16 results on '"Labrenz, Matthias"'
Search Results
2. Analysis of environmental microplastics by vibrational microspectroscopy: FTIR, Raman or both?
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Käppler, Andrea, Fischer, Dieter, Oberbeckmann, Sonja, Schernewski, Gerald, Labrenz, Matthias, Eichhorn, Klaus-Jochen, and Voit, Brigitte
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- 2016
- Full Text
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3. A Public Database for Microplastics in the Environment.
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Čerkasova, Natalja, Enders, Kristina, Lenz, Robin, Oberbeckmann, Sonja, Brandt, Josef, Fischer, Dieter, Fischer, Franziska, Labrenz, Matthias, and Schernewski, Gerald
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MICROPLASTICS ,ENVIRONMENTAL policy ,DATABASES ,QUALITY assurance - Abstract
During recent years plastics became one of the focuses of EU policy. A harmonisation and comparability of microplastics monitoring results across Europe is needed. The complexity of microplastic data makes it necessary to develop a specific, tailor-made database rather than adapting and modifying one of the existing databases. To meet this demand, we present a publicly accessible, flexible, and extendable structured relational database for particle-based microplastic data. The developed relational database is adaptive and meets the specific demands of microplastics, e.g., a large variety of sampling, processing and analytical methods, many types of plastics, and a very wide size spectrum ranging from micrometres to millimetres. In this paper we discuss the development of the database, data entry specifics, sample analysis methods, microplastics data manipulation and quality assurance, and database integration and accessibility. [ABSTRACT FROM AUTHOR]
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- 2023
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4. Year-Long Microbial Succession on Microplastics in Wastewater: Chaotic Dynamics Outweigh Preferential Growth.
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Tagg, Alexander S., Sperlea, Theodor, Labrenz, Matthias, Harrison, Jesse P., Ojeda, Jesús J., and Sapp, Melanie
- Abstract
Microplastics are a globally-ubiquitous aquatic pollutant and have been heavily studied over the last decade. Of particular interest are the interactions between microplastics and microorganisms, especially the pursuit to discover a plastic-specific biome, the so-called plastisphere. To follow this up, a year-long microcosm experimental setup was deployed to expose five different microplastic types (and silica beads control) to activated aerobic wastewater in controlled conditions, with microbial communities being measured four times over the course of the year using 16S rDNA (bacterial) and ITS (fungal) amplicon sequencing. The biofilm community shows no evidence of a specific plastisphere, even after a year of incubation. Indeed, the microbial communities (particularly bacterial) show a clear trend of increasing dissimilarity between plastic types as time increases. Despite little evidence for a plastic-specific community, there was a slight grouping observed for polyolefins (PE and PP) in 6–12-month biofilms. Additionally, an OTU assigned to the genus Devosia was identified on many plastics, increasing over time while showing no growth on silicate (natural particle) controls, suggesting this could be either a slow-growing plastic-specific taxon or a symbiont to such. Both substrate-associated findings were only possible to observe in samples incubated for 6–12 months, which highlights the importance of studying long-term microbial community dynamics on plastic surfaces. [ABSTRACT FROM AUTHOR]
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- 2022
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5. Spatial Environmental Heterogeneity Determines Young Biofilm Assemblages on Microplastics in Baltic Sea Mesocosms
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Kesy, Katharina, Oberbeckmann, Sonja, Kreikemeyer, Bernd, and Labrenz, Matthias
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Sphingomonadaceae ,Microbiology (medical) ,microplastics ,Baltic Sea ,lcsh:QR1-502 ,biofilms ,Vibrio ,salinity gradient ,Microbiology ,lcsh:Microbiology ,Original Research - Abstract
Microplastics in aquatic environments provide novel habitats for surface-colonizing microorganisms. Given the continuing debate on whether substrate-specific properties or environmental factors prevail in shaping biofilm assemblages on microplastics, we examined the influence of substrate vs. spatial factors in the development of bacterial assemblages on polyethylene (PE), polystyrene (PS), wood, and seston and in the free-living fraction. Further, the selective colonization of microplastics by potential pathogens was investigated because among the bacterial species found in microplastic-associated biofilms are potentially pathogenic Vibrio spp. Due to their persistence and great dispersal potential, microplastics could act as vectors for these potential pathogens and for biofilm assemblages in general. Incubation experiments with these substrates were conducted for 7 days during a summer cruise along the eastern Baltic Sea coastline in waters covering a salinity gradient of 4.5–9 PSU. Bacterial assemblages were analyzed using 16S rRNA-gene amplicon sequencing, distance-based redundancy analyses, and the linear discriminant analysis effect size method to identify taxa that were significantly more abundant on the plastics. The results showed that the sample type was the most important factor structuring bacterial assemblages overall. Surface properties were less significant in differentiating attached biofilms on PE, PS, and wood; instead, environmental factors, mainly salinity, prevailed. A potential role for inorganic-nutrient limitations in surface-specific attachment was identified as well. Alphaproteobacteria (Sphingomonadaceae, Devosiaceae, and Rhodobacteraceae) and Gammaproteobacteria (Alteromonadaceae and Pseudomonas) were distinctive for the PE- and PS-associated biofilms. Vibrio was more abundant on the PE and PS biofilms than on seston, but its abundances were highest on wood and positively correlated with salinity. These results corroborate earlier findings that microplastics constitute a habitat for biofilm-forming microorganisms distinct from seston, but less from wood. In contrast to earlier reports of low Vibrio numbers on microplastics, these results also suggest that vibrios are early colonizers of surfaces in general. Spatial as well as temporal dynamics should therefore be considered when assessing the potential of microplastics to serve as vectors for bacterial assemblages and putative pathogens, as these parameters are major drivers of biofilm diversity.
