ,Mutation ,Chemistry ,Kinase ,Cryoelectron Microscopy ,Metals and Alloys ,Parkinson Disease ,General Chemistry ,LRRK2 ,Recombinant Proteins ,nervous system diseases ,Surfaces, Coatings and Films ,Electronic, Optical and Magnetic Materials ,Cell biology ,Ceramics and Composites ,Recombinant DNA ,Peptides ,030217 neurology & neurosurgery - Abstract
An investigation using recombinant ribosomal proteins and synthetic peptide models was conducted to uncover the effect of the introduction of a negative charge at the C-terminal tail of ribosomal protein S15. Our results help provide a chemical rationale towards understanding how G2019S LRRK2, a common clinical mutation, causes Parkinson's disease.
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- 2020
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16. 55th EASD Annual Meeting of the European Association for the Study of Diabetes
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Rudi Vennekens, Dorte Møller Jensen, Simranjeet Kaur, David Lui, Johan Røikjer, Daniela Marques, Katharina Grupe, Kamilla Miskowiak, Morten Hasselstrøm Jensen, Jens Christian Laursen, David Álvarez-Cilleros, Aase Handberg, Stig Molsted, Flemming Pociot, Knud Yderstraede, Alessandro Di Toro, Annette Bauer-Brandl, Yeray Brito Casillas, Jens Ahm Sørensen, Janusz Gumprecht, Jaco Botha, Dorota Pawełka, Per Trolle Jørgensen, Namson Lau, Jesper Wengel, Muhammad Khan, Hindrik Mulder, Tine Hansen, Hanna Kwiendacz, Andrzej Paradysz, Michal Tendera, Tine Dalsgaard Clausen, Anna Zheleznyakova, Katarzyna Nabrdalik, Peter Rossing, Stefan Mutter, Marija Petkovic, and Rula Bany Bakar
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medicine.medical_specialty ,Screen detected ,business.industry ,Endocrinology, Diabetes and Metabolism ,Disease ,Type 2 diabetes ,medicine.disease ,Internal medicine ,Internal Medicine ,Cardiology ,medicine ,business ,Autonomic neuropathy ,All cause mortality ,Subclinical infection - Published
- 2019
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17. Antioxidant and antimicrobial efficacy of giloy ( Tinospora cordifolia ) stem powder in spent hen meat patties under aerobic packaging at refrigeration temperature (4 ± 1℃)
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Pavan Kumar, Sandeep Singh, Mayank Goswami, Simranjeet Kaur, Nitin Mehta, and Amit Sharma
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Antioxidant ,biology ,Chemistry ,General Chemical Engineering ,Antimicrobial efficacy ,medicine.medical_treatment ,medicine ,General Chemistry ,Refrigeration temperature ,Food science ,Tinospora cordifolia ,biology.organism_classification ,Food Science - Published
- 2021
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18. 1111-P: Integrating Longitudinal Clinical and Baseline Multiomics Data for Predicting C-Peptide Progression in Newly Diagnosed Type 1 Diabetes
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Anke M. Schulte, Søren Brunak, Simranjeet Kaur, Gianluca Mazzoni, Chantal Mathieu, Jose Juan Almagro Armenteros, and Caroline Brorsson
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medicine.medical_specialty ,Type 1 diabetes ,C-peptide ,business.industry ,Endocrinology, Diabetes and Metabolism ,Newly diagnosed ,medicine.disease ,chemistry.chemical_compound ,chemistry ,Internal medicine ,Internal Medicine ,medicine ,business ,Baseline (configuration management) - Abstract
Background: Development of disease-modifying therapy for type 1 diabetes (T1D) is hampered by the limited understanding of pathogenesis, heterogeneity, lack of disease biomarkers and stratifiers. Using the INNODIA consortium pan-European infrastructure to collect prospective clinical data from newly diagnosed subjects combined with multi-omics data, we mined integrated datasets using deep learning to identify novel relationships that could transform the disease monitoring landscape. Method: Samples collected Results: Clustering identified five age-independent subgroups with significantly different progression patterns (p Discussion: The preliminary results suggest that the VAE can learn meaningful progression patterns from integrated clinical and multi-omics data, which holds great promise to uncover important data structures not readily discovered when analyzing single data types. Disclosure C. Brorsson: Employee; Spouse/Partner; Novo Nordisk A/S. J. Almagro armenteros: None. G. Mazzoni: Employee; Self; Novo Nordisk A/S. S. Kaur: None. A. M. Schulte: None. C. Mathieu: Advisory Panel; Self; Novo Nordisk, Sanofi, Merck Sharp and Dohme Ltd., Eli Lilly and Company, Novartis, AstraZeneca, Boehringer Ingelheim, Roche, Medtronic, ActoBio Therapeutics, Pfizer, Insulet and Zealand Pharma, Research Support; Self; Medtronic, Novo Nordisk, Sanofi and ActoBio Therapeutics, Speaker’s Bureau; Self; Novo Nordisk, Sanofi, Eli Lilly and Company, Boehringer Ingelheim, AstraZeneca and Novartis. S. Brunak: Board Member; Self; Intomics A/S, Proscion A/S, Stock/Shareholder; Self; Hoba Therapeutics Aps, Novo Nordisk A/S. On behalf of the innodia consortium: n/a. Funding INNODIA (115797)
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- 2021
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19. Simeprevir Potently Suppresses SARS-CoV-2 Replication and Synergizes with Remdesivir
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Anthony K. N. Chan, Bruno Canard, Kam-Bo Wong, John Chi Wang Ho, Po-Huang Liang, Kaidao Wang, David S.C. Hui, Kuen-Phon Wu, Junzhe Huang, Vincent Mok, Kenrie Pui Yan Hui, Barbara Selisko, Yu Wai Chen, Ho Sing Lo, Hayley Hei Yin Cheung, Khadija Shahed Khan, Cécilia Eydoux, Jean-Claude Guillemot, Chris Ka Pun Mok, Meng Hsuan Lee, Xu He, Ivan Dikic, Hei Ming Lai, Donghyuk Shin, Michael C. W. Chan, Francis K.L. Chan, Ka Chun Ng, Zhongqi Li, Wai-Lung Ng, Peter Man-Hin Cheung, Simranjeet Kaur, Bowen Ma, Wei Shen Aik, Zhong Zuo, Ho Ko, Aix Marseille Université (AMU), Architecture et fonction des macromolécules biologiques (AFMB), and Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
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Simeprevir ,General Chemical Engineering ,Hepatitis C virus ,medicine.medical_treatment ,[SDV]Life Sciences [q-bio] ,viruses ,010402 general chemistry ,medicine.disease_cause ,01 natural sciences ,chemistry.chemical_compound ,Immune system ,RNA polymerase ,medicine ,Protease inhibitor (pharmacology) ,QD1-999 ,ComputingMilieux_MISCELLANEOUS ,Protease ,010405 organic chemistry ,business.industry ,virus diseases ,General Chemistry ,Virology ,In vitro ,0104 chemical sciences ,Chemistry ,chemistry ,business ,Viral load ,Research Article - Abstract
The outbreak of coronavirus disease 2019 (COVID-19), caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), is a global threat to human health. Using a multidisciplinary approach, we identified and validated the hepatitis C virus (HCV) protease inhibitor simeprevir as an especially promising repurposable drug for treating COVID-19. Simeprevir potently reduces SARS-CoV-2 viral load by multiple orders of magnitude and synergizes with remdesivir in vitro. Mechanistically, we showed that simeprevir not only inhibits the main protease (Mpro) and unexpectedly the RNA-dependent RNA polymerase (RdRp) but also modulates host immune responses. Our results thus reveal the possible anti-SARS-CoV-2 mechanism of simeprevir and highlight the translational potential of optimizing simeprevir as a therapeutic agent for managing COVID-19 and future outbreaks of CoV., Simeprevir, an HCV drug, suppresses SARS-CoV-2 replication by inhibiting two viral proteins and modulating host immune responses, thus providing novel insights in anti-CoV drug design.
