1. Systems genetics in diversity outbred mice inform BMD GWAS and identify determinants of bone strength
- Author
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Charles R. Farber, Clifford J. Rosen, Larry D. Mesner, Daniel J. Brooks, Steven M. Tommasini, Emily Farber, Kevin Nguyen, Samuel Haddox, Basel M. Al-Barghouthi, Suna Onengut-Gumuscu, Daniel Pomp, Mark C. Horowitz, Gina M. Calabrese, and Mary L. Bouxsein
- Subjects
0301 basic medicine ,Collaborative Cross Mice ,Male ,Osteoporosis ,General Physics and Astronomy ,Datasets as Topic ,Genome-wide association study ,Genome-wide association studies ,Mice ,0302 clinical medicine ,Bone Density ,Osteogenesis ,Oxidoreductases Acting on Sulfur Group Donors ,Femur ,RNA-Seq ,Bone mineral ,Mice, Knockout ,education.field_of_study ,Multidisciplinary ,Cell Differentiation ,Genomics ,Fluoresceins ,medicine.anatomical_structure ,Female ,Single-Cell Analysis ,Science ,Population ,Computational biology ,Biology ,General Biochemistry, Genetics and Molecular Biology ,Article ,03 medical and health sciences ,medicine ,Animals ,Humans ,education ,Genetic association ,Fluorescent Dyes ,Osteoblasts ,Glycosyltransferases ,Mesenchymal Stem Cells ,General Chemistry ,medicine.disease ,Human genetics ,Computational biology and bioinformatics ,030104 developmental biology ,Cortical bone ,human activities ,030217 neurology & neurosurgery ,Genome-Wide Association Study - Abstract
Genome-wide association studies (GWASs) for osteoporotic traits have identified over 1000 associations; however, their impact has been limited by the difficulties of causal gene identification and a strict focus on bone mineral density (BMD). Here, we use Diversity Outbred (DO) mice to directly address these limitations by performing a systems genetics analysis of 55 complex skeletal phenotypes. We apply a network approach to cortical bone RNA-seq data to discover 66 genes likely to be causal for human BMD GWAS associations, including the genes SERTAD4 and GLT8D2. We also perform GWAS in the DO for a wide-range of bone traits and identify Qsox1 as a gene influencing cortical bone accrual and bone strength. In this work, we advance our understanding of the genetics of osteoporosis and highlight the ability of the mouse to inform human genetics., Osteoporosis GWAS faces two challenges, causal gene discovery and a lack of phenotypic diversity. Here, the authors use the Diversity Outbred mouse population to inform human GWAS using networks and map genetic loci for 55 bone traits, identifying new potential bone strength genes.
- Published
- 2021