5 results on '"Ornela Bardhi"'
Search Results
2. Early Stage Identification of COVID-19 Patients in Mexico Using Machine Learning: A Case Study for the Tijuana General Hospital
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Cristian Castillo-Olea, Clemente Zuñiga, Ornela Bardhi, Eric Ortiz, Angelica Huerta, Roberto Conte-Galvan, and Alexandra Siono
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Population ,Information technology ,Logistic regression ,Machine learning ,computer.software_genre ,Diabetes mellitus ,medicine ,Stage (cooking) ,education ,education.field_of_study ,machine learning ,COVID-19 ,identification ,Recall ,business.industry ,Contrast (statistics) ,medicine.disease ,T58.5-58.64 ,Obesity ,Artificial intelligence ,medicine.symptom ,business ,Odynophagia ,computer ,Information Systems - Abstract
Background: The current pandemic caused by SARS-CoV-2 is an acute illness of global concern. SARS-CoV-2 is an infectious disease caused by a recently discovered coronavirus. Most people who get sick from COVID-19 experience either mild, moderate, or severe symptoms. In order to help make quick decisions regarding treatment and isolation needs, it is useful to determine which significant variables indicate infection cases in the population served by the Tijuana General Hospital (Hospital General de Tijuana). An Artificial Intelligence (Machine Learning) mathematical model was developed in order to identify early-stage significant variables in COVID-19 patients. Methods: The individual characteristics of the study subjects included age, gender, age group, symptoms, comorbidities, diagnosis, and outcomes. A mathematical model that uses supervised learning algorithms, allowing the identification of the significant variables that predict the diagnosis of COVID-19 with high precision, was developed. Results: Automatic algorithms were used to analyze the data: for Systolic Arterial Hypertension (SAH), the Logistic Regression algorithm showed results of 91.0% in area under ROC (AUC), 80% accuracy (CA), 80% F1 and 80% Recall, and 80.1% precision for the selected variables, while for Diabetes Mellitus (DM) with the Logistic Regression algorithm it obtained 91.2% AUC, 89.2% accuracy, 88.8% F1, 89.7% precision, and 89.2% recall for the selected variables. The neural network algorithm showed better results for patients with Obesity, obtaining 83.4% AUC, 91.4% accuracy, 89.9% F1, 90.6% precision, and 91.4% recall. Conclusions: Statistical analyses revealed that the significant predictive symptoms in patients with SAH, DM, and Obesity were more substantial in fatigue and myalgias/arthralgias. In contrast, the third dominant symptom in people with SAH and DM was odynophagia.
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- 2021
3. Factors Influencing Care Pathways for Breast and Prostate Cancer in a Hospital Setting
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Roberto Nuño-Solinís, Ornela Bardhi, and Begonya Garcia-Zapirain
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Male ,medicine.medical_specialty ,Care process ,lifestyle data ,Hospital setting ,Health, Toxicology and Mutagenesis ,medicine.medical_treatment ,Bone Neoplasms ,Breast Neoplasms ,Article ,Targeted therapy ,03 medical and health sciences ,Prostate cancer ,0302 clinical medicine ,Breast cancer ,breast cancer ,Internal medicine ,medicine ,Humans ,030212 general & internal medicine ,Chemotherapy ,business.industry ,Public Health, Environmental and Occupational Health ,Prostatic Neoplasms ,Bone metastasis ,Prostate-Specific Antigen ,Bisphosphonate ,medicine.disease ,prostate cancer ,Hospitals ,3. Good health ,care pathways ,030220 oncology & carcinogenesis ,treatment lines ,Medicine ,business - Abstract
Breast cancer (BCa) and prostate cancer (PCa) are the most prevalent types of cancers. We aimed to understand and analyze the care pathways for BCa and PCa patients followed at a hospital setting by analyzing their different treatment lines. We evaluated the association between different treatment lines and the lifestyle and demographic characteristics of these patients. Two datasets were created using the electronic health records (EHRs) and information collected through semi-structured one-on-one interviews. Statistical analysis was performed to examine which variable had an impact on the treatment each patient followed. In total, 83 patients participated in the study that ran between January and November 2018 in Beacon Hospital. Results show that chemotherapy cycles indicate if a patient would have other treatments, i.e., patients who have targeted therapy (25/46) have more chemotherapy cycles (95% CI 4.66–9.52, p = 0.012), the same is observed with endocrine therapy (95% CI 4.77–13.59, p = 0.044). Patients who had bisphosphonate (11/46), an indication of bone metastasis, had more chemotherapy cycles (95% CI 5.19–6.60, p = 0.012). PCa patients with tall height (95% CI 176.70–183.85, p = 0.005), heavier (95% CI 85.80–99.57, p <, 0.001), and a BMI above 25 (95% CI 1.85–2.62, p = 0.017) had chemotherapy compared to patients who were shorter, lighter and with BMI less than 25. Initial prostate-specific antigen level (PSA level) indicated if a patient would be treated with bisphosphonate or not (95% CI 45.51–96.14, p = 0.002). Lifestyle variables such as diet (95% CI 1.46–1.85, p = 0.016), and exercise (95% CI 1.20–1.96, p = 0.029) indicated that healthier and active BCa patients had undergone surgeries. Our findings show that chemotherapy cycles and lifestyle for BCa, and tallness and weight for PCa may indicate the rest of treatment plan for these patients. Understanding factors that influence care pathways allow a more person-centered care approach and the redesign of care processes.