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- 2021
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20. Synthesis, Molecular Docking, and Biological Evaluation of Some Novel 2- (5-Substituted 1,3,4-oxadiazole-2-yl)-1,3-benzothiazole Derivatives as Anticonvulsant Agents
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Karan Wadhwa, Simranjeet Kaur, Sukhbir Lal Khokra, Sahil Banwala, and Asif Husain
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chemistry.chemical_classification ,Oxadiazoles ,Stereochemistry ,General Neuroscience ,medicine.medical_treatment ,Oxadiazole ,Molecular Docking Simulation ,chemistry.chemical_compound ,Anticonvulsant Agent ,Structure-Activity Relationship ,Neuropsychology and Physiological Psychology ,Anticonvulsant ,Benzothiazole ,chemistry ,In vivo ,Heterocyclic compound ,Docking (molecular) ,medicine ,Molecular Medicine ,Anticonvulsants ,Target protein ,Benzothiazoles - Abstract
Background: Benzothiazole is an organosulfur heterocyclic compound that has a considerable place in drug discovery due to significant pharmacological actions. Objective: The main objective of the present study was to synthesize some novel 2-(5-substituted 1,3,4-oxadiazole-2-yl)-1,3-benzothiazole derivatives and evaluate them for their anticonvulsant activity using in silico and in vivo methods. Methods: A set of sixteen 2-(5-substituted 1, 3, 4-oxadiazole-2-yl)-1, 3-benzothiazole derivatives were prepared using multi-step reactions starting from o-amino-thiophenol and characterized by suitable spectral techniques. The synthesized compounds were evaluated for anticonvulsant activity using in silico and in vivo methods. In silico molecular docking study was performed using Molegro Virtual Docker software to analyze binding modes of compounds with the internal ligand of PDB ID: 1OHY and 1OHV; and in vivo pharmacological activities were tested for both generalized tonic-clonic seizures and generalized absence (petit mal) seizures using Maximal Electrical Shock and PTZ-induced seizure models, respectively. Results: Some new 2-(5-substituted-1,3,4-oxadiazole-2-yl)-1,3- benzothiazole (5a-5p) were successfully synthesized by finally refluxing 1, 3-benzothiazole-2-carboxyhydrazide with different aromatic acids in phosphoryl chloride. Docking results showed that compounds 5c, 5j, and 5m were found to have the highest number of H-bond interactions; i.e. 4, 4, and 7 respectively with target proteins 1OHY and 6, 3, and 4 respectively with target protein 1OHV, whereas phenytoin showed only two H-bonding with both proteins. In the Maximal electroshock seizure method, the synthesized compounds 5h, 5k and 5o demonstrated potent anticonvulsant activity against the tonic seizure with a significant decrease in tonic hind leg extension period with a mean duration of 7.9, 7.4, and 7.0 sec respectively, as compared to the other synthesized compounds. In contrast, in the PTZ-induced seizure model, compounds 5c, 5h, and 5m showed protection against clonic convulsion with significant elevation in the onset time of clonic convulsion at 311.2, 308.0, and 333.11 sec, respectively. Conclusion: Thus, from the results, it can be concluded that compound 5h, a benzothiazole derivative endowed with an oxadiazole ring, can be developed as a potential anticonvulsant agent.
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- 2021
21. AN OVERVIEW ON COMBINATION THERAPY FOR MALARIA
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Sakshi Sabharwal, Saurabh Singh, Simranjeet kaur, Nitika Anand, and Dileep Singh baghel
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medicine.medical_specialty ,Combination therapy ,business.industry ,parasitic diseases ,medicine ,Plant Science ,medicine.disease ,Intensive care medicine ,business ,Malaria - Abstract
"Malaria is one among the premier dangerous illness conditions in the world. Ayurvedic Physicians are treating malaria since antiquated occasions". Portrayal concerning aetiopathogenesis, clinical features and line of the board are unmistakable under "Vishamajvara". Malaria could even be a preventable and treatable infection. The essential goal of therapy is to make sure total fix, that is the fast and full disposal of the Plasmodium parasite from the patient's blood, so on forestall movement of straightforward malaria to serious ailment or passing, and to forestall incessant disease that prompts malaria related to anaemia. Considering its wide force and making drug affirmation from intestinal sickness parasite, CCRAS has built up a polyherbal non-toxic, threatening to malarial solution through wide pharmacological, toxicological and clinical appraisals. This has been named AYUSH-64. Ayush-64 contains four Ayurvedic herbs which are Alstonia scholaris (aqueous bark extract), Picrorhiza kurroa (aqueous rhizome extract), Swertia chirata (aqueous extract of whole plant) and Caesalpinia crista (fine-powdered seed pulp), developed and patented by CCRAS in India around 38 years ago. Present review highlights the Ayurvedic and herbal drugs combination of malaria which provides the new directions of traditional medicines for treating malaria.
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- 2020
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22. Neuro-protective potential of quercetin during chlorpyrifos induced neurotoxicity in rats
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D. K. Dhawan, Neha Singla, and Simranjeet Kaur
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Health, Toxicology and Mutagenesis ,Neurotoxins ,macromolecular substances ,Motor Activity ,010501 environmental sciences ,Pharmacology ,Toxicology ,medicine.disease_cause ,01 natural sciences ,Choline O-Acetyltransferase ,Superoxide dismutase ,Lipid peroxidation ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,medicine ,Animals ,heterocyclic compounds ,Rats, Wistar ,Maze Learning ,0105 earth and related environmental sciences ,Brain Chemistry ,Chemical Health and Safety ,biology ,Superoxide Dismutase ,Public Health, Environmental and Occupational Health ,Neurotoxicity ,Brain ,General Medicine ,Catalase ,medicine.disease ,Acetylcholinesterase ,Acetylcholine ,Rats ,Neuroprotective Agents ,chemistry ,Chlorpyrifos ,biology.protein ,Female ,Quercetin ,Lipid Peroxidation ,030217 neurology & neurosurgery ,Oxidative stress - Abstract
Chlorpyrifos (CPF) has been considered as one of the most potent organophosphates and is linked to several neurological disorders. On the other hand, Quercetin is a vital plant flavanoid and has been reported to regulate a number of physiological processes in the central nervous system. The present study was conducted to investigate the protective potential of quercetin during chlorpyrifos induced neurotoxicity. Female Wistar rats weighing 150-200 g were divided into four different groups viz: Normal control, CPF treated (13.5 mg/kg.b.wt. every alternate day), Quercetin treated (50 mg/kg.b.wt./day) and combined CPF and quercetin-treated. All the treatments were carried out for a total duration of eight weeks. Chlorpyrifos treatment showed significant alterations in the cognitive behavior and motor activities of rats, which were appreciably improved upon simultaneous supplementation with quercetin. Further, CPF treatment caused a significant inhibition in the enzyme activities of acetylcholinesterase and choline acetyltransferase, but caused an increase in the levels of acetylcholine in the brain. Further, chlorpyrifos exposure significantly elevated the levels of lipid peroxidation and protein carbonyl contents as well as the activities of catalase, superoxide dismutase, which were interestingly found to be decreased following co-treatment with quercetin. In contrast, CPF treatment decreased the activities of glutathione reductase, transferase, as well as levels of reduced and total glutathione in both the cerebrum and cerebellum but co-administration of quercetin, increased these levels. Chlorpyrifos treatment altered the neuro-histoarchitecture, which showed improvement upon quercetin supplementation. Hence, this study suggests that quercetin can be used as a prophylactic intervention to prevent CPF induced neurotoxicity.
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- 2019
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23. Simeprevir potently suppresses SARS-CoV-2 replication and synergizes with remdesivir
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Junzhe Huang, Khadija Shahed Khan, Vincent Mok, Anthony K. N. Chan, Zhong Zuo, Ho Ko, Kenrie Pui Yan Hui, Michael C. W. Chan, Kam-Bo Wong, Francis K.L. Chan, Kaidao Wang, Hei-Ming Lai, Bruno Canard, David S.C. Hui, Donghyuk Shin, Kuen-Phon Wu, Ho Sing Lo, Meng-Hsuan Lee, Po-Huang Liang, Jean-Claude Guillemot, Wai-Lung Ng, Cécilia Eydoux, Peter Man-Hin Cheung, Barbara Selisko, Ka-Chun Ng, Ivan Dikic, Yu Wai Chen, Hayley Hei-Yin Cheung, Bowen Ma, Wei Shen Aik, Simranjeet Kaur, Zhongqi Li, and John Chi Wang Ho
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Simeprevir ,Protease ,Viral protein ,business.industry ,viruses ,Hepatitis C virus ,medicine.medical_treatment ,medicine.disease_cause ,Virology ,chemistry.chemical_compound ,chemistry ,Viral replication ,RNA polymerase ,medicine ,Protease inhibitor (pharmacology) ,business ,Viral load - Abstract
The outbreak of coronavirus disease 2019 (COVID-19), caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), is a global threat to human health. Using a multidisciplinary approach, we identified and validated the hepatitis C virus (HCV) protease inhibitor simeprevir as an especially promising repurposable drug for treating COVID-19. Simeprevir potently reduces SARS-CoV-2 viral load by multiple orders of magnitude and synergizes with remdesivir in vitro. Mechanistically, we showed that simeprevir inhibits the main protease (Mpro) and unexpectedly the RNA-dependent RNA polymerase (RdRp). Our results thus reveal the viral protein targets of simeprevir, and provide preclinical rationale for the combination of simeprevir and remdesivir for the pharmacological management of COVID-19 patients.One Sentence SummaryDiscovery of simeprevir as a potent suppressor of SARS-CoV-2 viral replication that synergizes with remdesivir.
