102 results on '"Xue Cai"'
Search Results
2. Four-year changes in central fatness, risk of diabetes, and metabolic control in older adults: a cohort study with mediation analysis
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Xue Cai, Dan Luo, Shuling Liu, Ruxue Li, Yanhui Lu, Mingzi Li, and Shanhu Qiu
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aged ,obesity ,follow-up studies ,insulin resistance ,mediation analysis ,Medicine - Abstract
Background/Aims Older adults are vulnerable to central obesity, while the association of changes in central fatness with risk of diabetes and metabolic control has not been investigated among this particular population. This study was aimed to address these issues. Methods A total of 1,815 adults aged ≥ 60 years without diabetes at baseline were followed for 4 years. Incident diabetes was ascertained based on plasma glucose, hemoglobin A1c, medical history, and/or the use of anti-diabetic drugs. Central fatness was assessed by waist circumference (WC), waist-height ratio (WHtR), and body roundness index (BRI). Logistic regression analyses were used to assess the association of changes in central fatness with risk of diabetes, along with dose-response and mediation analyses. Results During the 4-year follow-up, 177 participants developed diabetes. The risk of diabetes was increased by 42%, 41%, and 40% per 1 standard deviation increases in WC, WHtR, and BRI, respectively, in multivariable-adjusted models (all p < 0.01). Moreover, these relationships were all linearly-shaped (all pnonlinearity ≥ 0.11). Increases in WC, WHtR, and BRI correlated with increases in hemoglobin A1c, triglycerides-and-glucose index, triglycerides, white blood cell, and C-reactive protein (all p ≤ 0.04). Yet only changes in hemoglobin A1c and triglycerides-and-glucose index were identified as the possible mediators for risk of diabetes, with their mediating effect being about 35% and 21%, respectively. Conclusions Increases in central fatness were related to elevated risk of diabetes, and this association might be partly explained by the worsening of glycemic control and insulin resistance in older adults.
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- 2022
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3. Impact of walking on glycemic control and other cardiovascular risk factors in type 2 diabetes: a meta-analysis.
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Shanhu Qiu, Xue Cai, Uwe Schumann, Martina Velders, Zilin Sun, and Jürgen Michael Steinacker
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Medicine ,Science - Abstract
BACKGROUND: Walking is the most popular and most preferred exercise among type 2 diabetes patients, yet compelling evidence regarding its beneficial effects on cardiovascular risk factors is still lacking. The aim of this meta-analysis of randomized controlled trials (RCTs) was to evaluate the association between walking and glycemic control and other cardiovascular risk factors in type 2 diabetes patients. METHODS: Three databases were searched up to August 2014. English-language RCTs were eligible for inclusion if they had assessed the walking effects (duration ≥8 weeks) on glycemic control or other cardiovascular risk factors among type 2 diabetes patients. Data were pooled using a random-effects model. Subgroup analyses based on supervision status and meta-regression analyses of variables regarding characteristics of participants and walking were performed to investigate their association with glycemic control. RESULTS: Eighteen studies involving 20 RCTs (866 participants) were included. Walking significantly decreased glycosylated haemoglobin A1c (HbA1c) by 0.50% (95% confidence intervals [CI]: -0.78% to -0.21%). Supervised walking was associated with a pronounced decrease in HbA1c (WMD -0.58%, 95% CI: -0.93% to -0.23%), whereas non-supervised walking was not. Further subgroup analysis suggested non-supervised walking using motivational strategies is also effective in decreasing HbA1c (WMD -0.53%, 95% CI: -1.05% to -0.02%). Effects of covariates on HbA1c change were generally unclear. For other cardiovascular risk factors, walking significantly reduced body mass index (BMI) and lowered diastolic blood pressure (DBP), but non-significantly lowered systolic blood pressure (SBP), or changed high-density or low-density lipoprotein cholesterol levels. CONCLUSIONS: This meta-analysis supports that walking decreases HbA1c among type 2 diabetes patients. Supervision or the use of motivational strategies should be suggested when prescribed walking to ensure optimal glycemic control. Walking also reduces BMI and lowers DBP, however, it remains insufficient regarding the association of walking with lowered SBP or improved lipoprotein profiles. TRIAL REGISTRATION: PROSPERO CRD42014009515.
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- 2014
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4. Contrast enhanced micro-computed tomography resolves the 3-dimensional morphology of the cardiac conduction system in mammalian hearts.
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Robert S Stephenson, Mark R Boyett, George Hart, Theodora Nikolaidou, Xue Cai, Antonio F Corno, Nelson Alphonso, Nathan Jeffery, and Jonathan C Jarvis
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Medicine ,Science - Abstract
The general anatomy of the cardiac conduction system (CCS) has been known for 100 years, but its complex and irregular three-dimensional (3D) geometry is not so well understood. This is largely because the conducting tissue is not distinct from the surrounding tissue by dissection. The best descriptions of its anatomy come from studies based on serial sectioning of samples taken from the appropriate areas of the heart. Low X-ray attenuation has formerly ruled out micro-computed tomography (micro-CT) as a modality to resolve internal structures of soft tissue, but incorporation of iodine, which has a high molecular weight, into those tissues enhances the differential attenuation of X-rays and allows visualisation of fine detail in embryos and skeletal muscle. Here, with the use of a iodine based contrast agent (I(2)KI), we present contrast enhanced micro-CT images of cardiac tissue from rat and rabbit in which the three major subdivisions of the CCS can be differentiated from the surrounding contractile myocardium and visualised in 3D. Structures identified include the sinoatrial node (SAN) and the atrioventricular conduction axis: the penetrating bundle, His bundle, the bundle branches and the Purkinje network. Although the current findings are consistent with existing anatomical representations, the representations shown here offer superior resolution and are the first 3D representations of the CCS within a single intact mammalian heart.
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- 2012
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5. Correction: Contrast Enhanced Micro-Computed Tomography Resolves the 3-Dimensional Morphology of the Cardiac Conduction System in Mammalian Hearts.
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Robert S. Stephenson, Mark R. Boyett, George Hart, Theodora Nikolaidou, Xue Cai, Antonio F. Corno, Nelson Alphonso, Nathan Jeffery, and Jonathan C. Jarvis
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Medicine ,Science - Published
- 2012
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6. A partial structural and functional rescue of a retinitis pigmentosa model with compacted DNA nanoparticles.
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Xue Cai, Zack Nash, Shannon M Conley, Steven J Fliesler, Mark J Cooper, and Muna I Naash
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Medicine ,Science - Abstract
Previously we have shown that compacted DNA nanoparticles can drive high levels of transgene expression after subretinal injection in the mouse eye. Here we delivered compacted DNA nanoparticles containing a therapeutic gene to the retinas of a mouse model of retinitis pigmentosa. Nanoparticles containing the wild-type retinal degeneration slow (Rds) gene were injected into the subretinal space of rds(+/-) mice on postnatal day 5. Gene expression was sustained for up to four months at levels up to four times higher than in controls injected with saline or naked DNA. The nanoparticles were taken up into virtually all photoreceptors and mediated significant structural and biochemical rescue of the disease without histological or functional evidence of toxicity. Electroretinogram recordings showed that nanoparticle-mediated gene transfer restored cone function to a near-normal level in contrast to transfer of naked plasmid DNA. Rod function was also improved. These findings demonstrate that compacted DNA nanoparticles represent a viable option for development of gene-based interventions for ocular diseases and obviate major barriers commonly encountered with non-viral based therapies.
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- 2009
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7. Proteomics profiling of colorectal cancer progression identifies PLOD2 as a potential therapeutic target
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Jiani Chen, Ting Chen, Lifeng Sun, Tiannan Guo, Xi Zheng, Huanhuan Gao, Shaozhi Dai, Xingyue Weng, Kailun Xu, Biting Zhou, Wei Liu, Lin Wang, Lina Qi, Yaoting Sun, Lirong Chen, Jinfan Li, Zhiyuan Hu, Xiuli Zhang, Jian Wang, Jimin Shao, Xiaoming Xu, Tiansheng Zhu, Yingkuan Shao, Yi Zhu, Wangxiong Hu, Xue Cai, Xueping Xiang, Guan Ruan, Shaojun Yu, Dan Li, and Shu Zheng
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Proteomics ,Cancer Research ,business.industry ,Colorectal cancer ,Procollagen-Lysine, 2-Oxoglutarate 5-Dioxygenase ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Computational biology ,medicine.disease ,Oncology ,Cell Movement ,Medicine ,Profiling (information science) ,Humans ,business ,Colorectal Neoplasms ,RC254-282 - Published
- 2022
8. The nudge strategies for weight loss in adults with obesity and overweight: A systematic review and meta-analysis
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Xue Cai, Hua Jiang, Wuai Zhou, Dan Luo, Tianxue Long, Ruxue Li, Huijing Zhang, Yating Zhang, and Mingzi Li
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Adult ,education.field_of_study ,medicine.medical_specialty ,Waist ,Nudge theory ,business.industry ,Health Policy ,Body Weight ,Population ,Overweight ,medicine.disease ,Obesity ,Body Mass Index ,Weight loss ,Meta-analysis ,Weight Loss ,Physical therapy ,Humans ,Medicine ,medicine.symptom ,business ,education ,Body mass index - Abstract
Obesity and overweight conditions have become major health challenges worldwide. The exploration of effective weight loss strategies is essential. Nudges are currently advancing approaches that represent a new and better method for changing the behaviors of people. However, the effectiveness of nudge interventions on weight loss in overweight people who may be obese has not been synthesized in a systematic manner. In this study, a systematic literature search was performed. Only randomized controlled trials (RCTs) were considered. Weighted mean differences (WMDs) and 95% confidence intervals (CIs) were calculated as summary statistics. In total, 25 RCTs involving a population of 5,929 individuals were included. Significant effects of the nudge strategy on weight loss (WMD: -0.96 kg, 95% CI: -1.49 to -0.43), body mass index (WMD: -0.3 kg/m2, 95% CI: -0.41 to -0.19) and waist circumference (WMD: -0.75 cm, 95% CI: -1.23 to -0.27) were observed. The subgroup analysis showed that the reduction in body weight associated with nudge interventions was significant in younger and more obese people. Moreover, the effect of nudge intervention on weight loss weakened over time. Overall, the nudge strategy can promote changes in weight loss, body mass index and waist circumference of adults, albeit at a mild magnitude and in particular types of individuals. Nudge strategies can be recommended to clinical practitioners and policy-makers to promote obesity management.
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- 2021
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9. Regulation of sinus node pacemaking and atrioventricular node conduction by HCN channels in health and disease
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Sunil Jit R.J. Logantha, James O. Tellez, Mark R. Boyett, Eman S.H. Abd Allah, Cali Anderson, P. Mesirca, Natalie Chandler, Matthew K. Lancaster, Matteo E. Mangoni, Joseph Yanni, George Hart, Jonathan P. Ariyaratnam, Matthew Smith, Henggui Zhang, Robert S. Stephenson, Luke Stuart, Gwilym M. Morris, Claire Wilson, Xue Cai, Rudi Billeter, Alicia D'Souza, Annalisa Bucchi, Sandra C. Jones, Oliver J. Monfredi, Carol T. Bussey, Shu Nakao, and IT University of Copenhagen
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Cardiac arrhythmias ,Biophysics ,Action Potentials ,Heart failure ,Disease ,030204 cardiovascular system & hematology ,03 medical and health sciences ,0302 clinical medicine ,[SDV.MHEP.CSC]Life Sciences [q-bio]/Human health and pathology/Cardiology and cardiovascular system ,Heart Rate ,Atrial Fibrillation ,medicine ,Humans ,Circadian rhythm ,Cardiac conduction system ,Molecular Biology ,Transcription factor ,ComputingMilieux_MISCELLANEOUS ,Sinoatrial Node ,030304 developmental biology ,0303 health sciences ,business.industry ,Atrial fibrillation ,medicine.disease ,Atrioventricular node ,Athletic training ,Ageing ,Autonomic nervous system ,medicine.anatomical_structure ,Atrioventricular Node ,Electrical conduction system of the heart ,business ,Neuroscience - Abstract
The funny current, I f, was first recorded in the heart 40 or more years ago by Dario DiFrancesco and others. Since then, we have learnt that I f plays an important role in pacemaking in the sinus node, the innate pacemaker of the heart, and more recently evidence has accumulated to show that I f may play an important role in action potential conduction through the atrioventricular (AV) node. Evidence has also accumulated to show that regulation of the transcription and translation of the underlying Hcn genes plays an important role in the regulation of sinus node pacemaking and AV node conduction under normal physiological conditions - in athletes, during the circadian rhythm, in pregnancy, and during postnatal development - as well as pathological states - ageing, heart failure, pulmonary hypertension, diabetes and atrial fibrillation. There may be yet more pathological conditions involving changes in the expression of the Hcn genes. Here, we review the role of I f and the underlying HCN channels in physiological and pathological changes of the sinus and AV nodes and we begin to explore the signalling pathways (microRNAs, transcription factors, GIRK4, the autonomic nervous system and inflammation) involved in this regulation. This review is dedicated to Dario DiFrancesco on his retirement.