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- 2021
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- View/download PDF
4. Deep Learning Models for Colorectal Polyps
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Luis Bujanda, Ornela Bardhi, Daniel Sierra-Sosa, and Begonya Garcia-Zapirain
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medicine.medical_specialty ,Colorectal cancer ,detection ,Information technology ,Convolutional neural network ,localization ,030218 nuclear medicine & medical imaging ,Causes of cancer ,03 medical and health sciences ,0302 clinical medicine ,autoencoders ,medicine ,business.industry ,Deep learning ,deep learning ,Cancer ,T58.5-58.64 ,medicine.disease ,Autoencoder ,3. Good health ,Colon polyps ,colon cancer ,classification ,Late diagnosis ,030220 oncology & carcinogenesis ,Radiology ,Artificial intelligence ,business ,CNN ,Information Systems - Abstract
Colorectal cancer is one of the main causes of cancer incident cases and cancer deaths worldwide. Undetected colon polyps, be them benign or malignant, lead to late diagnosis of colorectal cancer. Computer aided devices have helped to decrease the polyp miss rate. The application of deep learning algorithms and techniques has escalated during this last decade. Many scientific studies are published to detect, localize, and classify colon polyps. We present here a brief review of the latest published studies. We compare the accuracy of these studies with our results obtained from training and testing three independent datasets using a convolutional neural network and autoencoder model. A train, validate and test split was performed for each dataset, 75%, 15%, and 15%, respectively. An accuracy of 0.937 was achieved for CVC-ColonDB, 0.951 for CVC-ClinicDB, and 0.967 for ETIS-LaribPolypDB. Our results suggest slight improvements compared to the algorithms used to date.
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- 2021
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5. Automatic colon polyp detection using Convolutional encoder-decoder model
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Daniel Sierra-Sosa, Ornela Bardhi, Adel Elmaghraby, and Begonya Garcia-Zapirain
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medicine.diagnostic_test ,Colorectal cancer ,Computer science ,business.industry ,Deep learning ,Colonoscopy ,Convolutional neural network ,Pattern recognition ,02 engineering and technology ,medicine.disease ,digestive system diseases ,Colon cancer ,3. Good health ,030218 nuclear medicine & medical imaging ,Colon polyps ,03 medical and health sciences ,0302 clinical medicine ,0202 electrical engineering, electronic engineering, information engineering ,medicine ,020201 artificial intelligence & image processing ,Artificial intelligence ,Encoder decoder ,business - Abstract
Colorectal cancer is a leading cause of cancer deaths, estimated 696 thousand worldwide. Recent years have seen an increase of deep learning techniques and algorithms being used to detect colon polyps. In this work we address colon polyp detection using Convolutional Neural Networks (CNNs) combined with Autoencoders. We use 3 publicly available databases namely: CVC-ColonDB, CVC-ClinicDB and ETIS-LaribPolypDB, to train the model. The results obtained in terms of accuracy are: 0.937, 0.951, 0.967 for the above-mentioned databases respectively. Due to the nature of the colon polyps, diverse shapes and characteristics, there is still place for improvements.
- Published
- 2017
- Full Text
- View/download PDF
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