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- 2020
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24. 54th EASD Annual Meeting of the European Association for the Study of Diabetes
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Jessica Harding, Elisabeth Mathiesen, Filip K Knop, Simranjeet Kaur, Tina Nie, Daniela Marques, Katharina Grupe, Lars Díaz, Norbert Hermanns, David Álvarez-Cilleros, Patricia Rodrigues Lourenço Gomes, Lana McClements, Flemming Pociot, Knud Yderstraede, Alexander Y. Mayorov, Gregers Stig Andersen, Nicklas Järvelä Johansen, Kumar Prafull Chandra, Piotr Nehring, Maria Concetta Morrone, Sam Riahi, Marie Borring Klitgaard, Christina Brock, Asbjørn Drewes, Niklas Rye Jørgensen, Manu Verma, Hilde Hop, Lene Ringholm, Fredrick Mobegi, Hindrik Mulder, Tine Hansen, Maria Buur Nordskov Gabe, Anna Zheleznyakova, Elaine Cowan, Gerrit Van Hall, Peter Rossing, Stefan Mutter, Beatriz Martins, and Mette Marie Rosenkilde
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Insulin pump ,medicine.medical_specialty ,Self-management ,business.industry ,Endocrinology, Diabetes and Metabolism ,030209 endocrinology & metabolism ,030204 cardiovascular system & hematology ,law.invention ,03 medical and health sciences ,0302 clinical medicine ,Randomized controlled trial ,law ,Internal Medicine ,Physical therapy ,medicine ,business - Published
- 2018
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25. Descriptive Study to Assess the Knowledge of Staff Nurses Regarding Forensic Psychiatry at Selected Hospitals, Amritsar
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Simranjeet Kaur, Sumanjeet Kaur, Shivam Sharma, Sandeep Kaur, Shabnam Lnu, Amandeep K Bajwa, Simranjit Kaur, and Rupinder Kaur
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medicine.medical_specialty ,Nursing staff ,Forensic psychiatry ,Family medicine ,medicine ,General Medicine ,Descriptive research ,Psychology - Published
- 2019
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26. Long Noncoding RNAs in Diabetes and β-Cell Regulation
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Anne Julie Overgaard, Reza Yarani, Simranjeet Kaur, Aashiq H. Mirza, Flemming Pociot, Verena Hirschberg Jensen, Joana Melo, Joachim Størling, and Caroline Frørup
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Type 1 diabetes ,Insulin resistance ,Histone ,Diabetes mellitus ,medicine ,biology.protein ,Type 2 diabetes ,Epigenetics ,Biology ,medicine.disease ,Bioinformatics ,Long non-coding RNA ,Chromatin - Abstract
Diabetes is characterized by an insufficient physiological response to increases in blood glucose. There are two major types of diabetes: type 1 diabetes (T1D) and type 2 diabetes (T2D). T1D is the result of an immune-mediated destruction of the pancreatic β cells, whereas T2D is characterized by reduced β-cell function and insulin resistance. The incidence of both diabetes forms is increasing worldwide and has doubled since the 1980s. Long-term complications of diabetes include serious micro- and macro-vascular complications and an increased risk of premature death due to dysfunction and failure of various organs caused in part by the toxic effects of high blood glucose levels. In both forms of diabetes, genetic, epigenetic, and environmental factors contribute to the risk of developing the disease. Aberrant epigenetic modifications such as DNA methylation, histone modifications, and noncoding RNAs (ncRNAs) are well-recognized players in both T1D and T2D. Recent advances in chromosome conformation capture technologies have provided novel insights into the spatial arrangement of chromatin and have revealed the importance of β-cell-specific lncRNAs in gene regulation and 3D chromatin folding in the β cells. This chapter provides a comprehensive review covering lncRNAs in diabetes and their role in 3D chromatin architecture and β-cell dysfunction and apoptosis.
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- 2020
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27. Characterization of plasma lipidomics in adolescent subjects with increased risk for type 1 diabetes in the DiPiS cohort
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Simranjeet Kaur, Anne Julie Overgaard, Marlena Maziarz, Agnes Andersson Svärd, Tommi Suvitaival, Åke Lernmark, Kajetan Trošt, and Flemming Pociot
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Male ,medicine.medical_specialty ,Adolescent ,Genotype ,Endocrinology, Diabetes and Metabolism ,medicine.medical_treatment ,Clinical Biochemistry ,Population ,030209 endocrinology & metabolism ,Autoimmunity ,Biochemistry ,Cohort Studies ,03 medical and health sciences ,0302 clinical medicine ,Diabetes mellitus ,Internal medicine ,Lipidomics ,Medicine ,Humans ,Metabolomics ,education ,Child ,030304 developmental biology ,Autoantibodies ,Sweden ,0303 health sciences ,Type 1 diabetes ,education.field_of_study ,geography ,geography.geographical_feature_category ,business.industry ,Insulin ,Autoantibody ,medicine.disease ,Islet ,Lipid Metabolism ,Lipids ,Endocrinology ,Cross-Sectional Studies ,Diabetes Mellitus, Type 1 ,Cohort ,Female ,Original Article ,business ,Prediction - Abstract
Introduction Type 1 diabetes (T1D) is caused by the destruction of pancreatic islet beta cells resulting in total loss of insulin production. Recent studies have suggested that the destruction may be interrelated to plasma lipids. Objectives Specific lipids have previously been shown to be decreased in children who develop T1D before four years of age. Disturbances of plasma lipids prior to clinical diagnosis of diabetes, if true, may provide a novel way to improve prediction, and monitor disease progression. Methods A lipidomic approach was utilized to analyze plasma from 67 healthy adolescent subjects (10–15 years of age) with or without islet autoantibodies but all with increased genetic risk for T1D. The study subjects were enrolled at birth in the Diabetes Prediction in Skåne (DiPiS) study and after 10–15 years of follow-up we performed the present cross-sectional analysis. HLA-DRB345, -DRB1, -DQA1, -DQB1, -DPA1 and -DPB1 genotypes were determined using next generation sequencing. Lipidomic profiles were determined using ultra-high-performance liquid chromatography quadrupole time-of-flight mass spectrometry. Lipidomics data were analyzed according to genotype. Results Variation in levels of several specific phospholipid species were related to level of autoimmunity but not development of T1D. Five glycosylated ceramides were increased in insulin autoantibody (IAA) positive adolescent subjects compared to adolescent subjects without this autoantibody. Additionally, HLA genotypes seemed to influence levels of long chain triacylglycerol (TG). Conclusion Lipidomic profiling of adolescent subjects in high risk of T1D may improve sub-phenotyping in this high risk population.