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- 2021
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10. Gut microbiota, inflammation, and molecular signatures of host response to infection
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Yuanqing Fu, Xiao Yi, Congmei Xiao, Haihong Zhao, Fengzhe Xu, Bo Shen, Yu-ming Chen, Zelei Miao, Xue Cai, Hao Chen, Geng-dong Chen, Yi Zhu, Wenhua Ling, Tiannan Guo, Ju-Sheng Zheng, Menglei Shuai, Liang Yue, Jun Wang, Xiaomai Wu, Wanglong Gou, Zengliang Jiang, and Mian-li Xiao
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Proteomics ,Inflammation ,Biology ,Gut flora ,digestive system ,Proinflammatory cytokine ,03 medical and health sciences ,0302 clinical medicine ,Immune system ,Metabolomics ,Genetics ,medicine ,Humans ,Molecular Biology ,Feces ,030304 developmental biology ,0303 health sciences ,Host (biology) ,COVID-19 ,biology.organism_classification ,Gastrointestinal Microbiome ,Immunology ,Dysbiosis ,medicine.symptom ,030217 neurology & neurosurgery ,Function (biology) - Abstract
Gut microbial dysbiosis has been linked to many noncommunicable diseases. However, little is known about specific gut microbiota composition and its correlated metabolites associated with molecular signatures underlying host response to infection. Here, we describe the construction of a proteomic risk score based on 20 blood proteomic biomarkers, which have recently been identified as molecular signatures predicting the progression of the COVID-19. We demonstrate that in our cohort of 990 healthy individuals without infection, this proteomic risk score is positively associated with proinflammatory cytokines mainly among older, but not younger, individuals. We further discover that a core set of gut microbiota can accurately predict the above proteomic biomarkers among 301 individuals using a machine learning model and that these gut microbiota features are highly correlated with proinflammatory cytokines in another independent set of 366 individuals. Fecal metabolomics analysis suggests potential amino acid-related pathways linking gut microbiota to host metabolism and inflammation. Overall, our multi-omics analyses suggest that gut microbiota composition and function are closely related to inflammation and molecular signatures of host response to infection among healthy individuals. These results may provide novel insights into the cross-talk between gut microbiota and host immune system.
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- 2021
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11. Improvement of cordycepin production by an isolated Paecilomyces hepiali mutant from combinatorial mutation breeding and medium screening
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Bo Zhang, Yu-Guo Zheng, Jie-Yi Jin, Zhiqiang Liu, and Xue Cai
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Mutant ,Bioengineering ,chemistry.chemical_compound ,medicine ,Food science ,Phylogeny ,Cordyceps ,Mutation breeding ,Deoxyadenosines ,biology ,Cordycepin ,Strain (chemistry) ,Chemistry ,General Medicine ,Paecilomyces hepiali ,biology.organism_classification ,Bioproduction ,Bioactive compound ,Culture Media ,medicine.drug_formulation_ingredient ,Fermentation ,Mutation ,Microscopy, Electron, Scanning ,Paecilomyces ,Biotechnology - Abstract
Cordycepin is a major bioactive compound found in Cordyceps sinensis that exhibits a broad spectrum of biological activities. Here a Paecilomyces hepiali OR-1 strain was initially isolated from plateau soil for the bioproduction of cordycepin. Subsequently, strain modification including 60Co γ-ray and ultraviolet irradiation were employed to increase the cordycepin titer, resulted in a high-yield mutant strain P. hepiali ZJB18001 with the cordycepin content of 0.61 mg/gDCW, showing a 2.3-fold to that from the wild strain (0.26 mg/gDCW). Furthermore, medium screening based on Box-Behnken design and the response surface methodology facilitated the enhancement of cordycepin yield to the value of 0.96 mg/gDCW at 25 °C for 5 days in submerged cultivation with an optimized medium composition. The high cordycepin yield, rapid growth rate and stable genetic characteristics of P. hepiali ZJB18001 are beneficial in terms of costs and time for the industrialization of cordycepin production.
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- 2021
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12. Physical confinement during cancer cell migration triggers therapeutic resistance and cancer stem cell-like behavior
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Michelle Zalles, Emily Hills, Xue Cai, Anish Babu, Qionghua Shen, James Battiste, Rami Barakat, Patrick McKernan, Tamara Hill, Turki I. Almugaiteeb, Loan Bui, and Young Tae Kim
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0301 basic medicine ,Cancer Research ,Cell Cycle Proteins ,Article ,Metastasis ,03 medical and health sciences ,0302 clinical medicine ,Cell Movement ,Cancer stem cell ,Cell Line, Tumor ,medicine ,Humans ,Cytoskeleton ,Cell Proliferation ,business.industry ,Cancer ,Therapeutic resistance ,medicine.disease ,Cell nucleus ,030104 developmental biology ,medicine.anatomical_structure ,Oncology ,Drug Resistance, Neoplasm ,030220 oncology & carcinogenesis ,Cancer cell ,Neoplastic Stem Cells ,Cancer research ,Efflux ,Glioblastoma ,business ,Transcription Factors - Abstract
Metastasized cancer cells have an increased resistance to therapies leading to a drastic decrease in patient survival rates. However, our understanding of the cause for this enhanced resistance is lacking. In this study, we report that physically tight confinement during cancer cell migration triggers therapeutic resistance and induces cancer stem cell-like behavior including up-regulation in efflux proteins and in cancer stem cell related markers. Moreover, the re-localization of Yes-associated protein (YAP) to the cell nucleus indicated an elevated level of cytoskeletal tension. The increased cytoskeletal tension suggested that mechanical interactions between cancer cells and tight surroundings during metastasis is one of the factors that contributes to therapeutic resistance and acquisition of cancer stem cell (CSC) like features. With this system and supporting data, we are able to study cells with therapeutic resistance and CSC-like properties for the future purpose of developing new strategies for the treatment of metastatic cancer.
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- 2021
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13. Does objectively measured light-intensity physical activity reduce the risk of cardiovascular mortality? A meta-analysis
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Xue Cai, Uwe Schumann, Jürgen M. Steinacker, Lijing Jia, Zilin Sun, Janine Wendt, Shanhu Qiu, and Tongzhi Wu
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Male ,medicine.medical_specialty ,Population ,030204 cardiovascular system & hematology ,Metabolic equivalent ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,medicine ,Humans ,Prospective Studies ,030212 general & internal medicine ,education ,Prospective cohort study ,Exercise ,Proportional Hazards Models ,education.field_of_study ,business.industry ,Health Policy ,Hazard ratio ,Cardiorespiratory fitness ,Confidence interval ,Light intensity ,Cardiovascular Diseases ,Female ,Sedentary Behavior ,Cardiology and Cardiovascular Medicine ,business ,Cohort study - Abstract
Aims Current physical activity guidelines emphasize little on light-intensity physical activity (LPA) in terms of reducing the risk of cardiovascular mortality. This meta-analysis aimed to bridge this gap by assessing their association using objectively measured LPA data. Methods and results Databases of PubMed and Scopus were searched to April 2020 for prospective cohort studies that reported the association of LPA assessed by activity monitors with the risk of cardiovascular mortality in the general population. Multivariable-adjusted hazard ratios (HRs) with 95% confidence intervals (CIs) were pooled using a random-effects model. Dose–response and subgroup analyses were also performed. Six cohort studies with seven datasets enrolling 13 960 participants were included. LPA was all measured by accelerometers. The HR of LPA per 30 min/day for cardiovascular mortality was pooled to be 0.80 (95% CI 0.67–0.96). This association was non-linearly shaped (Pnonlinearity < 0.01) and unaffected by sex difference. Moreover, substituting LPA for sedentary time of 30 min/day lowered the risk of cardiovascular mortality by 16% (95% CI 0.73–0.96). Results showed further that LPA was inferior to moderate-to-vigorous physical activity in reducing the risk of cardiovascular mortality when performed with an equal time-length set at 30 min/day (HR 0.83 vs. 0.54, Pcomparison = 0.046), but became comparable if at an equal activity-amount set at 150 metabolic equivalents-min/day (HR 0.67 vs. 0.54, Pcomparison = 0.41). Conclusion LPA shows potential in reducing the risk of cardiovascular mortality, and interventions targeting at LPA improvement are worth being encouraged.
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- 2020
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14. Metal–Organic Frameworks with Enhanced Photodynamic Therapy: Synthesis, Erythrocyte Membrane Camouflage, and Aptamer-Targeted Aggregation
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Renjun Pei, Jine Wang, Haiyin Lv, Yuewu Zhao, Pi Ding, and Xue Cai
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Porphyrins ,Materials science ,medicine.medical_treatment ,Aptamer ,Radical ,Apoptosis ,Photodynamic therapy ,02 engineering and technology ,010402 general chemistry ,Ferric Compounds ,01 natural sciences ,Nanomaterials ,Mice ,Necrosis ,chemistry.chemical_compound ,Cell Line, Tumor ,Neoplasms ,medicine ,Animals ,Molecule ,General Materials Science ,Metal-Organic Frameworks ,Photosensitizing Agents ,Singlet oxygen ,Erythrocyte Membrane ,fungi ,Aptamers, Nucleotide ,021001 nanoscience & nanotechnology ,Porphyrin ,Combinatorial chemistry ,0104 chemical sciences ,Oligodeoxyribonucleotides ,Photochemotherapy ,chemistry ,Nanoparticles ,Metal-organic framework ,Reactive Oxygen Species ,0210 nano-technology - Abstract
Here, ferric oxide-loaded metal-organic framework (FeTCPP/Fe2O3 MOF) nanorice was designed and constructed by the liquid diffusion method. The introduction of iron metal nodes and the loading of Fe2O3 can effectively catalyze the Fenton reaction to produce hydroxyl radicals (•OH) and overcome the hypoxic environment of tumor tissue by generating oxygen. The monodispersity and porosity of the porphyrin photosensitizers in the MOF structure exposed more active sites, which promoted energy exchange between porphyrin molecules and oxygen molecules for photodynamic therapy (PDT) treatment. Therefore, the generated hydroxyl radicals and singlet oxygen (1O2) can synergistically act on tumor cells to achieve the purpose of improving tumor therapy. Then the erythrocyte membrane was camouflaged to enhance blood circulation and tissue residence time in the body, and finally, the targeted molecule AS1411 aptamer was modified to achieve the high enrichment of MOF photosensitizers on a tumor domain. As a result, the MOF nanorice camouflaged by the erythrocyte membrane can effectively reduce side effects and improve the therapeutic effect of PDT and chemo-dynamic therapy (CDT). The study not only improved the efficacy of PDT and CDT in essence from the MOF nanorice but also used the camouflage method to further concentrate FeTCPP/Fe2O3 on the tumor sites, achieving the goal of multiple gains. These results will provide theoretical and practical directions for the development of tumor-targeted MOF nanomaterials.
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- 2020
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15. Influences of Xylitol Consumption at Different Dosages on Intestinal Tissues and Gut Microbiota in Rats
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Zheng Xiaoyang, Zuo Qile, Kai-Qian Chen, Mian Li, Xue Cai, Xuan Zhu, De-Shui Chen, Han Feifei, and Zhiqiang Liu
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Diarrhea ,Physiology ,Gut flora ,Xylitol ,Proinflammatory cytokine ,chemistry.chemical_compound ,Immune system ,Prevotella ,medicine ,Animals ,chemistry.chemical_classification ,biology ,food and beverages ,Fatty acid ,General Chemistry ,biology.organism_classification ,Fatty Acids, Volatile ,Gastrointestinal Microbiome ,Rats ,carbohydrates (lipids) ,Intestines ,chemistry ,Bacteroides ,medicine.symptom ,General Agricultural and Biological Sciences - Abstract
Xylitol is a widely used natural sweetener for the reduction of excessive sugar consumption. However, concerns of xylitol consumption existed as it is a highly permeable substance in the colon that could cause diarrhea and other adverse symptoms. To assess the relationship between xylitol dosage and diarrhea, especially the influences of diarrhea on physiological characteristics, the immune system, and gut microbiota in rats, the control, low-dose (L), medium-dose (M), and high-dose (H) groups were fed with 0, 1, 3, and 10% of xylitol, respectively, correspondingly for 15 days, followed by a 7-day recovery. Only medium- and high-dose xylitol would cause diarrhea in rats. Quantitative imaging of colonic tissue and the expression levels of proinflammatory factors revealed a higher degree of immune responses in the rats from H groups but statistically stable in M groups, despite that light diarrhea was observed. A shift of the gut microbiota composition was observed in the rats from H groups, including significant decreases of genera Ruminococcaceae and Prevotella and a notable increase and colonization of Bacteroides, accompanied with changes of short-chain fatty acid production. Tolerance and adaptation to xylitol consumption were observed in a dose-dependent manner. Our findings demonstrate that diarrhea caused by the high dosage of xylitol can exert distinctive changes on gut microbiota and lay the foundation to explore the mechanism underlying the shift in gut microbiota composition.