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- 2019
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28. The Effectiveness of Neuro Muscular Electrical Stimulation on Hand Function in Sub Acute Stroke Survivors: A Systematic Review of Randomized Controlled Trials
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Nainky Bhalla, Navkaran Shergill, and Simranjeet Kaur
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medicine.medical_specialty ,Physical medicine and rehabilitation ,Hand function ,Randomized controlled trial ,law ,business.industry ,medicine ,Stimulation ,Sub acute ,Stroke survivor ,business ,law.invention - Published
- 2019
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29. Glyco25, XXV International Symposium on Glycoconjugates
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Tamara Pavić, Simranjeet Kaur, Flemming Pociot, Ana Cvetko, Najda Rudman, Grant Morahan, Vesna Simunović, Lucija Klaric, Toma Keser, Domagoj Kifer, Olga Gornik, Unité de Glycobiologie Structurale et Fonctionnelle UMR 8576 (UGSF), Université de Lille-Institut National de la Recherche Agronomique (INRA)-Centre National de la Recherche Scientifique (CNRS), Unité de Glycobiologie Structurale et Fonctionnelle - UMR 8576 (UGSF), Université de Lille-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Recherche Agronomique (INRA), and Université de Lille-Centre National de la Recherche Scientifique (CNRS)
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[SDV.BIO]Life Sciences [q-bio]/Biotechnology ,[SDV.CAN]Life Sciences [q-bio]/Cancer ,Newly diagnosed ,[SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy ,Biochemistry ,03 medical and health sciences ,0302 clinical medicine ,[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN] ,medicine ,[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biochemistry [q-bio.BM] ,Molecular Biology ,ComputingMilieux_MISCELLANEOUS ,030304 developmental biology ,Genetic association ,0303 health sciences ,Type 1 diabetes ,business.industry ,[SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE] ,[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology ,[SDV.BBM.MN]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular Networks [q-bio.MN] ,Cell Biology ,medicine.disease ,Blood proteins ,[SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM] ,[SDV.BBM.BC]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biomolecules [q-bio.BM] ,Glycan profiling ,Immunology ,business ,030215 immunology - Abstract
International audience
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- 2019
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30. The Rac2 GTPase contributes to cathepsin H-mediated protection against cytokine-induced apoptosis in insulin-secreting cells
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Tina Fløyel, Flemming Pociot, Aashiq H. Mirza, Joachim Størling, Reza Yarani, Simranjeet Kaur, and Caroline Frørup
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Cell death ,EXPRESSION ,0301 basic medicine ,Cathepsin H ,Programmed cell death ,Chemokine ,Candidate gene ,medicine.medical_treatment ,PATHOGENESIS ,Apoptosis ,030209 endocrinology & metabolism ,Microarray ,Biology ,Biochemistry ,CANDIDATE GENES ,CYCLOOXYGENASE-2 ,ACTIVATION ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Endocrinology ,HUMAN PANCREATIC-ISLETS ,Insulin-Secreting Cells ,medicine ,Animals ,Humans ,GENOME-WIDE ASSOCIATION ,Molecular Biology ,Cells, Cultured ,Inflammation ,Gene knockdown ,NITRIC-OXIDE ,Microarray analysis techniques ,Rats ,rac GTP-Binding Proteins ,Cell biology ,Beta cell ,Type 1 diabetes ,030104 developmental biology ,Cytokine ,Cytoprotection ,biology.protein ,Cytokines ,REACTIVE OXYGEN ,Signal transduction ,CTSH - Abstract
The type 1 diabetes (T1D) risk locus on chromosome 15q25.1 harbors the candidate gene CTSH (cathepsin H). We previously demonstrated that CTSH regulates beta-cell function in vitro and in vivo. CTSH overexpression protected insulin-secreting INS-1 cells against cytokine-induced apoptosis. The purpose of the present study was to identify the genes through which CTSH mediates its protective effects. Micmarray analysis identified 63 annotated genes differentially expressed between CTSH-overexpressing INS-1 cells and control cells treated with interleukin-1 beta and interferon-gamma for up to 16h. Permutation test identified 10 significant genes across all timepoints: Elmod1, Fam49a, Gas7, Gnal5, Msrb3, Nox1, Ptgs1, Rac2, Scn7a and Ttn. Pathway analysis identified the "Inflammation mediated by chemokine and cytokine signaling pathway" with Gnal5, Ptgs1 and Rac2 as significant. Knockdown of Rac2 abolished the protective effect of CTSH overexpression on cytokine-induced apoptosis, suggesting that the small GTPase and T1D candidate gene Rac2 contributes to the anti-apoptotic effect of CTSH.
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- 2020
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31. Influence of Disease Duration on Circulating Levels of miRNAs in Children and Adolescents with New Onset Type 1 Diabetes
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Nasim Samandari, Simranjeet Kaur, Philip Hougaard, Siri Fredheim, Aashiq H. Mirza, Lotte B Nielsen, Flemming Pociot, and Henrik B. Mortensen
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0301 basic medicine ,lcsh:QH426-470 ,type 1 diabetes ,medicine.medical_treatment ,Disease ,Biochemistry ,Article ,immunology ,03 medical and health sciences ,children ,microRNA ,Genetics ,medicine ,Molecular Biology ,miRNA ,Type 1 diabetes ,molecular_biology ,biology ,business.industry ,Autoantibody ,medicine.disease ,body regions ,lcsh:Genetics ,Circulating MicroRNA ,030104 developmental biology ,Cytokine ,embryonic structures ,Cohort ,Immunology ,biology.protein ,Antibody ,business ,partial remission phase - Abstract
Circulating microRNAs (miRNAs) have been implicated in several pathologies including type 1 diabetes. In the present study, we aimed to identify circulating miRNAs affected by disease duration in children with recent onset type 1 diabetes. Forty children and adolescents from the Danish Remission Phase Cohort were followed with blood samples drawn at 1, 3, 6, 12, and 60 months after diagnosis. Pancreatic autoantibodies were measured at each visit. Cytokines were measured only the first year. miRNA expression profiling was performed by RT-qPCR. The effect of disease duration was analyzed by mixed models for repeated measurements adjusted for sex and age. Eight miRNAs (hsa-miR-10b-5p, hsa-miR-17-5p, hsa-miR-30e-5p, hsa-miR-93-5p, hsa-miR-99a-5p, hsa-miR-125b-5p, hsa-miR-423-3p, and hsa-miR-497-5p) were found to significantly change in expression (adjusted p-value <, 0.05) with disease progression. Three pancreatic autoantibodies, ICA, IA-2A, and GAD65A, and four cytokines, IL-4, IL-10, IL-21, and IL-22, were associated with the miRNAs at different time points. Pathway analysis revealed associations with various immune-mediated signaling pathways. Eight miRNAs that were involved in immunological pathways changed expression levels during the first five years after diagnosis and were associated with variations in cytokine and pancreatic antibodies, suggesting a possible effect on the immunological processes in the early phase of the disease.
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- 2018
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32. miRNA-27a-3p and miRNA-222-3p as Novel Modulators of Phosphodiesterase 3a (PDE3A) in Cerebral Microvascular Endothelial Cells
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Simranjeet Kaur, Birger Brodin, S Yasmeen, Christina Kruuse, Flemming Pociot, and Aashiq H. Mirza
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0301 basic medicine ,DNA, Complementary ,Cell Survival ,In silico ,Neuroscience (miscellaneous) ,Context (language use) ,Biology ,Cell Line ,03 medical and health sciences ,Cellular and Molecular Neuroscience ,0302 clinical medicine ,microRNA ,Gene expression ,medicine ,Humans ,Cognitive decline ,Endothelial dysfunction ,Neurons ,Brain ,Endothelial Cells ,Transfection ,medicine.disease ,Cyclic Nucleotide Phosphodiesterases, Type 3 ,Cell biology ,Endothelial stem cell ,MicroRNAs ,030104 developmental biology ,Neurology ,Gene Expression Regulation ,Microvessels ,030217 neurology & neurosurgery - Abstract
Endothelial dysfunction is a key element in cerebral small vessel disease (CSVD), which may cause stroke and cognitive decline. Cyclic nucleotide signaling modulates endothelial function. The cyclic adenosine monophosphate-degrading enzyme phosphodiesterase 3 (PDE3) is an important treatment target which may be modulated by microRNAs (miRNAs) important for regulating gene expression. We aimed to identify PDE3-targeting miRNAs to highlight potential therapeutic targets for endothelial dysfunction and CSVD. PDE3-targeting miRNAs were identified by in silico analysis (TargetScan, miRWalk, miRanda, and RNA22). The identified miRNAs were ranked on the basis of TargetScan context scores and their expression (log2 read counts) in a human brain endothelial cell line (hCMEC/D3) described recently. miRNAs were subjected to co-expression meta-analysis (CoMeTa) to create miRNA clusters. The pathways targeted by the miRNAs were assigned functional annotations via the KEGG pathway and COOL. hCMEC/D3 cells were transfected with miRNA mimics miR-27a-3p and miR-222-3p, and the effect on PDE3A protein expression was analyzed by Western blotting. Only PDE3A is expressed in hCMEC/D3 cells. The in silico prediction identified 67 PDE3A-related miRNAs, of which 49 were expressed in hCMEC/D3 cells. Further analysis of the top two miRNA clusters (miR-221/miR-222 and miR-27a/miR-27b/miR-128) indicated a potential link to pathways relevant to cerebral and vascular integrity and repair. hCMEC/D3 cells transfected with miR-27a-3p and miR-222-3p mimics had reduced relative expression of PDE3A protein. PDE3A-related miRNAs miR-221/miR-222 and miR-27a/miR-27b/miR-128 are potentially linked to pathways essential for immune regulation as well as cerebral and vascular integrity/function. Furthermore, relative PDE3A protein expression was reduced by miR27a-3p and miR-222-3p.
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- 2018
33. Sonography in male infertility: a look beyond the obvious
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Simranjeet Kaur, Arpita Sinha, Raj Pal, Anupama Tandon, Prateek Sihag, Bosky Jain, and Shuchi Bhatt
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Infertility ,Male ,medicine.medical_specialty ,Population ,Reproductive age ,030218 nuclear medicine & medical imaging ,Male infertility ,03 medical and health sciences ,0302 clinical medicine ,Internal Medicine ,Medicine ,Humans ,Radiology, Nuclear Medicine and imaging ,education ,Infertility, Male ,Ultrasonography ,Azoospermia ,education.field_of_study ,030219 obstetrics & reproductive medicine ,Male factor ,business.industry ,Obstetrics ,General Medicine ,medicine.disease ,Pictorial Essay ,business - Abstract
Infertility affects 15–20% of the reproductive age range population; the male factor accounts for up to 40–60% of these. With female factor infertility catching most of the limelight in research, diagnosis and treatment, the other half of the problem has not been duly addressed. Imaging has an important role to play in the evaluation of male infertility, especially to identify correctible (obstructive) causes. We review the scrotal, trans-rectal sonographic and Doppler findings in infertile men to aid in the accurate diagnosis and proper management of such patients.
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- 2018
34. Cell Type-Selective Expression of Circular RNAs in Human Pancreatic Islets
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Flemming Pociot, Simranjeet Kaur, and Aashiq H. Mirza
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0301 basic medicine ,Gene isoform ,Cell type ,endocrine system ,endocrine system diseases ,lcsh:QH426-470 ,type 1 diabetes ,RNA-Seq ,Biology ,Biochemistry ,human islets ,Article ,03 medical and health sciences ,Gene expression ,Genetics ,medicine ,circRNA ,Molecular Biology ,Gene ,Pancreatic islets ,RNA ,β-cell ,3. Good health ,Cell biology ,lcsh:Genetics ,030104 developmental biology ,medicine.anatomical_structure ,RNA-seq ,Function (biology) ,circular RNAs - Abstract
Understanding distinct cell-type specific gene expression in human pancreatic islets is important for developing islet regeneration strategies and therapies to improve &beta, cell function in type 1 diabetes (T1D). While numerous transcriptome-wide studies on human islet cell-types have focused on protein-coding genes, the non-coding repertoire, such as long non-coding RNA, including circular RNAs, remains mostly unexplored. Here, we explored transcriptional landscape of human &alpha, &beta, and exocrine cells from published total RNA sequencing (RNA-seq) datasets to identify circular RNAs (circRNAs). Our analysis revealed that circRNAs are highly abundant in both &alpha, and &beta, cells. We identified 10,830 high-confidence circRNAs expressed in human &alpha, and exocrine cells. The most highly expressed candidates were MAN1A2, RMST, and HIPK3 across the three cell-types. Alternate circular isoforms were observed for circRNAs in the three cell-types, indicative of potential distinct functions. Highly selective &alpha, cell circRNAs were identified, which is suggestive of their potential role in regulating &beta, cell function.
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- 2018
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35. A revised technique for fabrication of hollow mandibular denture: A solution to severely resorbed residual ridge
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Varun Baslas, Kamleshwar Singh, Pradeep Kumar, Simranjeet Kaur, and Himanshi Aggarwal
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Materials science ,Fabrication ,medicine.medical_treatment ,Dentistry ,chemistry.chemical_compound ,Silicone ,Putty ,medicine ,light weight denture ,Acrylic resin ,Reduction (orthopedic surgery) ,geography ,geography.geographical_feature_category ,business.industry ,technology, industry, and agriculture ,General Medicine ,lcsh:RK1-715 ,chemistry ,Hollow denture ,Ridge ,visual_art ,lcsh:Dentistry ,visual_art.visual_art_medium ,Denture base ,resorbed ridges ,Dentures ,business - Abstract
Purpose: Prosthodontic rehabilitation of elderly patients with severely resorbed ridges is difficult due to compromised ridge height, increased inter-arch distance and altered insertion of associated jaw muscles. Planning dentures in such cases often require dentures that are lightweight to reduce the risk of further ridge resorption, which could otherwise complicate the situation. The purpose of the present technique is to fabricate a light weight lower denture by a revision of previously described technique in the literature. Materials and Methods: This article elucidates a simple technique for the fabrication of lightweight denture (hollow denture) in elderly patients with severely resorbed mandibular ridge. The minimum thickness of denture base acrylic resin for structural durability is ensured by a wax shim of 2 mm. The adequate hollow space indenture for optimal weight reduction is created by condensation silicone impression material. Conclusion: Condensation silicone putty material can be successfully used as a spacer for hollow dentures to combat severe ridge resorption.
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- 2015
36. Comparative evaluation of surface properties of enamel and different esthetic restorative materials under erosive and abrasive challenges: An in vitro study
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Rajneesh Kumar, Shinam Pasricha, Pranav Gupta, Simranjeet Kaur, and Sameer Makkar
- Subjects
Abrasion (dental) ,Materials science ,Enamel paint ,business.industry ,Composite number ,Abrasive ,Glass ionomer cement ,Dentistry ,nanofilled composite ,soft drink ,medicine.disease ,Microfilled composite ,resin modified glass ionomer cement ,Comparative evaluation ,stomatognathic system ,visual_art ,medicine ,visual_art.visual_art_medium ,In vitro study ,tooth brush ,Original Article ,Tooth surface loss ,business - Abstract
Introduction: Noncarious tooth surface loss is a normal physiological process occurring throughout the life, but it can often become a problem affecting function, esthetics or cause pain. Aim: The purpose of this study was to assess the effect of erosive and abrasive challenges on the surface microhardness and surface wear of enamel and three different restorative materials, that is, nanofilled composite, microfilled composite and resin-modified glass ionomer cement (RMGIC) by using Vickers microhardness tester and profilometer respectively. Subjects and Methods: Nanofilled composite (Filtek ™ Z350 × T), microfilled composite (Heliomolar ® ) and RMGIC (Fuji II LC) were used in the study. Results: Nanofilled composite resin has the best resistance to erosion and/or abrasion among all the materials tested, followed by microfilled composite and RMGIC respectively. Conclusion: Toothbrush abrasion has a synergistic effect with erosion on substance loss of human enamel, composites, and RMGIC. The susceptibility to acid and/or toothbrush abrasion of human enamel was higher compared to restorative materials.
- Published
- 2015
37. Comparative Study Between Oral Lorazepam and Diazepam as Sedation in Oral and Maxillofacial Surgery
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Parul Sharma, Simranjeet Kaur, Akanksha Zutshi, Vikas Sharma, and Amaninder Singh
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medicine.medical_specialty ,Impaction ,business.industry ,Sedation ,Lorazepam ,030206 dentistry ,Bioequivalence ,03 medical and health sciences ,0302 clinical medicine ,Otorhinolaryngology ,Anesthesia ,mental disorders ,medicine ,Oral and maxillofacial surgery ,Surgery ,Premedication ,Original Article ,Oral Surgery ,medicine.symptom ,030223 otorhinolaryngology ,business ,Diazepam ,medicine.drug - Abstract
PURPOSE: The aim of the study was to compare the efficacy of oral lorazepam as night sedation and premedication with diazepam. METHODS: A prospective, randomized, and double-blind study was done in 50 healthy patients in each drug group. The impacted third molar impaction was taken as the study model. Study was carried out after giving bioequivalent doses of respective drugs for either side. All the patients were assessed for quality of sleep, sedation, recall of visual stimuli, cooperation shown by patient and recovery postoperatively. RESULTS: The study concluded that lorazepam showed more advantages than diazepam as well as patient’s preference and satisfaction. However, postoperative recovery with lorazepam was longer than diazepam.