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- 2021
16. Changes in creatinine-to-cystatin C ratio over 4 years, risk of diabetes, and cardiometabolic control: The China Health and Retirement Longitudinal Study
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Yang Yuan, Bo Xie, Xue Cai, Shanhu Qiu, Zilin Sun, and Tongzhi Wu
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Male ,medicine.medical_specialty ,Longitudinal study ,Endocrinology, Diabetes and Metabolism ,Lower risk ,chemistry.chemical_compound ,Diabetes mellitus ,Internal medicine ,medicine ,Diabetes Mellitus ,Humans ,Longitudinal Studies ,Cystatin C ,Aged ,Creatinine ,biology ,business.industry ,Cardiometabolic Risk Factors ,Odds ratio ,Middle Aged ,medicine.disease ,Confidence interval ,chemistry ,biology.protein ,Female ,business ,Body mass index ,Biomarkers - Abstract
Creatinine-to-cystatin C ratio has attracted substantial interest as a measure to reflect health well-being, but no studies have assessed whether its longitudinal changes are associated with risk of diabetes. We aimed to examine their association, along with the exploration of the relationship of such changes with cardiometabolic control in middle-aged and older adults.We included a total of 3278 participants aged ≥45 years who provided measurements of creatinine and cystatin C at baseline and 4 years later from the China Health and Retirement Longitudinal Study. Diabetes was diagnosed based on glucose, hemoglobin A1c (HbA1c), medical history, or use of antidiabetic mediations. Odds ratio (OR) and 95% confidence interval (CI) were obtained using logistic regression analyses.After 4-year follow-up, 272 participants developed diabetes. Larger increases in creatinine-to-cystatin C ratio were associated with lower risk of diabetes. The multivariable-adjusted OR for diabetes per 1 SD increase in creatinine-to-cystatin C ratio was 0.84 (95% CI 0.72-0.98). Compared with participants showing decreases in creatinine-to-cystatin C ratio but increases in body mass index (BMI), those experiencing increases in creatinine-to-cystatin C ratio and decreases in BMI had the largest risk reduction (multivariable-adjusted OR 0.52). Changes in creatinine-to-cystatin C ratio showed inverse correlation with blood pressure, HbA1c, lipids, and C-reactive protein at the 4-year follow-up. Moreover, they also correlated inversely with changes in HbA1c and C-reactive protein (all P ≤ 0.004).Increases in creatinine-to-cystatin C ratio led to reduced risk of diabetes and may benefit cardiometabolic control.背景: 肌酐与胱抑素C比值作为反映健康状况的一种指标获得了广泛关注, 但没有研究评估其纵向变化是否与糖尿病风险相关。本研究旨在评估两者之间的关联, 并探索肌酐与胱抑素C比值的变化与中老年人心脏代谢控制的关系。 方法: 我们共纳入了3278名来自中国健康与养老追踪调查中年龄≥45岁且提供了基线和4年后肌酐和胱抑素C测量值的参与者。糖尿病的诊断标准主要依据葡萄糖、糖化血红蛋白A1c(HbA1c)、病史或抗糖尿病药物的使用。优势比(OR)和95%置信区间(CI)使用logistic回归分析获得。 结果: 经过4年的随访, 272名参与者罹患糖尿病。肌酐与胱抑素C比值增加越多, 糖尿病风险越低。肌酐与胱抑素C比值每增加1个标准差, 经多变量校正的糖尿病OR值为 0.84(95% CI 0.72-0.98)。与肌酐与胱抑素C比值降低但体重指数(BMI)增加的参与者相比, 那些肌酐与胱抑素C比值增加和BMI降低的参与者糖尿病风险降低最大(多变量调整后的OR为0.52)。在4年随访中, 肌酐与胱抑素C比值的变化与血压、HbA1c、血脂和 C反应蛋白呈负相关。此外, 它们还与HbA1c和C反应蛋白的变化呈负相关(所有 P ≤ 0.004)。 结论: 肌酐与胱抑素C比值的增加可使得糖尿病风险降低, 并可能有益于心脏代谢控制。.
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- 2021
17. The effects of family functioning and resilience on self‐management and glycaemic control among youth with type 1 diabetes
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Xue Cai, Hong Wang, Yan Dan, Min Zhu, Mingzi Li, Dan Luo, and Jingjing Xu
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Male ,Gerontology ,Adolescent ,media_common.quotation_subject ,Psychological intervention ,Structural equation modeling ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Surveys and Questionnaires ,Diabetes mellitus ,medicine ,Humans ,Family ,030212 general & internal medicine ,General Nursing ,media_common ,Glycated Hemoglobin ,Type 1 diabetes ,Self-management ,030504 nursing ,business.industry ,Blood Glucose Self-Monitoring ,Self-Management ,General Medicine ,Resilience, Psychological ,medicine.disease ,Distress ,Diabetes Mellitus, Type 1 ,Female ,Self Report ,Psychological resilience ,0305 other medical science ,business ,Psychosocial - Abstract
Aims and objectives To examine the effects of family functioning and resilience on self-management and glycaemic control among youth with type 1 diabetes and to determine whether resilience mediates the effects of family functioning on self-management and glycaemic control. Background Poor self-management and glycaemic control are common in youth with type 1 diabetes. Family functioning and resilience are known to be important psychosocial factors that contribute to individual health and development. However, no studies have explored the effects of family functioning and resilience on self-management and glycaemic control among youths with type 1 diabetes in mainland China. Design This study was conducted using a survey with a convenience sample following the STROBE guidelines. Methods A total of 204 Chinese youth who had been diagnosed with type 1 diabetes for at least 6 months were recruited. Family functioning, resilience, self-management and diabetes distress were measured using self-reports and standard measurement tools. Glycaemic control was assessed by glycated haemoglobin (HbA1C ) levels. A structural equation model was used to test the hypothesised model. Results The final model accounted for 52.1% and 19.5% of the total variance of self-management and HbA1C level, respectively. Resilience had a direct effect on self-management and an indirect effect on control of HbA1C . Family functioning had an indirect effect on both self-management and control of HbA1C through resilience. The model remained invariant across the mild-distress and severe-distress groups. Conclusion In Chinese youth with type 1 diabetes, resilience positively affected self-management and ultimately optimised glycaemic control, even in the presence of diabetes distress. Family functioning positively affected self-management and glycaemic control by promoting resilience. Relevance to clinical practice This study found that family functioning and resilience had positive effects on self-management and glycaemic control in youth. This study confirms the importance of incorporating resilience assessments and family-based resilience interventions into clinical nursing practice with youth with type 1 diabetes.
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- 2019
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18. High‐throughput proteomic analysis of<scp>FFPE</scp>tissue samples facilitates tumor stratification
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Eugenia Haralambieva, Lirong Chen, Patrick Roth, Tobias Weiss, Niels J. Rupp, Yi Zhu, Michael Weller, Peter J. Wild, Xiaoyan Yu, Sai Lou, Xiao Yi, Rui Sun, Jelena Ljubicic, Cédric Poyet, Ruedi Aebersold, Tiansheng Zhu, Dorothea Rutishauser, Bo Wang, Tiannan Guo, Elisabeth J. Rushing, Christine Fritz, X D Teng, Qing Zhong, Ludovic Gillet, Chen Chen, Xiaofei Gao, Ailsa Christiansen, Qiushi Zhang, Silvia Hofer, Michael B. Schmid, Xue Cai, Huanhuan Gao, Guan Ruan, Peter Blattmann, Zhicheng Wu, Karim Saba, Christian D. Fankhauser, Wolfram Jochum, and Chao Xu
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Proteomics ,SWATH ,0301 basic medicine ,tumor ,Cancer Research ,Tissue Fixation ,Proteome ,Formalin fixed paraffin embedded ,pressure cycling technology ,Computational biology ,Biology ,FFPE ,lcsh:RC254-282 ,Mass Spectrometry ,Cohort Studies ,03 medical and health sciences ,0302 clinical medicine ,Neoplasms ,Biopsy ,Pressure ,Genetics ,medicine ,Humans ,Degree of similarity ,ddc:610 ,Biomarker discovery ,Research Articles ,030304 developmental biology ,0303 health sciences ,Paraffin Embedding ,medicine.diagnostic_test ,General Medicine ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,Prognosis ,3. Good health ,030104 developmental biology ,Tissue sections ,ROC Curve ,Oncology ,030220 oncology & carcinogenesis ,Fresh frozen ,biomarker ,Molecular Medicine ,Pressure cycling ,Biomarker ,Pressure cycling technology ,Tumor ,Research Article - Abstract
Formalin-fixed, paraffin-embedded (FFPE), biobanked tissue samples offer an invaluable resource for clinical and biomarker research. Here we developed a pressure cycling technology (PCT)-SWATH mass spectrometry workflow to analyze FFPE tissue proteomes and applied it to the stratification of prostate cancer (PCa) and diffuse large B-cell lymphoma (DLBCL) samples. We show that the proteome patterns of FFPE PCa tissue samples and their analogous fresh frozen (FF) counterparts have a high degree of similarity and we confirmed multiple proteins consistently regulated in PCa tissues in an independent sample cohort. We further demonstrate temporal stability of proteome patterns from FFPE samples that were stored between one to 15 years in a biobank and show a high degree of the proteome pattern similarity between two types histological region of small FFPE samples, i.e. punched tissue biopsies and thin tissue sections of micrometer thickness, despite the existence of certain degree of biological variations. Applying the method to two independent DLBCL cohorts we identified myeloperoxidase (MPO), a peroxidase enzyme, as a novel prognostic marker. In summary, this study presents a robust proteomic method to analyze bulk and biopsy FFPE tissues and reports the first systematic comparison of proteome maps generated from FFPE and FF samples. Our data demonstrate the practicality and superiority of FFPE over FF samples for proteome in biomarker discovery. Promising biomarker candidates for PCa and DLBCL have been discovered.
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- 2019
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19. Association between circulating cell adhesion molecules and risk of type 2 diabetes: A meta-analysis
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Bingquan Yang, Jianing Liu, Zilin Sun, Jürgen M. Steinacker, Xue Cai, Martina Zügel, Shanhu Qiu, and Uwe Schumann
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0301 basic medicine ,Oncology ,medicine.medical_specialty ,Population ,Type 2 diabetes ,030204 cardiovascular system & hematology ,Global Health ,03 medical and health sciences ,0302 clinical medicine ,Blood serum ,Risk Factors ,Internal medicine ,Diabetes mellitus ,medicine ,Humans ,Endothelial dysfunction ,Cell adhesion ,education ,education.field_of_study ,business.industry ,Cell adhesion molecule ,medicine.disease ,030104 developmental biology ,Diabetes Mellitus, Type 2 ,Relative risk ,Morbidity ,Cardiology and Cardiovascular Medicine ,business ,Cell Adhesion Molecules ,Biomarkers - Abstract
Background and aims Cell adhesion molecules (CAMs) are implicated in the initiation and progression of atherosclerosis, but their association with risk of type 2 diabetes remains inconsistent. This meta-analysis aimed to quantify this association with dose-response analysis in the general population without type 2 diabetes at baseline. Methods Prospective studies, investigating the association of circulating (plasma/serum) CAMs, such as intercellular adhesion molecule-1 (ICAM-1), E-selectin, vascular cell adhesion molecule-1 (VCAM-1), and P-selectin, with risk of type 2 diabetes, were included. The overall relative risks (RRs) with 95% confidence intervals (CIs) were calculated using a random-effects model. Results Sixteen datasets from 15 studies were included. The overall RR was 1.88 (95% CI 1.59 to 2.23) per 1-ln μg/ml increase in ICAM-1, and 2.44 (95% CI 1.90 to 3.12) per 1-ln μg/ml increase in E-selectin. These associations were log-linearly shaped (both pnon-linearity >0.05) and independent of traditional cardiovascular risk factors (all p Conclusions Elevated circulating CAMs, especially ICAM-1 and E-selectin, led to increased risk of type 2 diabetes in a dose-dependent manner, supporting the assumption that endothelial dysfunction contributes to the development of diabetes.
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- 2019
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20. Association Between Cardiorespiratory Fitness and Risk of Heart Failure: A Meta-Analysis
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Zilin Sun, Uwe Schumann, Jürgen M. Steinacker, Bingquan Yang, Jianing Liu, Xue Cai, Martina Zügel, and Shanhu Qiu
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medicine.medical_specialty ,Population ,030204 cardiovascular system & hematology ,Risk Assessment ,03 medical and health sciences ,0302 clinical medicine ,Risk Factors ,Diabetes mellitus ,Internal medicine ,medicine ,Humans ,030212 general & internal medicine ,education ,Heart Failure ,education.field_of_study ,business.industry ,Cardiorespiratory fitness ,medicine.disease ,Confidence interval ,Cardiorespiratory Fitness ,Heart failure ,Meta-analysis ,Relative risk ,Cardiology ,Cardiology and Cardiovascular Medicine ,business ,Cohort study - Abstract
Background Evidence emerges that cardiorespiratory fitness (CRF) might be implicated in the development of heart failure (HF). This meta-analysis aimed to quantify the association between CRF exposed at baseline and HF risk with dose–response analysis and to assess whether CRF changes over time are correlated with alterations in HF risk. Methods and Results Cohort studies that assessed the association between CRF and risk of HF in subjects without baseline HF were included. Study-specific multivariate-adjusted relative risks (RRs) with 95% confidence intervals (CIs) were pooled using a random-effects model. Ten studies from 8 articles were included, enrolling 8987 incident HF cases from 154,598 participants. The RR of HF per 1-metabolic equivalent (MET) higher CRF at baseline was 0.82 (95% CI 0.80–0.84) in the overall population. The RRs were similar in men (0.82, 95% CI 0.80–0.85) and women (0.81, 95% CI 0.78–0.84), and remained minorly changed in patients with existing diabetes, hypertension, or cardiovascular disease at entry. No evidence of a nonlinear relationship between CRF at baseline and risk of HF was observed (Pnonlinearity = .18). The RR of HF per 1-MET increase in CRF over time was 0.79 (95% CI 0.67–0.93), and the measurement of CRF provided incremental value to the prediction of HF beyond conventional models. Conclusions High or increased CRF resulted in reduced risk of HF in a dose-dependent manner, supporting the necessity to increase CRF to prevent HF in clinical practice.