- Published
- 2017
38. Abnormal islet sphingolipid metabolism in type 1 diabetes
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Simranjeet Kaur, Bobby P. C. Koeleman, Laura A. Claessens, Ivan C. Gerling, Laurits J. Holm, Flemming Pociot, Karsten Buschard, Kristian F. Hanssen, Mark Russell, Lars Krogvold, Bart O. Roep, Noel G. Morgan, Knut Dahl-Jørgensen, Clayton E. Mathews, and Jane Preuss Hasselby
- Subjects
0301 basic medicine ,Male ,Endocrinology, Diabetes and Metabolism ,T-Lymphocytes ,Autoimmunity ,medicine.disease_cause ,Lymphocyte Activation ,Sphingolipid ,Fenofibrate ,Mice, Inbred NOD ,GWAS ,Cells, Cultured ,NOD mice ,geography.geographical_feature_category ,Gene polymorphisms ,Islet ,3. Good health ,Type 1 diabetes ,medicine.anatomical_structure ,Female ,Beta cell ,Adult ,medicine.medical_specialty ,T cells ,Biology ,Gene Expression Regulation, Enzymologic ,03 medical and health sciences ,Islets of Langerhans ,Internal medicine ,Diabetes mellitus ,Internal Medicine ,medicine ,Animals ,Humans ,Islet autoimmunity ,Cell Proliferation ,geography ,Polymorphism, Genetic ,Sulfoglycosphingolipids ,Prevention ,Pancreatic islets ,medicine.disease ,Lipid Metabolism ,Disease Models, Animal ,030104 developmental biology ,Endocrinology ,Diabetes Mellitus, Type 1 ,Case-Control Studies ,Sulfatide - Abstract
Sphingolipids play important roles in beta cell physiology, by regulating proinsulin folding and insulin secretion and in controlling apoptosis, as studied in animal models and cell cultures. Here we investigate whether sphingolipid metabolism may contribute to the pathogenesis of human type 1 diabetes and whether increasing the levels of the sphingolipid sulfatide would prevent models of diabetes in NOD mice. We examined the amount and distribution of sulfatide in human pancreatic islets by immunohistochemistry, immunofluorescence and electron microscopy. Transcriptional analysis was used to evaluate expression of sphingolipid-related genes in isolated human islets. Genome-wide association studies (GWAS) and a T cell proliferation assay were used to identify type 1 diabetes related polymorphisms and test how these affect cellular islet autoimmunity. Finally, we treated NOD mice with fenofibrate, a known activator of sulfatide biosynthesis, to evaluate the effect on experimental autoimmune diabetes development. We found reduced amounts of sulfatide, 23% of the levels in control participants, in pancreatic islets of individuals with newly diagnosed type 1 diabetes, which were associated with reduced expression of enzymes involved in sphingolipid metabolism. Next, we discovered eight gene polymorphisms (ORMDL3, SPHK2, B4GALNT1, SLC1A5, GALC, PPARD, PPARG and B4GALT1) involved in sphingolipid metabolism that contribute to the genetic predisposition to type 1 diabetes. These gene polymorphisms correlated with the degree of cellular islet autoimmunity in a cohort of individuals with type 1 diabetes. Finally, using fenofibrate, which activates sulfatide biosynthesis, we completely prevented diabetes in NOD mice and even reversed the disease in half of otherwise diabetic animals. These results indicate that islet sphingolipid metabolism is abnormal in type 1 diabetes and suggest that modulation may represent a novel therapeutic approach. The RNA expression data is available online at https://www.dropbox.com/s/93mk5tzl5fdyo6b/Abnormal%20islet%20sphingolipid%20metabolism%20in%20type%201%20diabetes%2C%20RNA%20expression.xlsx?dl=0 . A list of SNPs identified is available at https://www.dropbox.com/s/yfojma9xanpp2ju/Abnormal%20islet%20sphingolipid%20metabolism%20in%20type%201%20diabetes%20SNP.xlsx?dl=0 .
- Published
- 2017
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39. Mercurius solubilis attenuates scopolamine-induced memory deficits and enhances the motor coordination in mice
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Gurjit Singh, Simranjeet Kaur, ANUDEEP KAUR, Rajbir Bhatti, and Anudeep Kaur
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Male ,Scopolamine ,Morris water navigation task ,Arginine ,Guanidines ,Cholinergic Antagonists ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Picrates ,medicine ,Avoidance Learning ,Animals ,Enzyme Inhibitors ,Maze Learning ,Calcimycin ,Analysis of Variance ,Memory Disorders ,Dose-Response Relationship, Drug ,General Neuroscience ,Biphenyl Compounds ,Cognition ,General Medicine ,Mercury ,030205 complementary & alternative medicine ,Motor coordination ,Neuroprotective Agents ,Female ,Mercurius Solubilis ,Psychomotor Disorders ,Psychology ,Neuroscience ,030217 neurology & neurosurgery ,Cognitive psychology ,medicine.drug - Abstract
The present study was designed to investigate the effect of mercurius solubilis (merc sol) on scopolamine induced memory deficits and motor coordination in mice.Three different formulations of merc sol (30X, 200M, 1M) were screened for their in vitro antioxidant potential through DPPH (2, 2-diphenyl-1-picrylhydrazyl) and nitric oxide scavenging activity using response surface methodology. Memory impairment was induced by the administration of scopolamine (1mg/kg i.p.) for 3 days to mice and assessment of memory acquisition and retention was done using Morris water maze test, passive avoidance test, elevated plus maze test, light and dark box test, motor coordination was evaluated using rotarod test and inclined plan test. The involvement of ion channels and nitric oxide pathway in the observed effect of merc sol was elucidated by administration of veratrine (0.125 μg/kg, i.p.), A23187 (20 μg/kg, i.p.), L- arginine (40 mg/kg, i.p.), aminoguanidine (50 mg/kg, i.p.) 30 min prior to merc sol. Acute toxicity studies were performed in accordance with the OECD (Organisation for Economic Co-operation and Development) guidelines.In vitro studies have revealed merc sol 30 X to have maximum free radical and nitric oxide scavenging activity. Administration of merc sol 30 X to mice significantly reduced scopolamine induced memory deficits and motor incoordination in all the performance tasks. The calcium ionophore, A23187 significantly altered the effect of merc sol in mice. No major signs of toxicity were observed.Merc sol has antiamnesic effect in scopolamine induced deficits and motor coordination in mice.
- Published
- 2017
40. A technique for using short term soft liners as complete dentures final impression material
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Simranjeet Kaur, Kaushal Kishore Agarwal, Himanshi Aggarwal, Kamleshwar Singh, Saumyendra V. Singh, and Varun Baslas
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business.industry ,Computer science ,Short Communication ,medicine.medical_treatment ,Dentistry ,Tissue conditioners ,Soft liner ,Impression ,Term (time) ,Splints ,Otorhinolaryngology ,medicine ,Dentures ,business ,General Dentistry - Abstract
Tissue conditioners can be used to condition abused tissues, record functional impressions, make temporary relining for surgical splints and obturators, and for other clinical applications, mainly because of their specific viscoelasticity. Their function in complete denture fabrication is debatable but their use as a functional impression material has been proved. The present article describes a technique for using tissue conditioners as functional impression materials. Correct method of usage, manipulation, specific properties as impression materials and precautions in different situations for obtaining accurate impressions has been highlightened.
- Published
- 2014
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41. Biochemical and proteomic analysis reveals oxidative stress tolerance strategies of Scenedesmus abundans against allelochemicals released by Microcystis aeruginosa
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Akanksha Srivastava, Vaibhav Srivastava, Sanjiv Kumar, Amrik Singh Ahluwalia, Simranjeet Kaur, and Yogesh Mishra
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0301 basic medicine ,chemistry.chemical_classification ,biology ,Chemistry ,010501 environmental sciences ,Pentose phosphate pathway ,biology.organism_classification ,medicine.disease_cause ,Photosynthesis ,01 natural sciences ,03 medical and health sciences ,030104 developmental biology ,Enzyme ,Biochemistry ,Protein biosynthesis ,medicine ,Glycolysis ,Microcystis aeruginosa ,Agronomy and Crop Science ,Allelopathy ,Oxidative stress ,0105 earth and related environmental sciences - Abstract
We studied the possible survival strategies of a green alga, Scenedesmus abundans, against allelochemicals secreted by Microcystis aeruginosa. We exposed the monoculture of S. abundans to a cell free-filtrate (allelochemicals) of M. aeruginosa at the start of our experiment and measured the growth behaviour, morphological changes and oxidative stress markers. The results suggest that exposure to allelochemicals induced oxidative stress in S. abundans, which had significantly reduced the growth of green alga with certain morphological changes. However, after seven days, S. abundans found ways to reduce oxidative stress by recovering its morphology and growth close to that of control. To understand possible survival strategies of test alga, we measured biochemical as well as protein level changes in S. abundans. Biochemical response of the green alga clearly showed that as a response to allelochemicals, enzymatic and non-enzymatic antioxidants were induced. Proteomic analysis showed that exposure to allelochemicals induced accumulation of 13 proteins on the 2-DE gel of S. abundans, which falls in three functional categories, i.e., (i) energy metabolism (photosynthesis, carbon fixation and respiration), (ii) ROS scavenging enzymes and molecular chaperones, and (iii) amino acid and protein biosynthesis. After chronic oxidative stress, these proteins presumably retained glycolysis, pentose phosphate pathway and turnover rate of the Calvin-Benson cycle. Moreover, these proteins assisted in the adequate detoxification of ROS and played an important role in the damage removal and repair of oxidized proteins, lipids and nucleic acids. Therefore, our study anticipates that S. abundans embraces biochemical and proteomic reprogramming to thrives against allelochemicals released by M. aeruginosa.
- Published
- 2019
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42. Tu1766 – Dysregulated Lncrnas in Inflammatory Bowel Disease Demonstrate Immune System Related Association Through Guilt-By Association Analysis
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Reza Yarani, Flemming Pociot, Aashiq H. Mirza, and Simranjeet Kaur
- Subjects
Immune system ,Hepatology ,business.industry ,Association (object-oriented programming) ,Immunology ,Gastroenterology ,medicine ,medicine.disease ,business ,Guilt by association ,Inflammatory bowel disease - Published
- 2019
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43. Circulating microRNA levels predict residual beta cell function and glycaemic control in children with type 1 diabetes mellitus
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Siri Fredheim, Flemming Pociot, Lotte B Nielsen, Simranjeet Kaur, Aashiq H. Mirza, Henrik B. Mortensen, Nasim Samandari, and Philip Hougaard
- Subjects
0301 basic medicine ,Oncology ,Blood Glucose ,Male ,medicine.medical_specialty ,Angiogenesis ,Endocrinology, Diabetes and Metabolism ,Beta-cell Function ,03 medical and health sciences ,Internal medicine ,Insulin-Secreting Cells ,microRNA ,Internal Medicine ,Journal Article ,Medicine ,Humans ,Prospective Studies ,Prospective cohort study ,Type 1 diabetes ,business.industry ,Infant, Newborn ,Infant ,medicine.disease ,body regions ,Circulating MicroRNA ,MicroRNAs ,030104 developmental biology ,Endocrinology ,Diabetes Mellitus, Type 1 ,Hormone receptor ,Child, Preschool ,embryonic structures ,Cohort ,Female ,business - Abstract
Aims/hypothesis: We aimed to identify circulating microRNA (miRNA) that predicts clinical progression in a cohort of 123 children with new-onset type 1 diabetes mellitus. Methods: Plasma samples were prospectively obtained at 1, 3, 6, 12 and 60 months after diagnosis from a subset of 40 children from the Danish Remission Phase Cohort, and profiled for miRNAs. At the same time points, meal-stimulated C-peptide and HbA 1c levels were measured and insulin-dose adjusted HbA 1c (IDAA 1c) calculated. miRNAs that at 3 months after diagnosis predicted residual beta cell function and glycaemic control in this subgroup were further validated in the remaining cohort (n = 83). Statistical analysis of miRNA prediction for disease progression was performed by multiple linear regression analysis adjusted for age and sex. Results: In the discovery analysis, six miRNAs (hsa-miR-24-3p, hsa-miR-146a-5p, hsa-miR-194-5p, hsa-miR-197-3p, hsa-miR-301a-3p and hsa-miR-375) at 3 months correlated with residual beta cell function 6–12 months after diagnosis. Stimulated C-peptide at 12 months was predicted by hsa-miR-197-3p at 3 months (p = 0.034). A doubling of this miRNA level corresponded to a sixfold higher stimulated C-peptide level. In addition, a doubling of hsa-miR-24-3p and hsa-miR-146a-5p levels at 3 months corresponded to a 4.2% (p < 0.014) and 3.5% (p < 0.022) lower IDAA 1c value at 12 months. Analysis of the remaining cohort confirmed the initial finding for hsa-miR-197-3p (p = 0.018). The target genes for the six miRNAs revealed significant enrichment for pathways related to gonadotropin-releasing hormone receptor and angiogenesis pathways. Conclusions/interpretation: The miRNA hsa-miR-197-3p at 3 months was the strongest predictor of residual beta cell function 1 year after diagnosis in children with type 1 diabetes mellitus.
- Published
- 2017
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44. Comparative evaluation of various endodontic irrigants on apical extrusion of debris
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Simranjeet Kaur and Sameer Makkar
- Subjects
business.industry ,Root canal ,Chlorhexidine ,flare ups ,Smear layer ,Dentistry ,Ocean Engineering ,Debris ,smear layer ,Comparative evaluation ,lcsh:RK1-715 ,chemistry.chemical_compound ,medicine.anatomical_structure ,chemistry ,Sodium hypochlorite ,lcsh:Dentistry ,medicine ,apically extruded debris (AED) ,Apical extrusion ,Apical foramen ,business ,irrigants ,medicine.drug - Abstract
Introduction. All techniques and instruments used to clean and shape canals produce some amount of apically extruded debris. The type of irrigant can affect the amount of apically extruded debris. The aim of the present study was to quantitatively compare the amount of debris extruded apically from root canals when three different irrigants were used during canal preparation with hand instruments. Material and Methods. Twenty extracted single-rooted human mandibular premolars with straight root canals were used. The teeth were randomly divided into 4 groups based on the irrigant used: Group 1: Biopure MTAD (Dentsply), Group 2: 3% NaOCl (Prima Dentalproducts), Group 3: 2% Chlorhexidine (Vishal Industries, Gujarat), Group 4: Control (no irrigation). Debris extruded through apical foramen during root canal preparation was collected into pre weighed empty guttapercha tubes. The weight of dry extruded debris was calculated by subtracting the preinstrumentation and postinstrumentation weight for each group. Obtained data was analyzed using one-way analysis of variance and Tukey test. Results. Group 2 (3% sodium hypochlorite) had the greatest amount of extruded debris which was significantly different from other groups (p
- Published
- 2013
45. Metabolomic Biomarkers in the Progression to Type 1 Diabetes
- Author
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Anne Julie Overgaard, Flemming Pociot, and Simranjeet Kaur
- Subjects
0301 basic medicine ,medicine.medical_specialty ,Endocrinology, Diabetes and Metabolism ,Physiology ,Autoimmunity ,medicine.disease_cause ,03 medical and health sciences ,chemistry.chemical_compound ,Metabolomics ,Methionine ,Diabetes mellitus ,Internal medicine ,Internal Medicine ,medicine ,Metabolome ,Humans ,Microbiome ,Seroconversion ,Triglycerides ,Type 1 diabetes ,business.industry ,medicine.disease ,030104 developmental biology ,Endocrinology ,Diabetes Mellitus, Type 1 ,chemistry ,Disease Progression ,business ,Biomarkers - Abstract
Metabolomics is the snapshot of all detectable metabolites and lipids in biological materials and has potential in reflecting genetic and environmental factors contributing to the development of complex diseases, such as type 1 diabetes. The progression to seroconversion to development of type 1 diabetes has been studied using this technique, although in relatively small cohorts and at limited time points. Overall, three observations have been consistently reported; phospholipids at birth are lower in children developing type 1 diabetes early in childhood, methionine levels are lower in children at seroconversion, and triglycerides are increased at seroconversion and associated to microbiome diversity, indicating an association between the metabolome and microbiome in type 1 diabetes progression.