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- 2019
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21. ATG13 restricts viral replication by induction of type I interferon
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Xue-cai Yang, Tian-Yu Zhao, Jiang-Long Du, Jing Liu, Peng Ma, Xiao‐ye Jia, Chen Wang, Yan Zeng, Xin Cao, Kui-Zheng Cai, Fan-Fan Chang, Yu-jia Xue, Hai-Zhen Wang, Xue‐mei Wan, and Zhongren Ma
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HEK 293 cells ,Autophagy-Related Proteins ,Cell Biology ,Biology ,Autophagy-related protein 13 ,Virus Replication ,Virology ,Cell Line ,HEK293 Cells ,Viral replication ,Interferon ,Cell culture ,Interferon Type I ,medicine ,Autophagy ,Molecular Medicine ,Humans ,Letters to the Editor ,Letter to the Editor ,medicine.drug ,Signal Transduction - Published
- 2019
22. RETRACTED: Function of the PLZF gene in early development and self-renewal of T cells in mice
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Kui-Zheng Cai, Han-Yu Liu, Zhongren Ma, Xue-cai Yang, Xiao‐ye Jia, Hai-Zhen Wang, Xue‐mei Wan, Tian-Yu Zhao, Jing Liu, Jiang-Long Du, Fan-Fan Chang, Yan Zeng, and Xin Cao
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T-Lymphocytes ,medicine.medical_treatment ,Cell ,Biophysics ,Cell Count ,Thymus Gland ,Biology ,Biochemistry ,Andrology ,Mice ,RAG2 ,medicine ,Animals ,Promyelocytic Leukemia Zinc Finger Protein ,IL-2 receptor ,Cell Self Renewal ,Progenitor cell ,Molecular Biology ,Kidney ,Thymocytes ,Gene Expression Regulation, Developmental ,Cell Biology ,Mice, Inbred C57BL ,Haematopoiesis ,medicine.anatomical_structure ,Thymus transplantation ,Bone marrow ,Gene Deletion - Abstract
Background/aims The expression of transcription factor Zbtb1 is essential for the maintenance and development of various blood cells in the hematopoietic system. In the current study, we found that the total number of thymocytes in PLZF deficient mice was reduced compared with thymocytes in wild-type mice, and the number of early T-cell progenitors decreased. However, the decrease of thymocytes in PLZF deficient mice was not cell intrinsic. This study adds new information regarding the regulation of the PLZF gene in the development and self-renewal of T cells. Methods The thymus was isolated from newborn mice, and the two lobes of each thymus were physically separated. Each host received a thymus, two lobes, each placed at one end of the kidney, as described in the literature. Tail vein blood was periodically collected from some of the recipients and analyzed for the presence of peripheral blood T cells. Results In PLZF-EGFP reporter mice and neonatal thymus transplantation to the kidney, we found that PLZF was highly expressed in DN1 (Lineage-CD44+CD25-) cells of thymic grafts of Rag2/γc-/- recipient mice. We found that the proportion of PLZF wild-type and mutant-derived cells in the thymocytes of recipient mice after bone marrow transplantation is approximately equal to the competitive bone marrow chimeric mouse model, and all mice contain a normal thymus. Conclusion The development of T cells suggests that the effect of the PLZF gene on T cell differentiation and development is not cell intrinsic. However, in the neonatal mouse thymic transplant model in the Rag2/γc-/- recipient mouse, deletion of the PLZF gene results in a significant decrease in the proportion of DN1 cells from the donor in the thymic graft.
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- 2019
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23. OKN-007 Increases temozolomide (TMZ) Sensitivity and Suppresses TMZ-Resistant Glioblastoma (GBM) Tumor Growth
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Doo-Sik Kong, Mikhail G. Dozmorov, Kyeongsoon Kim, Jadith Ziegler, Debra Saunders, Nataliya Smith, Rheal A. Towner, Shinwook Kang, Chase A. Brown, Patricia Coutinho de Souza, James Battiste, Young Tae Kim, Jonathan D. Wren, Kar Ming Fung, Graham B. Wiley, Xue Cai, and Samantha Mallory
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0301 basic medicine ,Original article ,Cancer Research ,Temozolomide ,business.industry ,Cell growth ,Angiogenesis ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,lcsh:RC254-282 ,In vitro ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,0302 clinical medicine ,Oncology ,chemistry ,Apoptosis ,Cell culture ,In vivo ,030220 oncology & carcinogenesis ,Cancer research ,Medicine ,Growth inhibition ,business ,medicine.drug - Abstract
Treatment of glioblastoma (GBM) remains a challenge using conventional chemotherapy, such as temozolomide (TMZ), and is often ineffective as a result of drug resistance. We have assessed a novel nitrone-based agent, OKN-007, and found it to be effective in decreasing tumor volumes and increasing survival in orthotopic GBM xenografts by decreasing cell proliferation and angiogenesis and increasing apoptosis. In this study, we assessed combining OKN-007 with TMZ in vivo in a human G55 GBM orthotopic xenograft model and in vitro in TMZ-resistant and TMZ-sensitive human GBM cell lines. For the in vivo studies, magnetic resonance imaging was used to assess tumor growth and vascular alterations. Percent animal survival was also determined. For the in vitro studies, cell growth, IC50 values, RNA-seq, RT-PCR, and ELISA were used to assess growth inhibition, possible mechanism-of actions (MOAs) associated with combined OKN-007 + TMZ versus TMZ alone, and gene and protein expression levels, respectively. Microarray analysis of OKN-007–treated rat F98 glioma tumors was also carried out to determine possible MOAs of OKN-007 in glioma-bearing animals either treated or not treated with OKN-007. OKN-007 seems to elicit its effect on GBM tumors via inhibition of tumorigenic TGF-β1, which affects the extracellular matrix. When combined with TMZ, OKN-007 significantly increases percent survival, decreases tumor volumes, and normalizes tumor blood vasculature in vivo compared to untreated tumors and seems to affect TMZ-resistant GBM cells possibly via IDO-1, SUMO2, and PFN1 in vitro. Combined OKN-007 + TMZ may be a potentially potent treatment strategy for GBM patients.
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- 2019
24. In-depth serum proteomics reveals biomarkers of psoriasis severity and response to traditional Chinese medicine
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Chuanjian Lu, Jiayu Dai, Hao Deng, Meng Xu, Cheng Chang, Dong Li, Tiansheng Zhu, Timothy R D J Radstake, Hu Duan, Tiannan Guo, Yi Zhu, Yuan Liu, Xue Cai, Danni Yao, Liang Yue, Danke Xu, Kaikun Xu, Qiushi Zhang, Xiaobo Yu, Yaoting Sun, Yuhong Yan, Jingwen Deng, Dan Wang, Xiaomei Zhang, Yunping Zhu, Deepak M.W. Balak, and Ling Han
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Adult ,Male ,Proteomics ,0301 basic medicine ,Proteome ,Antibody microarray ,Data-Independent Acquisition Mass Spectrometry ,Protein Array Analysis ,Gene Expression ,Medicine (miscellaneous) ,Severity of Illness Index ,Mass Spectrometry ,Serology ,03 medical and health sciences ,0302 clinical medicine ,Psoriasis Area and Severity Index ,Psoriasis ,medicine ,Humans ,Medicine, Chinese Traditional ,Pharmacology, Toxicology and Pharmaceutics (miscellaneous) ,Chemokine CCL22 ,Principal Component Analysis ,Interleukin-12 Subunit p40 ,business.industry ,Blood Proteins ,Biomarker ,Middle Aged ,medicine.disease ,Blood proteins ,Elafin ,030104 developmental biology ,Case-Control Studies ,Antibody Microarray ,030220 oncology & carcinogenesis ,Immunology ,Biomarker (medicine) ,Female ,business ,Biomarkers ,Metabolic Networks and Pathways ,Drugs, Chinese Herbal ,Research Paper - Abstract
Serum and plasma contain abundant biological information that reflect the body's physiological and pathological conditions and are therefore a valuable sample type for disease biomarkers. However, comprehensive profiling of the serological proteome is challenging due to the wide range of protein concentrations in serum. Methods: To address this challenge, we developed a novel in-depth serum proteomics platform capable of analyzing the serum proteome across ~10 orders or magnitude by combining data obtained from Data Independent Acquisition Mass Spectrometry (DIA-MS) and customizable antibody microarrays. Results: Using psoriasis as a proof-of-concept disease model, we screened 50 serum proteomes from healthy controls and psoriasis patients before and after treatment with traditional Chinese medicine (YinXieLing) on our in-depth serum proteomics platform. We identified 106 differentially-expressed proteins in psoriasis patients involved in psoriasis-relevant biological processes, such as blood coagulation, inflammation, apoptosis and angiogenesis signaling pathways. In addition, unbiased clustering and principle component analysis revealed 58 proteins discriminating healthy volunteers from psoriasis patients and 12 proteins distinguishing responders from non-responders to YinXieLing. To further demonstrate the clinical utility of our platform, we performed correlation analyses between serum proteomes and psoriasis activity and found a positive association between the psoriasis area and severity index (PASI) score with three serum proteins (PI3, CCL22, IL-12B). Conclusion: Taken together, these results demonstrate the clinical utility of our in-depth serum proteomics platform to identify specific diagnostic and predictive biomarkers of psoriasis and other immune-mediated diseases.
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- 2019
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25. Application value of doppler ultrasound in renal hemodynamic monitoring in patients with septic shock
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Xue Cai and Wenwen Zhuang
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medicine.medical_specialty ,business.industry ,Septic shock ,Internal medicine ,medicine ,Cardiology ,In patient ,Renal hemodynamics ,General Medicine ,Doppler ultrasound ,business ,medicine.disease ,Value (mathematics) - Published
- 2021
26. Colocalized, bidirectional optogenetic modulations in freely behaving mice with a wireless dual-color optoelectronic probe
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Lizhu Li, Lihui Lu, Yuqi Ren, Guo Tang, Yu Zhao, Xue Cai, Zhao Shi, He Ding, Changbo Liu, Dali Cheng, Yang Xie, Huachun Wang, Xin Fu, Lan Yin, Minmin Luo, and Xing Sheng
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Male ,Opsin ,genetic structures ,Science ,Dopamine ,General Physics and Astronomy ,Optogenetics ,General Biochemistry, Genetics and Molecular Biology ,Mice ,medicine ,Premovement neuronal activity ,Wireless ,Animals ,Physics ,Multidisciplinary ,Behavior, Animal ,Opsins ,business.industry ,Dopaminergic Neurons ,Dopaminergic ,Ventral Tegmental Area ,Brain ,General Chemistry ,Ventral tegmental area ,Mice, Inbred C57BL ,medicine.anatomical_structure ,business ,Neuroscience ,Dual color ,Wireless Technology ,medicine.drug - Abstract
The precise control of neural activities at both cellular and circuit levels reveals significant impacts on the fundamental neuroscience explorations and medical applications. Optogenetic methods provide efficient cell-specific modulations, and the ability of simultaneous neural activation and inhibition in the same brain region of freely moving animals is highly desirable and being actively researched. Here we report bidirectional neuronal activity manipulation accomplished by a wireless, dual-color optogenetic probe in synergy with the co-expression of two spectrally distinct opsins (ChrimsonR and stGtACR2) in a rodent model. Based on vertically assembled, thin-film microscale light-emitting diodes (micro-LEDs) with a lateral dimension of 125 × 180 µm2 on flexible substrates, the dual-color probe shows colocalized red and blue emissions and allows chronic in vivo operations with desirable biocompatibilities. In addition, we discover that neurons co-expressing the two opsins can be deterministically evoked or silenced under red or blue irradiations. Implanted in behaving mice, the wirelessly controlled dual-color probe interferes with dopaminergic neurons in the ventral tegmental area (VTA), increasing or decreasing dopamine levels with colocalized red and blue stimulations. Such bidirectional regulations further generate rewarding and aversive behaviors of freely moving mice in a place preference test and interrogate social interactions among multiple mice. The technologies established here will create numerous opportunities and profound implications for brain research.
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- 2021
27. Combining fermentation to produce O-succinyl-l-homoserine and enzyme catalysis for the synthesis of l-methionine in one pot
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Zhiqiang Liu, Peng Liu, Kun Niu, Xue Cai, Wen-Yuan Zhu, and Yu-Guo Zheng
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Cutinase ,Methionine ,Stereochemistry ,Homoserine ,Bioengineering ,Methanethiol ,medicine.disease_cause ,Applied Microbiology and Biotechnology ,Catalysis ,Enzyme catalysis ,chemistry.chemical_compound ,chemistry ,Biocatalysis ,Fermentation ,medicine ,Escherichia coli ,Biotechnology - Abstract
The biosynthetic pathway of l -methionine in microorganisms was complex and regulated at multiple levels. In this study, a two-step method for l -methionine production combined fermentation and biocatalysis was realized in one pot. The O-succinyl- l -homoserine (OSH) producing strain Escherichia coli W3110(DE3) ΔIJB∗TrcmetL/pTrc-metAfbr-Trc-thrAfbr-yjeH (ΔIJB) was constructed initially. OSH in the fermentation supernatant was then converted to l -methionine in the presence of O-succinyl- l -homoserine sulfhydrylase (OSHS) and sodium methanethiol. The titer of l -methionine could reach 21.1 g/L after 88 h (84 h fermentation and 4 h catalysis) in a two-step method (process 1). In a one-pot two-strain system (process 2), two strains ΔIJB and E. coli BL21(DE3)/pET28b–OSHS–cutinase were co-cultured, and 8.24 g/L l -methionine was obtained. In another one-pot one-strain system (process 3), strain E. coli ΔIJB/pET28b–OSHS–cutinase could co-express OSHS and cutinase during ΔIJB fermentation at the same time, obtaining 13.6 g/L l -methionine in a 5 L fermentor after 84 h. By comparing the three processes for l -methionine production based on the process 1, the simplified process in process 3 provided in this study showed potent in the large-scale production of l -methionine with convenient handling and production efficiency, but further works still need to be carried out to improve the l -methionine production.
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- 2021
28. Is estimated cardiorespiratory fitness an effective predictor for cardiovascular and all-cause mortality? A meta-analysis
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Uwe Schumann, Tongzhi Wu, Zilin Sun, Xue Cai, and Shanhu Qiu
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0301 basic medicine ,medicine.medical_specialty ,Population ,030204 cardiovascular system & hematology ,Lower risk ,Body Mass Index ,03 medical and health sciences ,0302 clinical medicine ,Risk Factors ,Internal medicine ,Medicine ,Humans ,Prospective Studies ,Mortality ,education ,Prospective cohort study ,Exercise ,education.field_of_study ,business.industry ,Hazard ratio ,Cardiorespiratory fitness ,Confidence interval ,030104 developmental biology ,Cardiorespiratory Fitness ,Cardiovascular Diseases ,Exercise Test ,Cardiology and Cardiovascular Medicine ,business ,Body mass index ,Cohort study - Abstract
Background and aims Estimated cardiorespiratory fitness (eCRF) derived from algorithm correlates well with exercise testing-measured CRF, yet its clinical use for mortality risk stratification has not been systematically evaluated. This meta-analysis with dose-response analysis was conducted to quantify its association with risk of cardiovascular and all-cause mortality. Methods Electronic databases were searched for prospective cohort studies that investigated the association of eCRF with risk of cardiovascular and all-cause mortality. Study-specific multivariate-adjusted hazard ratios (HRs) and 95% confidence intervals (CIs) per 1-metabolic equivalent (MET) higher of eCRF were pooled using a random-effects model. Results Twenty-five datasets from 8 cohort studies that enrolled more than 170,000 participants were included. The summary HR per 1-MET higher of eCRF was 0.83 (95% CI 0.80 to 0.86) for cardiovascular mortality (11 datasets) and 0.83 (95% CI 0.78 to 0.88) for all-cause mortality (14 datasets) in the general population. These associations showed no sex-difference and were all linearly shaped (all pnonlinearity ≥ 0.27). The performance of eCRF (assessed by the area under the curve) in discriminating future risk of cardiovascular and all-cause mortality was higher than all its components (such as physical activity, resting heart rate, and body mass index, all p Conclusions Higher eCRF was independently associated with lower risk of cardiovascular and all-cause mortality in the general population, indicating that eCRF might hold the potential as an effective and practical risk prediction tool in epidemiological or population research.
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- 2021
29. Integrated bioinformatic analysis and experiment confirmation of the antagonistic effect and molecular mechanism of ginsenoside Rh2 in metastatic osteosarcoma
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Xin Lan, Guo-Wei Zuo, Zhangxu Zhou, Ziqian Ye, Dan Liu, Yanlai Zhang, Shixin Tu, Hao Wang, Zhilun Zhang, Zhang Zhang, Baoru Han, Xue Cai, and Xiaohan Mao
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MAPK/ERK pathway ,Ginsenosides ,Clinical Biochemistry ,Pharmaceutical Science ,Apoptosis ,Bone Neoplasms ,01 natural sciences ,Analytical Chemistry ,Phosphatidylinositol 3-Kinases ,Western blot ,Cell Line, Tumor ,Drug Discovery ,Gene expression ,medicine ,Humans ,MTT assay ,Protein kinase B ,Spectroscopy ,PI3K/AKT/mTOR pathway ,Cell Proliferation ,Osteosarcoma ,biology ,medicine.diagnostic_test ,010405 organic chemistry ,Chemistry ,010401 analytical chemistry ,Computational Biology ,0104 chemical sciences ,Mitogen-activated protein kinase ,Cancer research ,biology.protein - Abstract
This study aimed to compare the gene expression variation of clinical primary osteosarcoma (OS) and metastatic OS, identify expression profiles and signal pathways related to disease classification, and systematically evaluate the potential anticancer effect and molecular mechanism of ginsenoside Rh2 on OS. A raw dataset (GSE14359), which excluded GSM359137 and GSM359138, was downloaded from the Gene Expression Omnibus. Differentially expressed genes (DEGs) and principal component analysis (PCA) were obtained with limma. Pathways enrichment analysis was understood by GSEA app. Rh2-associated targets were harvested and mapped through PharmMapper and Cytoscape 3.4.0. The toxicity of Rh2 was determined using crystal staining and MTT assay on 143B and MG63 cell lines. The relative protein expression was confirmed through Western blot analysis. The mitochondrial membrane potential (△Ψm) was evaluated by JC-1 fluorescence staining. The cell mobility was measured via wound healing and transwell assays. A total of 752 genes were upregulated, while 161 genes were downregulated. GSEA and PCA displayed significant function enrichment and classification. Through PharmMapper and Cytoscape 3.4.0, Rh2 was found to target the mitogen activated protein kinase (MAPK) and PI3K signaling pathways, which are the key pathways in the metastasis of OS. Furthermore, Rh2 induced a concentration-dependent decrease in cell viability and early apoptosis associated with ΔΨm decline, while a non-lethal dose of Rh2 weakened the metastatic capability. Moreover, systematic evaluation showed that promoting the MAPK signaling pathway and inhibiting PI3K/Akt/mTOR were correlated with the anticancer effects of Rh2 on metastatic OS. In conclusion, transcriptome-derived approaches may be beneficial in diagnosing early metastases, and Rh2, a multi-targeting agent, shows promising application potential in suppressing metastatic OS in an MAPK- and PI3K/Akt/mTOR-dependent manner.
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- 2021
30. Feasibility to Reduce Swab RT-PCR Tests by Serum Proteomics for COVID-19 Disease Course Monitoring
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Xue Cai, Tong Sun, Fangfei Zhang, Nan Xiang, Chao Zhang, Bo Shen, Shuang Liang, Donglian Wang, Yaoting Sun, Liang Yue, Jing Yu, Yi Zhu, Jing Wang, Xiaoxu Zhou, Jiaqin Xu, Mengge Lyu, Ying Zhang, Kai Zhou, Tiannan Guo, Yufen Zheng, Weigang Ge, Luang Xu, Ruyue Lu, Hongguo Zhu, Minjie Lin, Guangjun Zhu, and Liujia Qian
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Live virus ,medicine.medical_specialty ,Serum proteomics ,Coronavirus disease 2019 (COVID-19) ,business.industry ,Family medicine ,medicine ,Technology Plan ,Symptom onset ,Serum samples ,business ,Omics ,Disease course - Abstract
The diagnosis and disease course monitoring of COVID-19 are mainly based on RT-PCR analysis of RNAs extracted from pharyngeal or nasopharyngeal swabs with potential live virus, posing a high risk to medical practitioners. Here, we investigated the feasibility of applying serum proteomics to classify COVID-19 patients in the nucleic acid positive (NCP) and negative (NCN) stages. We analyzed the proteome of 320 inactivated serum samples from 144 COVID-19 patients, and 45 controls and shortlisted 42 regulated proteins in the severe group and 12 regulated proteins in the non-severe group. Together with several key clinical indexes including days after symptom onset, platelet counts and magnesium, we developed machine learning models to classify NCP and NCN with an AUC of 0.94 for the severe cases and 0.89 for the non-severe cases. This study suggests the feasibility of utilizing quantitative serum proteomics for NCP-NCN classification. Funding: This work was supported by grants from the National Key R&D Program of China(No. 2020YFE0202200), National Natural Science Foundation of China (81672086), Zhejiang Province Analysis Test Project (2018C37032), the National Natural Science Foundation of China (81972492, 21904107), Zhejiang Provincial Natural Science Foundation for Distinguished Young Scholars (LR19C050001), Zhejiang Medical and Health Science and Technology Plan (2021KY394), Hangzhou Agriculture andSociety Advancement Program (20190101A04), and Westlake Education Foundation, Tencent Foundation. Conflict of Interest: Tiannan Guo is shareholder of Westlake Omics Inc. W.G. and N.X. are employees of Westlake Omics Inc. The remaining authors declare no competing interests. Ethical Approval: This study has been approved by both the Ethical/Institutional Review Boards of Taizhou Hospital and Westlake University. Informed contents from patients were waived by the boards.
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- 2021
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31. Four-year changes in central fatness, risk of diabetes, and metabolic control in older adults: a cohort study with mediation analysis
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Xue Cai, Dan Luo, Shuling Liu, Ruxue Li, Yanhui Lu, Mingzi Li, and Shanhu Qiu
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Glycated Hemoglobin ,Mediation Analysis ,Insulin resistance ,Follow-up studies ,Body Mass Index ,Cohort Studies ,Glucose ,Risk Factors ,Geriatrics ,Diabetes Mellitus ,Medicine ,Humans ,Original Article ,Obesity ,Waist Circumference ,Triglycerides ,Aged - Abstract
Background/Aims: Older adults are vulnerable to central obesity, while the association of changes in central fatness with risk of diabetes and metabolic control has not been investigated among this particular population. This study was aimed to address these issues.Methods: A total of 1,815 adults aged ≥ 60 years without diabetes at baseline were followed for 4 years. Incident diabetes was ascertained based on plasma glucose, hemoglobin A1c, medical history, and/or the use of anti-diabetic drugs. Central fatness was assessed by waist circumference (WC), waist-height ratio (WHtR), and body roundness index (BRI). Logistic regression analyses were used to assess the association of changes in central fatness with risk of diabetes, along with dose-response and mediation analyses.Results: During the 4-year follow-up, 177 participants developed diabetes. The risk of diabetes was increased by 42%, 41%, and 40% per 1 standard deviation increases in WC, WHtR, and BRI, respectively, in multivariable-adjusted models (all p < 0.01). Moreover, these relationships were all linearly-shaped (all pnonlinearity ≥ 0.11). Increases in WC, WHtR, and BRI correlated with increases in hemoglobin A1c, triglycerides-and-glucose index, triglycerides, white blood cell, and C-reactive protein (all p ≤ 0.04). Yet only changes in hemoglobin A1c and triglycerides-and-glucose index were identified as the possible mediators for risk of diabetes, with their mediating effect being about 35% and 21%, respectively.Conclusions: Increases in central fatness were related to elevated risk of diabetes, and this association might be partly explained by the worsening of glycemic control and insulin resistance in older adults.
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- 2020
32. Prevalence and Risk Factors for Diabetic Peripheral Neuropathy in Type 2 Diabetic Patients From 14 Countries: Estimates of the INTERPRET-DD Study
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Ruxue Li, Cathy E. Lloyd, Norman Sartorius, Pengbo Xing, Mingzi Li, Dan Luo, Xue Cai, and Yanhui Lu
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Adult ,Male ,medicine.medical_specialty ,Multivariate analysis ,Adolescent ,prevalence ,Disease ,Type 2 diabetes ,Logistic regression ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,depressive symptoms ,Diabetic Neuropathies ,Internal medicine ,Diabetes mellitus ,medicine ,Humans ,risk factors ,030212 general & internal medicine ,Depression (differential diagnoses) ,Original Research ,Aged ,Glycated Hemoglobin ,business.industry ,030503 health policy & services ,Medical record ,diabetic peripheral neuropathy ,lcsh:Public aspects of medicine ,Public Health, Environmental and Occupational Health ,lcsh:RA1-1270 ,Middle Aged ,medicine.disease ,Peripheral neuropathy ,Diabetes Mellitus, Type 2 ,diabetes mellitus ,Female ,Public Health ,0305 other medical science ,business - Abstract
Aim: Diabetic peripheral neuropathy (DPN) is a common, severe microvascular complication of diabetes. Our study was to assess prevalence and risk factors for DPN in subjects with type 2 diabetes from 14 different countries. Methods: A total of 2,733 subjects with type 2 diabetes aged 18–65 years (45.3% men, mean duration of diabetes = 8.8 years) were included to perform this International Prevalence and Treatment of Diabetes and Depression (INTERPRET-DD) study in 14 countries. After a structured questionnaire was used in face-to-face interviews to collect sociodemographic characteristics and medical records of the participating subjects, laboratory tests were carried out for clinical measurement. Depressive symptoms were diagnosed and measured using the Patient Health Questionnaire-9. The potential risk factors for DPN were determined by multilevel mixed-effects logistic regression, accounting for clustering of participants within the country. Robustness of the estimates was assessed by sensitivity analysis. Results: The overall prevalence of DPN across different countries was 26.71%, whereas country-specific prevalences showed considerable variation. Multivariate analysis revealed that duration of diabetes (OR: 1.08 per 1-year increase, 95% CI: 1.06–1.09), poor glycemic control (OR: 1.11 per 1% increase in HbA1c, 95% CI: 1.05–1.18), and history of hypertension (OR: 1.58, 95% CI: 1.18–2.12), cardiovascular disease (OR: 2.07, 95% CI: 1.55–2.78) and depressive symptoms (OR: 1.92, 95% CI: 1.43–2.58) were independently and positively associated with the risk of DPN. Sensitivity analyses including or excluding patients from countries with extreme low or high prevalence of DPN yielded similar estimates in terms of trend and magnitude. Conclusions: This international study illustrates that more than a quarter of individuals with type 2 diabetes developed DPN. The prevalence was positively associated with the duration of diabetes, poor glycemic control, and history of hypertension, cardiovascular disease and depressive symptoms.
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- 2020
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33. Application of microfluidic devices for glioblastoma study: current status and future directions
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Robert G. Briggs, Ethan J Davis, Yueh-Hsin Lin, James Battiste, Hannah B. Homburg, Isabella M. Young, Michael E. Sughrue, and Xue Cai
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business.industry ,010401 analytical chemistry ,Biomedical Engineering ,Model system ,02 engineering and technology ,Disease ,021001 nanoscience & nanotechnology ,Malignancy ,medicine.disease ,01 natural sciences ,Treatment failure ,nervous system diseases ,0104 chemical sciences ,Malignant Primary Brain Tumors ,Drug treatment ,Lab-On-A-Chip Devices ,Cancer research ,medicine ,Animals ,Humans ,Glioblastoma ,0210 nano-technology ,business ,Molecular Biology - Abstract
Glioblastoma (GBM) is one of the most malignant primary brain tumors. This neoplasm is the hardest to treat and has a bad prognosis. Because of the characteristics of genetic heterogeneity and frequent recurrence, a successful cure for the disease is unlikely. Increasing evidence has revealed that the GBM stem cell-like cells (GSCs) and microenvironment are key elements in GBM recurrence and treatment failure. To better understand the mechanisms underlying this disease and to develop more effective therapeutic strategies for treatment, suitable approaches, techniques, and model systems closely mimicking real GBM conditions are required. Microfluidic devices, a model system mimicking the in vivo brain microenvironment, provide a very useful tool to analyze GBM cell behavior, their correlation with tumor malignancy, and the efficacy of multiple drug treatment. This paper reviews the applications of microfluidic devices in GBM research and summarizes progress and perspectives in this field.