- Published
- 2016
46. Alternate mild drought stress (−0.1 MPa PEG) immunizes sensitive chickpea cultivar against lethal chilling by accentuating the defense mechanisms
- Author
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Harsh Nayyar, Ankur Jairath, Simranjeet Kaur, Inderjeet Singh, and Sanjeev Kumar
- Subjects
0106 biological sciences ,0301 basic medicine ,Physiology ,Cellular respiration ,Plant Science ,Biology ,medicine.disease_cause ,01 natural sciences ,Lipid peroxidation ,03 medical and health sciences ,chemistry.chemical_compound ,Respiration ,Botany ,medicine ,Cultivar ,Proline ,fungi ,food and beverages ,Plant physiology ,Horticulture ,030104 developmental biology ,chemistry ,Shoot ,Agronomy and Crop Science ,Oxidative stress ,010606 plant biology & botany - Abstract
The changes in climate particularly, the rise in temperature and humidity affect the physiological functions of plants subsequently affecting crop productivity adversely. A strategy is required which can be directly implemented in fields to induce the tolerance in crop plants. In present study, two chickpea varieties with contrasting sensitivity PDG3 (Tolerant) and GPF2 (Sensitive) were raised hydroponically, preconditioned with mild drought stress (0.1 MPa PEG-6000) for 3 days (above 0.1 MPa is lethal) and subsequently recovered for double time (6 days) and finally exposed to lethal cold stress (4 °C) for 3 days. We hypothesize that preconditioning with non-lethal drought stress may immunize the plants to combat lethal cold stress. Membrane integrity improved in root and shoot, lipid peroxidation decreased to control level in preconditioned seedlings. Cellular respiration ability (% TTC reduction) increased in the preconditioned seedlings to almost 90 % in the shoot and 60 % in the root, concurrently it was 45 % in non-preconditioned seedlings. Proline content also increased in preconditioned seedlings, especially roots. Carbohydrate had a shift in terms of a high amount of total, reducing sugars and starch in non-preconditioned seedlings compared to preconditioned. Both PDG3 and GPF2 showed enhanced SOD, CAT and GPOX activity indicating tolerance against cold-induced oxidative stress and preconditioning induced improvement against lethal cold stress.
- Published
- 2016
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47. Influence of different solvents in extraction of phenolic compounds from vegetable residues and their evaluation as natural sources of antioxidants
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Harinder Singh Oberoi, Neha Babbar, Vinod Kumar Bhargav, and Simranjeet Kaur Sandhu
- Subjects
Antioxidant ,Chloroform ,DPPH ,medicine.medical_treatment ,Extraction (chemistry) ,Ethyl acetate ,Hexane ,chemistry.chemical_compound ,Nutraceutical ,chemistry ,medicine ,Organic chemistry ,Original Article ,Methanol ,Food science ,Food Science - Abstract
Dried residues from four different vegetables, viz. pea pod (pp), cauliflower waste (CW), potato peel (PP) and tomato peel (TP) were extracted using four solvents i.e., hexane, chloroform, ethyl acetate and methanol. Among the four solvents, methanolic extracts showed the highest total phenolic content (TPC) for all the four vegetable residues. Methanolic extracts were evaluated for antioxidant activities using diphenylpicryl-hydrazyl (DPPH) and reducing power assay. Tomato peel extract showed highest phenolic content of 21.0 mg GAE/g-dw and 80.8 % DPPH free radical scavenging ability, whereas potato peel extract had a low phenolic content, and it also showed the least antioxidant activity among the residues examined in this study. Total phenolic content and DPPH free radical scavenging activity in pea pods and cauliflower waste were 13.6 mg GAE/g-dw and 72 % and 9.2 mg GAE/g-dw and 70.7 %, respectively. The coefficient of determination (r(2)) for correlation between TPC and reducing power, DPPH and TPC, DPPH and reducing power for all extracts was 0.85, 0.91and 0.87, respectively, suggesting an important role of phenolics in imparting antioxidant ability. Extracts from vegetables residues therefore represent a significant source of phenolic antioxidants for use as nutraceuticals or biopreservatives.
- Published
- 2012
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48. Molecular aspects of metal oxide nanoparticle (MO-NPs) mediated pharmacological effects
- Author
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Simranjeet Kaur Bedi, Hardeep Singh Tuli, Pardeep Kumar, Sardul Singh Sandhu, Gaurav Kumar, and Dharambir Kashyap
- Subjects
Cell signaling ,Angiogenesis ,medicine.drug_class ,Metal Nanoparticles ,Inflammation ,Pharmacology ,General Biochemistry, Genetics and Molecular Biology ,Anti-inflammatory ,Metastasis ,Neoplasms ,medicine ,Animals ,Humans ,General Pharmacology, Toxicology and Pharmaceutics ,health care economics and organizations ,Chemistry ,technology, industry, and agriculture ,Cancer ,Oxides ,General Medicine ,medicine.disease ,Antimicrobial ,Bioavailability ,Treatment Outcome ,Metals ,medicine.symptom - Abstract
Metal oxide nanoparticles (MO-NPs) are the multidisciplinary nano-scaled molecules which are being used in the diagnosis and treatment of the challenging diseases including cancer. Evidence suggest that antimicrobial formulations in the form of MO-NPs can be possibly used as effective antimicrobial agents. In addition, MO-NPs are known to target various cellular signaling pathways associated with apoptosis, angiogenesis, metastasis and inflammation of cancer. In combination with other chemotherapeutic/anticancer agents, MO-NPs not only increase their bioavailability and efficacy but also lower down the requirement of active dosages. To date, to our knowledge there is no single comprehensive report on cellular and molecular interactions of MO-NPs which have been well elaborated in this review. Also we highlight various action mechanisms through which MO-NPs act as antimicrobial, anticancer, antioxidant and anti-inflammatory agents.
- Published
- 2015
49. Snoring: an annoyance or a serious health problem (obstructive sleep apnea)?
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Varun Baslas, Pooran Chand, Pradeep Kumar, Simranjeet Kaur, and Himanshi Aggarwal
- Subjects
Obstructive sleep apnea ,medicine.medical_specialty ,business.industry ,lcsh:Public aspects of medicine ,Public Health, Environmental and Occupational Health ,Medicine ,Annoyance ,lcsh:RA1-1270 ,Audiology ,business ,medicine.disease ,Letters to Editor - Published
- 2015
50. Elevated levels of mannan-binding leptin (MBL) and eosinophilia in patients of bronchial asthma with allergic rhinitis and allergic bronchopulmonary aspergillosis associate with a novel intronic polymorphism in MBL
- Author
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P. U. Sarma, Taruna Madan, Simranjeet Kaur, Ashok Shah, Steffen Thiel, and Vijay Kumar Gupta
- Subjects
Adult ,Allergy ,Adolescent ,Genotype ,Immunology ,chemical and pharmacologic phenomena ,Single-nucleotide polymorphism ,Aspergillosis ,Mannose-Binding Lectin ,Polymerase Chain Reaction ,Polymorphism, Single Nucleotide ,Forced Expiratory Volume ,Clinical Studies ,Eosinophilia ,Respiratory Hypersensitivity ,medicine ,Humans ,Immunology and Allergy ,Child ,Rhinitis ,Mannan-binding lectin ,Asthma ,business.industry ,Aspergillosis, Allergic Bronchopulmonary ,Mannan binding ,Exons ,Middle Aged ,bacterial infections and mycoses ,medicine.disease ,Introns ,Miscellaneous ,Case-Control Studies ,Allergic bronchopulmonary aspergillosis ,medicine.symptom ,business - Abstract
SummaryMannan-binding lectin (MBL), an important component of innate immunity, binds to a range of foreign antigens and initiates the lectin complement pathway. Earlier studies have reported high plasma MBL levels in allergic patients in comparison to healthy controls. In view of varied plasma MBL levels being determined by genetic polymorphisms in its collagen region, we investigated the association of single nucleotide polymorphisms (SNPs) in the collagen region of human MBL with respiratory allergic diseases. The study groups comprised patients of bronchial asthma with allergic rhinitis (n = 49) and allergic bronchopulmonary aspergillosis (APBA) (n = 11) and unrelated age-matched healthy controls of Indian origin (n = 84). A novel intronic SNP, G1011A of MBL, showed a significant association with both the patient groups in comparison to the controls (P
- Published
- 2006
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