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- 2020
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34. Gut Microbiota May Underlie the Predisposition of Healthy Individuals to COVID-19-Sensitive Proteomic Biomarkers
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Fengzhe Xu, Yuanqing Fu, Haihong Zhao, Menglei Shuai, Jun Wang, Ju-Sheng Zheng, Yu-ming Chen, Wanglong Gou, Zengliang Jiang, Wenhua Ling, Yi Zhu, Congmei Xiao, Xiaomai Wu, Hao Chen, Tiannan Guo, Bo Shen, Xiao Yi, Zelei Miao, Liang Yue, Mian-li Xiao, Geng-dong Chen, and Xue Cai
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Coronavirus disease 2019 (COVID-19) ,biology ,business.industry ,Healthy individuals ,Immunology ,Medicine ,Gut flora ,business ,biology.organism_classification - Abstract
Background: The COVID-19 pandemic is spreading globally with high disparity in the susceptibility of the disease severity. Identification of the key underlying factors for this disparity is highly warranted. Results: Here we describe constructing a proteomic risk score (PRS) based on 20 blood proteomic biomarkers which related to the progression to severe COVID-19. Among COVID-19 patients, per 10% increment in the PRS was associated with a 57% higher risk of progressing to clinically severe phase (RR=1.57; 95% CI, 1.35-1.82). We demonstrate that in our own cohort of 990 individuals without infection, this proteomic risk score is positively associated with proinflammatory cytokines mainly among older, but not younger, individuals. We further discovered that a core set of gut microbiota could accurately predict the blood proteomic biomarkers of COVID-19 using a machine learning model. The core OTU-predicted PRS had a significant correlation with actual PRS both cross-sectionally (n=132, pConclusions: Our study suggests that gut microbiota may underlie the predisposition of healthy individuals to COVID-19-sensitive proteomic biomarkers.
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- 2020
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35. Silencing miR-370-3p rescues funny current and sinus node function in heart failure
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Xue Cai, Yanwen Wang, Andrew Atkinson, Stanislav O. Zakharkin, Mark R. Boyett, Jonathan Ariyaratnam, Elizabeth J. Cartwright, Maria Petkova, Christina Hayward, Bryan A. Whitson, Vadim V. Fedorov, Ursula Doris, Min Zi, Peter J. Mohler, Sam Griffiths-Jones, Sunil Jit R. J. Logantha, George Hart, Paul M.L. Janssen, Joseph Yanni, Moinuddin Choudhury, Matthew Smith, Shu Nakao, Delvac Oceandy, Halina Dobrzynski, Leo A. H. Zeef, Alicia D'Souza, Ning Li, and Brian J. Hansen
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0301 basic medicine ,Bradycardia ,Male ,medicine.medical_specialty ,Sinus bradycardia ,lcsh:Medicine ,Down-Regulation ,Cardiomegaly ,030204 cardiovascular system & hematology ,Article ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Downregulation and upregulation ,Fibrosis ,Heart Rate ,Internal medicine ,Heart rate ,medicine ,Hyperpolarization-Activated Cyclic Nucleotide-Gated Channels ,Gene silencing ,Animals ,Humans ,Gene Silencing ,lcsh:Science ,Sinus (anatomy) ,Sinoatrial Node ,Heart Failure ,Multidisciplinary ,Binding Sites ,business.industry ,lcsh:R ,Body Weight ,Computational Biology ,medicine.disease ,Rats ,Mice, Inbred C57BL ,Cardiac hypertrophy ,MicroRNAs ,030104 developmental biology ,medicine.anatomical_structure ,Heart failure ,Cardiology ,lcsh:Q ,medicine.symptom ,business - Abstract
Bradyarrhythmias are an important cause of mortality in heart failure and previous studies indicate a mechanistic role for electrical remodelling of the key pacemaking ion channel HCN4 in this process. Here we show that, in a mouse model of heart failure in which there is sinus bradycardia, there is upregulation of a microRNA (miR-370-3p), downregulation of the pacemaker ion channel, HCN4, and downregulation of the corresponding ionic current, If, in the sinus node. In vitro, exogenous miR-370-3p inhibits HCN4 mRNA and causes downregulation of HCN4 protein, downregulation of If, and bradycardia in the isolated sinus node. In vivo, intraperitoneal injection of an antimiR to miR-370-3p into heart failure mice silences miR-370-3p and restores HCN4 mRNA and protein and If in the sinus node and blunts the sinus bradycardia. In addition, it partially restores ventricular function and reduces mortality. This represents a novel approach to heart failure treatment.
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- 2020
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36. Proteomic and Metabolomic Characterization of COVID-19 Patient Sera
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Xuan Ding, Nan Xiang, Yi Zhu, Haixiao Chen, Lu Li, Weigang Ge, Shuang Liang, Jun Li, Guan Ruan, Haixi Yan, Hao Chen, Xiao Liang, Ying Zhang, Baofu Chen, Tiannan Guo, Sheng Quan, Jiansheng Zhu, Chao Zhang, Bo Shen, Xiaojie Bi, Liujia Qian, Donglian Wang, Xue Cai, Tian Lu, Zhouyang Kang, Xiao Yi, Rui Sun, Jiaqin Xu, Fangfei Zhang, Ziqing Kong, Qi Xiao, Yaoting Sun, Juping Du, Wei Liu, Huanhuan Gao, Huafen Liu, Zebao He, Sainan Li, Jing Wang, and Yufen Zheng
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Oncology ,Male ,Proteomics ,Metabolite ,Serum protein ,severity ,Disease ,Severity of Illness Index ,Machine Learning ,chemistry.chemical_compound ,0302 clinical medicine ,Platelet degranulation ,Medicine ,Cluster Analysis ,Amino Acids ,0303 health sciences ,Middle Aged ,metabolomics ,Pathophysiology ,Cohort ,Female ,Coronavirus Infections ,Adult ,medicine.medical_specialty ,Coronavirus disease 2019 (COVID-19) ,Pneumonia, Viral ,Early detection ,macromolecular substances ,Biology ,Article ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,Metabolomics ,Internal medicine ,Severity of illness ,Effective treatment ,Humans ,Pandemics ,030304 developmental biology ,business.industry ,Macrophages ,COVID-19 ,Lipid Metabolism ,Training cohort ,Complement system ,chemistry ,Immunology ,business ,serum ,Biomarkers ,030217 neurology & neurosurgery - Abstract
Summary Early detection and effective treatment of severe COVID-19 patients remain major challenges. Here, we performed proteomic and metabolomic profiling of sera from 46 COVID-19 and 53 control individuals. We then trained a machine learning model using proteomic and metabolomic measurements from a training cohort of 18 non-severe and 13 severe patients. The model was validated using 10 independent patients, 7 of which were correctly classified. Targeted proteomics and metabolomics assays were employed to further validate this molecular classifier in a second test cohort of 19 COVID-19 patients, leading to 16 correct assignments. We identified molecular changes in the sera of COVID-19 patients compared to other groups implicating dysregulation of macrophage, platelet degranulation, complement system pathways, and massive metabolic suppression. This study revealed characteristic protein and metabolite changes in the sera of severe COVID-19 patients, which might be used in selection of potential blood biomarkers for severity evaluation., Graphical Abstract, Highlights • 93 proteins show differential expression in severe COVID-19 patient sera • 204 metabolites in COVID-19 patient sera correlate with disease severity • A model composed of 29 serum factors shows patient stratification potential • Pathway analysis highlights metabolic and immune dysregulation in COVID-19 patients, Proteomic and metabolomic analysis of COVID-19 sera identifies differentially expressed factors that correlate with disease severity and highlights dysregulation of multiple immune and metabolic components in clinically severe patients.
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- 2020
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37. Proteomics Uncovers Immunosuppression in COVID-19 Patients with Long Disease Course
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Lu Li, Qiushi Zhang, Jianping Huang, Tiannan Guo, Jianyi Dai, Xiao Liang, Chongquan Huang, Meng Luo, Tian Lu, Kexin Liu, Rui Sun, Yan Li, Xue Cai, Wei Liu, Shufen Li, Yi Zhu, Huanhuan Gao, Liujia Qian, Guan Ruan, Shaohua Tang, Weigang Ge, Xueqin Xu, Qi Xiao, Huangzheng Li, Fei Xu, Lianpeng Wu, Tingting Mao, Sainan Li, and Hao Chen
- Subjects
Innate immune system ,Coronavirus disease 2019 (COVID-19) ,business.industry ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,medicine.medical_treatment ,Immunology ,Cohort ,Medicine ,Immunosuppression ,business ,Proteomics ,Blood proteins ,Disease course - Abstract
Little is known regarding why a subset of COVID-19 patients exhibited prolonged positivity of SARS-CoV-2 infection. Here, we studied the sera proteomic dynamics in 37 COVID-19 patients over nine weeks, quantifying 2700 proteins with high quality. Remarkably, we found that during the first three weeks since disease onset, while clinical symptoms and outcome were indistinguishable, patients with prolonged disease course displayed characteristic immunological responses including enhanced Natural Killer cell-mediated innate immunity and regulatory T cell-mediated immunosuppression. We further showed that it is possible to predict the length of disease course using machine learning based on blood protein levels during the first three weeks. Validation in an independent cohort achieved an accuracy of 82%. In summary, this study presents a rich serum proteomic resource to understand host responses in COVID-19 patients and identifies characteristic Treg-mediated immunosuppression in patients with prolonged disease course, nominating new therapeutic target and diagnosis strategy.
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- 2020
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38. Gut microbiota may underlie the predisposition of healthy individuals to COVID-19
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Menglei Shuai, Ju-Sheng Zheng, Xue Cai, Haihong Zhao, Wenhua Ling, Mian-li Xiao, Xiaomai Wu, Congmei Xiao, Yu-ming Chen, Tiannan Guo, Bo Shen, Jun Wang, Yuanqing Fu, Fengzhe Xu, Geng-dong Chen, Yi Judy Zhu, Zelei Miao, Hao Chen, Wanglong Gou, Xiao Yi, Liang Yue, and Zengliang Jiang
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Framingham Risk Score ,biology ,Coronavirus disease 2019 (COVID-19) ,Inflammation ,Gut flora ,biology.organism_classification ,digestive system ,Proinflammatory cytokine ,Metabolomics ,Immunology ,Cohort ,medicine ,medicine.symptom ,Feces - Abstract
SUMMARYThe COVID-19 pandemic is spreading globally with high disparity in the susceptibility of the disease severity. Identification of the key underlying factors for this disparity is highly warranted. Here we describe constructing a proteomic risk score based on 20 blood proteomic biomarkers which predict the progression to severe COVID-19. We demonstrate that in our own cohort of 990 individuals without infection, this proteomic risk score is positively associated with proinflammatory cytokines mainly among older, but not younger, individuals. We further discovered that a core set of gut microbiota could accurately predict the above proteomic biomarkers among 301 individuals using a machine learning model, and that these gut microbiota features are highly correlated with proinflammatory cytokines in another set of 366 individuals. Fecal metabolomic analysis suggested potential amino acid-related pathways linking gut microbiota to inflammation. This study suggests that gut microbiota may underlie the predisposition of normal individuals to severe COVID-19.
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- 2020
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39. Protein Classifier for Thyroid Nodules Learned from Rapidly Acquired Proteotypes
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Yi Zhu, Xue Cai, Serene Jie Yi Yeow, Zhicheng Wu, Xi Zheng, Huanhuan Gao, Zhihong Wang, Tiannan Guo, Sangeeta Mantoo, Xu Zheng, Bhuvaneswari Hariraman, Kailun Xu, Wei Liu, Zelin Zang, Tiansheng Zhu, Lirong Chen, Yuan Qin, Guan Ruan, Junhong Xiao, Oi Lian Kon, Hao Zhang, Sathiyamoorthy Selvarajan, Sze Sing Lee, Kexin Liu, Tony Kiat-Hon Lim, Qi Xiao, Linyan Wang, Yi He, Wei Sun, Guangzhi Wang, X D Teng, Ruedi Aebersold, Hao Chen, Stan Z. Li, N. Gopalakrishna Iyer, Qiushi Zhang, Yongfu Zhao, Yaoting Sun, Shu Zheng, Syed Muhammad Fahmy bin Syed Abdillah, Yingkuan Shao, and Weibin Wang
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Thyroid nodules ,medicine.medical_specialty ,medicine.anatomical_structure ,business.industry ,Cytopathology ,Thyroid ,medicine ,A protein ,Diagnostic accuracy ,Radiology ,medicine.disease ,business ,Classifier (UML) - Abstract
SUMMARYUp to 30% of thyroid nodules cannot be accurately classified as benign or malignant by cytopathology. Diagnostic accuracy can be improved by nucleic acid-based testing, yet a sizeable number of diagnostic thyroidectomies remains unavoidable. In order to develop a protein classifier for thyroid nodules, we analyzed the quantitative proteomes of 1,725 retrospective thyroid tissue samples from 578 patients using pressure-cycling technology and data-independent acquisition mass spectrometry. With artificial neural networks, a classifier of 14 proteins achieved over 93% accuracy in classifying malignant thyroid nodules. This classifier was validated in retrospective samples of 271 patients (91% accuracy), and prospective samples of 62 patients (88% accuracy) from four independent centers. These rapidly acquired proteotypes and artificial neural networks supported the establishment of an effective protein classifier for classifying thyroid nodules.
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- 2020
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40. DPHL: A pan-human protein mass spectrometry library for robust biomarker discovery
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Tiansheng Zhu, Yi Zhu, Yue Xuan, Huanhuan Gao, Xue Cai, Sander R. Piersma, Thang V. Pham, Tim Schelfhorst, Richard R Goeij De Haas, Irene V. Bijnsdorp, Rui Sun, Liang Yue, Guan Ruan, Qiushi Zhang, Mo Hu, Yue Zhou, Winan J. Van Houdt, T.Y.S Lelarge, J. Cloos, Anna Wojtuszkiewicz, Danijela Koppers-Lalic, Franziska Böttger, Chantal Scheepbouwer, R.H Brakenhoff, G.J.L.H. van Leenders, Jan N.M. Ijzermans, J.W.M. Martens, R.D.M. Steenbergen, N.C. Grieken, Sathiyamoorthy Selvarajan, Sangeeta Mantoo, Sze Sing Lee, Serene Jie Yi Yeow, Syed Muhammad Fahmy Alkaff, Nan Xiang, Yaoting Sun, Xiao Yi, Shaozheng Dai, Wei Liu, Tian Lu, Zhicheng Wu, Xiao Liang, Man Wang, Yingkuan Shao, Xi Zheng, Kailun Xu, Qin Yang, Yifan Meng, Cong Lu, Jiang Zhu, Jin’e Zheng, Bo Wang, Sai Lou, Yibei Dai, Chao Xu, Chenhuan Yu, Huazhong Ying, Tony Kiat-hon Lim, Jianmin Wu, Xiaofei Gao, Zhongzhi Luan, Xiaodong Teng, Peng Wu, Shi’ang Huang, Zhihua Tao, N. Gopalakrishna Iyer, Shuigeng Zhou, Wenguang Shao, Henry Lam, Ding Ma, Jiafu Ji, Oi Lian Kon, Shu Zheng, Ruedi Aebersold, Connie R. Jimenez, and Tiannan Guo
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Oncology ,medicine.medical_specialty ,business.industry ,Colorectal cancer ,Cancer ,medicine.disease ,Prostate cancer ,Targeted mass spectrometry ,Internal medicine ,medicine ,Adenocarcinoma ,Biomarker (medicine) ,Data-independent acquisition ,Biomarker discovery ,business - Abstract
To answer the increasing need for detecting and validating protein biomarkers in clinical specimens, proteomic techniques are required that support the fast, reproducible and quantitative analysis of large clinical sample cohorts. Targeted mass spectrometry techniques, specifically SRM, PRM and the massively parallel SWATH/DIA technique have emerged as a powerful method for biomarker research. For optimal performance, they require prior knowledge about the fragment ion spectra of targeted peptides. In this report, we describe a mass spectrometric (MS) pipeline and spectral resource to support data-independent acquisition (DIA) and parallel reaction monitoring (PRM) based biomarker studies. To build the spectral resource we integrated common open-source MS computational tools to assemble an open source computational workflow based on Docker. It was then applied to generate a comprehensive DIA pan-human library (DPHL) from 1,096 data dependent acquisition (DDA) MS raw files, and it comprises 242,476 unique peptide sequences from 14,782 protein groups and 10,943 SwissProt-annotated proteins expressed in 16 types of cancer samples. In particular, tissue specimens from patients with prostate cancer, cervical cancer, colorectal cancer, hepatocellular carcinoma, gastric cancer, lung adenocarcinoma, squamous cell lung carcinoma, diseased thyroid, glioblastoma multiforme, sarcoma and diffuse large B-cell lymphoma (DLBCL), as well as plasma samples from a range of hematologic malignancies were collected from multiple clinics in China, the Netherlands and Singapore and included in the resource. This extensive spectral resource was then applied to a prostate cancer cohort of 17 patients, consisting of 8 patients with prostate cancer (PCa) and 9 with benign prostate hyperplasia (BPH), respectively. Data analysis of DIA data from these samples identified differential expressions of FASN, TPP1 and SPON2 in prostate tumors. Thereafter, PRM validation was applied to a larger PCa cohort of 57 patients and the differential expressions of FASN, TPP1 and SPON2 in prostate tumors were validated. As a second application, the DPHL spectral resource was applied to a patient cohort consisting of samples from 19 DLBCL patients and 18 healthy individuals. Differential expressions of CRP, CD44 and SAA1 between DLBCL cases and healthy controls were detected by DIA-MS and confirmed by PRM. These data demonstrate that the DPHL supported that DIA-PRM MS pipeline enables robust protein biomarker discoveries.
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- 2020
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41. A circulating extracellular vesicles-based novel screening tool for colorectal cancer revealed by shotgun and data-independent acquisition mass spectrometry
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Jian Wang, Ting Chen, Xue Cai, Qilong Li, Liang Zhu, Shaojun Yu, Fei Wen, Zhicheng Wu, Kailun Xu, Biting Zhou, Wei Liu, Huanhuan Gao, Tiannan Guo, Weiting Ge, Liang Yue, Tiansheng Zhu, Guan Ruan, Yi Zhu, Yanqin Huang, Shu Zheng, Lifeng Sun, Xi Zheng, Qiushi Zhang, and Yingkuan Shao
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0301 basic medicine ,Histology ,Colorectal cancer ,proteome ,Shotgun ,colorectal cancer ,Mass spectrometry ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Data-independent acquisition ,lcsh:QH573-671 ,dia mass spectrometry ,business.industry ,lcsh:Cytology ,Cancer ,Cell Biology ,Extracellular vesicle ,medicine.disease ,030104 developmental biology ,030220 oncology & carcinogenesis ,Proteome ,Cancer research ,Biomarker (medicine) ,biomarker ,extracellular vesicle ,business ,Research Article - Abstract
Background: Early screening for colorectal cancer (CRC) is essential to improve its prognosis. Liquid biopsies are increasingly being considered for diagnosing cancer due to low invasiveness and high reproducibility. In addition, circulating extracellular vesicles (crEVs, extracellular vesicles isolated from plasma) expressing tumour-specific proteins are potential biomarkers for various cancers. Here, we present a data-independent acquisition (DIA)-mass spectrometry (MS)-based diagnostic method for liquid biopsies. Methods: Extracellular vesicles (EVs) were isolated from culture supernatants of human CRC cell lines, and plasma of patients with CRC at different tumour stages, by overnight ultracentrifugation coupled with sucrose density gradient centrifugation. Tumour-specific EV proteins were prioritized using Tandem Mass Tag (TMT)-based shotgun proteomics and phosphoproteomics. The results were verified in a second independent cohort and a mouse tumour-bearing model using Western blotting (WB). The candidate biomarkers were further validated in a third cohort by DIA-MS. Finally, the DIA-MS methodology was accelerated to permit high-throughput detection of EV biomarkers in another independent cohort of patients with CRC and healthy controls. Results: High levels of total and phosphorylated fibronectin 1 (FN1) in crEVs, haptoglobin (HP), S100A9 and fibrinogen α chain (FGA) were significantly associated with cancer progression. FGA was the most dominant biomarker candidate. Analysis of the human CRC cell lines and the mouse model indicated that FGA+ crEVs were likely released by CRC cells. Furthermore, fast DIA-MS and parallel reaction monitoring (PRM)-MS both confirmed that FGA+ crEVs could distinguish colon adenoma with an area of curve (AUC) in the receiver operating characteristic (ROC) curve of 0.949 and patients with CRC (AUC of ROC is 1.000) from healthy individuals. The performance outperformed conventional tumour biomarkers. The DIA-MS quantification of FGA+ crEVs among three groups agreed with that from PRM-MS. Conclusion: DIA-MS detection of FGA+ crEVs is a potential rapid and non-invasive screening tool to identify early stage CRC. Abbreviations: FGA: fibrinogen α chain; CRC: colorectal cancer; crEVs: circulating extracellular vesicles; EV: extracellular vesicles;MS: mass spectrometry; WB: Western blotting; ROC: receiver operating characteristic; PRM: Parallel Reaction Monitoring; GPC1: Glypican-1; GO: Gene ontology; TEM: transmission electron microscopy; FN1: Fibronectin 1; HP: haptoglobin; TMT: Tandem Mass Tag; LC-MS/MS: liquid chromatography coupled to tandem mass spectrometry; DIA: data-independent acquisition; DDA: data-dependent acquisition; CiRT: Common internal Retention Time standards;AGC: Automatic gain control; AUC: area under curve.
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- 2020
42. Proteomics Uncovers Immunosuppression in COVID-19 Patients with Long Disease Course
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Tian Lu, Meng Luo, Huanhuan Gao, Kexin Liu, Wei Liu, Shufen Li, Rui Sun, Lu Li, Shaohua Tang, Liujia Qian, Jianping Huang, Lianpeng Wu, Tiannan Guo, Tingting Mao, Jianyi Dai, Xiao Liang, Chongquan Huang, Weigang Ge, Xueqin Xu, Qiushi Zhang, Fei Xu, Sainan Li, Yi Zhu, Xue Cai, Hao Chen, Yan Li, Qi Xiao, Huangzheng Li, and Guan Ruan
- Subjects
Innate immune system ,Coronavirus disease 2019 (COVID-19) ,business.industry ,medicine.medical_treatment ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,Immunology ,Cohort ,medicine ,Immunosuppression ,business ,Proteomics ,Blood proteins ,Disease course - Abstract
Little is known regarding why a subset of COVID-19 patients exhibited prolonged positivity of SARS-CoV-2 infection. Here, we present a longitudinal sera proteomic resource for 37 COVID-19 patients over nine weeks, in which 2700 proteins were quantified with high quality. Remarkably, we found that during the first three weeks since disease onset, while clinical symptoms and outcome were indistinguishable, patients with prolonged disease course displayed characteristic immunological responses including enhanced Natural Killer (NK) cell-mediated innate immunity and regulatory T cell-mediated immunosuppression. We further showed that it is possible to predict the length of disease course using machine learning based on blood protein levels during the first three weeks. Validation in an independent cohort achieved an accuracy of 82%. In summary, this study presents a rich serum proteomic resource to understand host responses in COVID-19 patients and identifies characteristic Treg-mediated immunosuppression in LC patients, nominating new therapeutic target and diagnosis strategy.
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- 2020
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43. Glioma cell-derived FGF20 suppresses macrophage function by activating β-catenin
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Weichen Tao, Xue Cai, and Lei Li
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Chemistry ,Macrophages ,medicine.medical_treatment ,Macrophage polarization ,Glioma ,Cell Biology ,Macrophage Activation ,Fibroblast growth factor ,medicine.disease ,Fibroblast Growth Factors ,Paracrine signalling ,Cytokine ,Downregulation and upregulation ,Catenin ,Tumor Microenvironment ,Cancer research ,medicine ,Humans ,Macrophage ,beta Catenin - Abstract
Macrophages, which are the main regulators of the tumor-associated microenvironment, play a crucial role in the progression of various tumors. The anti-inflammatory role of β-catenin in macrophages has been extensively studied in recent years. However, the association between macrophages and β-catenin with regards to the development of glioma has not yet been investigated, at least to the best of our knowledge. The present study found that fibroblast growth factor 20 (FGF20), as a paracrine cytokine, was secreted by glioma cells and acted on macrophages. FGF20 treated macrophages exhibited a decreased pro-inflammatory phenotype upon LPS and IFN-γ stimulation, characterized by the decreased the level of M1 macrophage markers and the reduced production of pro-inflammatory cytokines. Mechanistic analysis revealed that FGF20 interacted with FGF receptor 1 isoform of macrophages, and subsequently increased the stability of β-catenin via phosphorylating GSK3β, which suppressed macrophage polarization to the M1-phenotype. Finally, it was found that FGF20 of glioma cells expression was upregulated by the glucocorticoids (GCs) treatment, and decreased FGF20 expression of glioma cells markedly blocked the effects of GCs on the polarization of macrophages. On the whole, the present study demonstrates that FGF20, secreted from glioma cells, participates the GCs regulated macrophage function and exerts anti-inflammatory effects during the treatment of glioma by GCs. Moreover, a molecular link was identified between glioma cells and macrophages, demonstrating that FGF20 modulates the GCs-induced dysfunction of macrophages during glioma development.
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- 2022
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44. Effect of simulated intraosseous sinusoidal pressure on NaOCl extrusion
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Franklin Chi Meng Tay, Filippo Santarcangelo, Brian E. Bergeron, G. John Schoeffel, Xiaoyan Wang, Li Na Niu, and Xue Cai
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Materials science ,Sodium Hypochlorite ,Root canal ,0206 medical engineering ,02 engineering and technology ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,Pressure ,medicine ,Humans ,Apical extrusion ,Intraosseous pressure ,Therapeutic Irrigation ,General Dentistry ,Root Canal Irrigants ,Atmospheric pressure ,030206 dentistry ,020601 biomedical engineering ,medicine.anatomical_structure ,chemistry ,Needles ,Sodium hypochlorite ,Extrusion ,Root Canal Preparation ,Biomedical engineering - Abstract
The present study examined the effects of irrigant flow rate and simulated intraosseous sinusoidal pressure on the rate of NaOCl extrusion from the apical terminus of a faux root canal.An extrusion setup was designed to enable irrigant extrusion to be opposed by 30 mm Hg simulated intraosseous pressure. The faux canal apex was opposed by atmospheric + 30 mm Hg pressure (experimental) or atmospheric pressure only (control group). Using five irrigant delivery rates (15.6 8.0, 4.0, 3.4 or 3.0 mL/min), the extrusion rates of 2% NaOCl from the faux apex were measured in both groups (n = 16). Data were analysed with two-factor ANOVA and pairwise comparisons at α = 0.05. Correlation between NaOCl delivery rates and extrusion rates in both groups were analysed with the Pearson product-moment procedure.Irrespective of the presence or absence of simulated sinusoidal pressure, NaOCl extrusion rates were positively-correlated with irrigant flow rates. For the factor "irrigant flow rates", significant differences in NaOCl extrusion rates were identified among all flow rates (p 0.05), except for the pairwise comparison between 4.0 and 3.4 mL/min in the control. For all irrigant flow rates, NaOCl extrusion rate was significantly lower in the presence of 30 mm Hg simulated sinusoidal pressure than that obtained in the absence of opposing pressure (p 0.05).In the presence of 30 mm Hg simulated intraosseous pressure, NaOCl delivered via a side-vented needle inserted to 1 mm short of working length may be prevented from extrusion when its flow rate is ≤ 3.0 mL/min.When opposed by intraosseous sinusoidal pressure, NaOCl delivered via a side-vented needle inserted to 1 mm short of working length may be prevented from extrusion when its flow rate is ≤ 3.0 mL/min.
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- 2018
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45. Circulating irisin in patients with polycystic ovary syndrome: a meta-analysis
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Uwe Schumann, Xue Cai, Martina Zügel, Jürgen M. Steinacker, Shanhu Qiu, and Ling Li
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medicine.medical_specialty ,Population ,030209 endocrinology & metabolism ,Cochrane Library ,03 medical and health sciences ,0302 clinical medicine ,Insulin resistance ,Hyperinsulinism ,Internal medicine ,medicine ,Hyperinsulinemia ,Humans ,education ,education.field_of_study ,030219 obstetrics & reproductive medicine ,business.industry ,nutritional and metabolic diseases ,Obstetrics and Gynecology ,medicine.disease ,Polycystic ovary ,Confidence interval ,Fibronectins ,Observational Studies as Topic ,Endocrinology ,Reproductive Medicine ,Meta-analysis ,Glucose Clamp Technique ,Female ,business ,Body mass index ,Polycystic Ovary Syndrome ,Developmental Biology - Abstract
There is growing interest in exploring circulating (plasma/serum) irisin in polycystic ovary syndrome (PCOS) patients. This meta-analysis aimed to summarize the evidence assessing circulating irisin changes in this population. A systematic search was conducted in three databases: PubMed, Cochrane Library and Web of Science, for studies reporting irisin in PCOS patients compared with healthy controls or stratified by body mass index (BMI), or assessing irisin response to hyperinsulinemia. Effect sizes (Cohen's d with 95% confidence intervals [CI]) were calculated using random-effects models. Eight studies with 918 PCOS patients and 528 healthy controls were included. Results showed that circulating irisin was higher in PCOS patients than in overall healthy controls ( d = 0.37, 95% CI 0.05 to 0.70), but not compared with BMI-matched or age- and BMI-matched controls. Circulating irisin was higher in PCOS patients with higher BMI than lower ( d = 0.36, 95% CI 0.16 to 0.56). Circulating irisin decreased 2 h later in response to euglycemic hyperinsulinemia in PCOS patients with a larger magnitude than healthy controls ( d = −0.32, 95% CI −0.53 to −0.11). In summary, with adjustment for BMI, circulating irisin in PCOS patients seems comparable to healthy controls, but its response to hyperinsulinemia might be impaired.
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- 2018
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46. Targeting metabolic driving and minimization of by‐products synthesis for high‐yield production of D‐pantothenate in Escherichia coli
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Bo Li, Zhiqiang Liu, Jie-Yi Jin, Bo Zhang, Xue Cai, Ya-Qun Tang, Pei Wang, Yu-Guo Zheng, and Jin-Xi Liang
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chemistry.chemical_classification ,Shake flask ,Animal food ,Chemistry ,Escherichia coli Proteins ,fungi ,General Medicine ,medicine.disease_cause ,Applied Microbiology and Biotechnology ,Amino acid ,Metabolic engineering ,Metabolic Engineering ,Yield (chemistry) ,Fermentation ,Push and pull ,Escherichia coli ,medicine ,Molecular Medicine ,Food science - Abstract
Background D-Pantothenate (DPA) is an important functional chemical that has been widely applied in healthcare, cosmetics, animal food and feed industries. Methods and results In this study, a high-yield DPA-producing strain was constructed by metabolic engineering strategies with targeting metabolic driving and by-products minimization. The metabolic driving force of push and pull was firstly obtained to improve the production of DPA via enrichment of precursor pool and synthetic pathway, accumulating 4.29 g L-1 DPA in shake flask fermentation. To eliminate the metabolic pressure on DPA production, an amino throttling system was proposed and successfully attenuated the synthesis of four competitive amino acids by a single-step regulation of gdhA. Further minimization of acetate was carried out by pta deletion, and utilization of β-alanine was improved via enhancing its uptake system with producing 5.78 g L-1 DPA. Finally, the engineered strain produced 66.39 g L-1 DPA with β-alanine addition in fermentor under fed-batch fermentation. Conclusion This study paved a foundation for the industrial production of DPA. This article is protected by copyright. All rights reserved.
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- 2021
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47. Glioblastoma: new therapeutic strategies to address cellular and genomic complexity
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Michael E. Sughrue and Xue Cai
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0301 basic medicine ,CRISPR/Cas9 genome editing ,medicine.medical_treatment ,Genetic enhancement ,molecular mechanisms ,Brain tumor ,Review ,Multimodality Therapy ,Bioinformatics ,Brain cancer ,03 medical and health sciences ,0302 clinical medicine ,medicine ,Overall survival ,urogenital system ,business.industry ,glioblastoma ,Immunotherapy ,medicine.disease ,gene therapy ,nervous system diseases ,030104 developmental biology ,Oncology ,030220 oncology & carcinogenesis ,immunotherapy ,business ,Glioblastoma - Abstract
Glioblastoma (GBM) is the most invasive and devastating primary brain tumor with a median overall survival rate about 18 months with aggressive multimodality therapy. Its unique characteristics of heterogeneity, invasion, clonal populations maintaining stem cell-like cells and recurrence, have limited responses to a variety of therapeutic approaches, and have made GBM the most difficult brain cancer to treat. A great effort and progress has been made to reveal promising molecular mechanisms to target therapeutically. Especially with the emerging of new technologies, the mechanisms underlying the pathology of GBM are becoming more clear. The purpose of this review is to summarize the current knowledge of molecular mechanisms of GBM and highlight the novel strategies and concepts for the treatment of GBM.
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- 2017
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48. Association between physical activity and risk of nonalcoholic fatty liver disease: a meta-analysis
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Ling Li, Uwe Schumann, Martina Zügel, Zilin Sun, Xue Cai, Jürgen M. Steinacker, and Shanhu Qiu
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nonalcoholic fatty liver disease ,medicine.medical_specialty ,Population ,Increased physical activity ,Physical activity ,physical activity ,Overweight ,Gastroenterology ,03 medical and health sciences ,0302 clinical medicine ,Insulin resistance ,Internal medicine ,Nonalcoholic fatty liver disease ,medicine ,030212 general & internal medicine ,lcsh:RC799-869 ,education ,Original Research ,education.field_of_study ,business.industry ,Life style ,medicine.disease ,meta-analysis ,Meta-analysis ,030211 gastroenterology & hepatology ,lcsh:Diseases of the digestive system. Gastroenterology ,medicine.symptom ,dose–response ,business - Abstract
Background: Increased physical activity (PA) is a key element in the management of patients with nonalcoholic fatty liver disease (NAFLD); however, its association with NAFLD risk has not been systematically assessed. This meta-analysis of observational studies was to quantify this association with dose–response analysis. Methods: Electronic databases were searched to January 2017 for studies of adults reporting the risk of NAFLD in relation to PA with cohort or case-control designs. Studies that reported sex-specific data were included as separate studies. The overall risk estimates were pooled using a random-effects model, and the dose–response analysis was conducted to shape the quantitative relationship. Results: A total of 6 cohort studies from 5 articles with 32,657 incident NAFLD cases from 142,781 participants, and 4 case-control studies from 3 articles with 382 NAFLD cases and 302 controls were included. Compared with the lowest PA level, the highest PA level was associated with a risk reduction of NAFLD in cohort [RR (risk ratio) 0.79, 95% CI (confidence interval) 0.71–0.89] and case-control studies [OR (odds ratio) 0.43, 95% CI 0.27–0.68]. For cohort studies, both highest and moderate PA levels were superior to the light one in lowering NAFLD risk ( pfor interaction = 0.006 and 0.02, respectively), and there was a log-linear dose–response association ( pfor nonlinearity = 0.10) between PA and NAFLD risk [RR 0.82 (95% CI 0.73–0.91) for every 500 metabolic equivalent (MET)-minutes/week increment in PA]. Conclusions: Increased PA may lead to a reduced risk of NAFLD in a dose-dependent manner, and the current guideline-recommended minimum PA level that approximates to 500 MET-minutes/week is able to moderately reduce the NAFLD risk.
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- 2017
49. Involvement of arterial baroreflex and nicotinic acetylcholine receptor α7 subunit pathway in the protection of metformin against stroke in stroke-prone spontaneously hypertensive rats
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Ding-Feng Su, Lei Wang, Jin-Min Guo, Li Zhang, Ai-Jun Liu, He Shu, Xue-Cai Niu, De-Qiu Zhu, Jian-Jiang Xu, and Ying Zhang
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Male ,0301 basic medicine ,medicine.medical_specialty ,alpha7 Nicotinic Acetylcholine Receptor ,Vesicular Acetylcholine Transport Proteins ,Protein subunit ,Neuroprotection ,Brain Ischemia ,Gene Knockout Techniques ,Mice ,03 medical and health sciences ,0302 clinical medicine ,Rats, Inbred SHR ,Internal medicine ,Vesicular acetylcholine transporter ,medicine ,Animals ,cardiovascular diseases ,Stroke ,Pharmacology ,business.industry ,Arterial baroreflex ,Arteries ,Baroreflex ,medicine.disease ,Metformin ,Rats ,Nicotinic acetylcholine receptor ,Neuroprotective Agents ,030104 developmental biology ,Endocrinology ,Gene Expression Regulation ,cardiovascular system ,Cytokines ,Cholinergic ,Disease Susceptibility ,business ,030217 neurology & neurosurgery ,medicine.drug - Abstract
Stroke is a leading cause of mortality and disability worldwide. There is growing evidence that metformin (Met) has potent neuroprotective effects; however, its mechanisms remain unclear. We examined the role of the arterial baroreflex and cholinergic-α7 nicotinic acetylcholine receptor (α7nAChR) anti-inflammory pathway in the beneficial effects of Met against stroke. Stroke-prone spontaneously hypertensive rats (SHRSP) were used to observe stroke development indicated by lifespan of SHRSP and the ischemic injury induced by permanent middle cerebral artery occlusion (MCAO). Sinoaortic denervation was used to inactivate the arterial baroreflex. MCAO were also performed in α7nAChR knockout (KO) mice. Briefly, Met increased the life span of SHRSP and reduced the infarct area induced by MCAO. Met also improved the function of arterial baroreflex. The beneficial effects of Met on stroke were markedly attenuated by blunting the arterial baroreflex. Met up-regulated the expression of vesicular acetylcholine transporter (VAChT) and α7nAChR, down-regulated the level of pro-inflammtory cytokines in serum and peri-infarct of ischemic brain. Arterial baroreflex dysfunction decreased the expression of VAchT and α7nAChR, showed upward tendency in the level of pro-inflammtory cytokines. Most importantly, arterial baroreflex dysfunction nearly abolished such effect of Met on cholinergic signaling. In addition, the α7nAChR KO mice also had significantly worse ischemic damage induced by MCAO, and neuroprotection of Met disappeared in α7nAChR KO mice. In conclusion, Met improved the arterial baroreflex function, and then enhancing cholinergic anti-inflammatory pathway in an α7nAChR-dependent manner, thereby effectively prevent ischemic induced brain injury and delayed stroke onset in SHRSP.
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- 2017
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50. Upscale production of (R)-mandelic acid with a stereospecific nitrilase in an aqueous system
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Ya-Ping Xue, Chu-Yan Wang, Xin-Hong Zhang, Yu-Guo Zheng, Zhiqiang Liu, and Xue Cai
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0106 biological sciences ,Bioengineering ,medicine.disease_cause ,01 natural sciences ,Nitrilase ,Catalysis ,chemistry.chemical_compound ,Stereospecificity ,Bioreactors ,Aminohydrolases ,010608 biotechnology ,medicine ,Escherichia coli ,Organic chemistry ,Enantiomeric excess ,Aqueous solution ,010405 organic chemistry ,Chemistry ,Water ,Stereoisomerism ,General Medicine ,Hydrogen-Ion Concentration ,Mandelic acid ,Recombinant Proteins ,0104 chemical sciences ,Culture Media ,Biocatalysis ,Fermentation ,Mandelic Acids ,Biotechnology - Abstract
(R)-Mandelic acid (R-MA) is a key precursor for the synthesis of semi-synthetic penicillin, cephalosporin, anti-obesity drugs, antitumor agents, and chiral resolving agents for the resolution of racemic alcohols and amines. In this study, an enzymatic method for the large-scale production of R-MA by a stereospecific nitrilase in an aqueous system was developed. The nitrilase activity of the Escherichia coli BL21(DE3)/pET-Nit whole cells reached 138.6 U/g in a 20,000-L fermentor. Using recombinant E. coli cells as catalyst, 500 mM R,S-mandelonitrile (R,S-MN) was resolved into 426 mM (64.85 g/L) R-MA within 8 h, and the enantiomeric excess (ee) value of R-MA reached 99%. During the purification process, pure R-MA with a recovery rate of 78.8% was obtained after concentration and crystallization. This study paved the foundation for the upscale production of R-MA using E. coli whole cells as biocatalyst.
- Published
- 2019
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