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- 2019
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6. Genomic and proteomic profiles of biofilms on microplastics are decoupled from artificial surface properties.
- Author
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Oberbeckmann, Sonja, Bartosik, Daniel, Huang, Sixing, Werner, Johannes, Hirschfeld, Claudia, Wibberg, Daniel, Heiden, Stefan E., Bunk, Boyke, Overmann, Jörg, Becher, Dörte, Kalinowski, Jörn, Schweder, Thomas, Labrenz, Matthias, and Markert, Stephanie
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EUPHOTIC zone ,MICROPLASTICS ,SURFACE properties ,PROTEOMICS ,MARINE habitats ,BIOFILMS ,POLYSTYRENE - Abstract
Summary: Microplastics in marine ecosystems are colonized by diverse prokaryotic and eukaryotic communities. How these communities and their functional profiles are shaped by the artificial surfaces remains broadly unknown. In order to close this knowledge gap, we set up an in situ experiment with pellets of the polyolefin polymer polyethylene (PE), the aromatic hydrocarbon polymer polystyrene (PS), and wooden beads along a coastal to estuarine gradient in the Baltic Sea, Germany. We used an integrated metagenomics/metaproteomics approach to evaluate the genomic potential as well as protein expression levels of aquatic plastic biofilms. Our results suggest that material properties had a minor influence on the plastic‐associated assemblages, as genomic and proteomic profiles of communities associated with the structurally different polymers PE and PS were highly similar, hence polymer‐unspecific. Instead, it seemed that these communities were shaped by biogeographic factors. Wood, on the other hand, induced the formation of substrate‐specific biofilms and served as nutrient source itself. Our study indicates that, while PE and PS microplastics may be relevant in the photic zone as opportunistic colonization grounds for phototrophic microorganisms, they appear not to be subject to biodegradation or serve as vectors for pathogenic microorganisms in marine habitats. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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7. Microplastics alter composition of fungal communities in aquatic ecosystems
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Kettner, Marie Therese, Rojas Jiménez, Keilor Osvaldo, Oberbeckmann, Sonja, Labrenz, Matthias, and Grossart, Hans-Peter
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Fungal communities ,Aquatic ecosystems ,Microplastics ,Institut für Biochemie und Biologie - Abstract
Despite increasing concerns about microplastic (MP) pollution in aquatic ecosystems, there is insufficient knowledge on how MP affect fungal communities. In this study, we explored the diversity and community composition of fungi attached to polyethylene (PE) and polystyrene (PS) particles incubated in different aquatic systems in north‐east Germany: the Baltic Sea, the River Warnow and a wastewater treatment plant. Based on next generation 18S rRNA gene sequencing, 347 different operational taxonomic units assigned to 81 fungal taxa were identified on PE and PS. The MP‐associated communities were distinct from fungal communities in the surrounding water and on the natural substrate wood. They also differed significantly among sampling locations, pointing towards a substrate and location specific fungal colonization. Members of Chytridiomycota, Cryptomycota and Ascomycota dominated the fungal assemblages, suggesting that both parasitic and saprophytic fungi thrive in MP biofilms. Thus, considering the worldwide increasing accumulation of plastic particles as well as the substantial vector potential of MP, especially these fungal taxa might benefit from MP pollution in the aquatic environment with yet unknown impacts on their worldwide distribution, as well as biodiversity and food web dynamics at large. Leibniz Association/[SAW-2014-IOW-2]//Alemania UCR::Vicerrectoría de Docencia::Ciencias Básicas::Facultad de Ciencias::Escuela de Biología
- Published
- 2017
8. Environmental Factors Support the Formation of Specific Bacterial Assemblages on Microplastics.
- Author
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Oberbeckmann, Sonja, Kreikemeyer, Bernd, and Labrenz, Matthias
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PLASTIC marine debris ,POLYSTYRENE - Abstract
While the global distribution of microplastics (MP) in the marine environment is currently being critically evaluated, the potential role of MP as a vector for distinct microbial assemblages or even pathogenic bacteria is hardly understood. To gain a deeper understanding, we investigated how different in situ conditions contribute to the composition and specificity of MP-associated bacterial communities in relation to communities on natural particles. Polystyrene (PS), polyethylene (PE), and wooden pellets were incubated for 2 weeks along an environmental gradient, ranging from marine (coastal Baltic Sea) to freshwater (waste water treatment plant, WWTP) conditions. The associated assemblages as well as the water communities were investigated applying high-throughput 16S rRNA gene sequencing. Our setup allowed for the first time to determine MP-dependent and -independent assemblage factors as subject to different environmental conditions in one system. Most importantly, plastic-specific assemblages were found to develop solely under certain conditions, such as lower nutrient concentration and higher salinity, while the bacterial genus Erythrobacter, known for the ability to utilize polycyclic aromatic hydrocarbons (PAH), was found specifically on MP across a broader section of the gradient. We discovered no enrichment of potential pathogens on PE or PS; however, the abundant colonization of MP in a WWTP by certain bacteria commonly associated with antibiotic resistance suggests MP as a possible hotspot for horizontal gene transfer. Taken together, our study clarifies that the surrounding environment prevailingly shapes the biofilm communities, but that MP-specific assemblage factors exist. These findings point to the ecological significance of specific MP-promoted bacterial populations in aquatic environments and particularly in plastic accumulation zones. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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9. Fate and stability of polyamide-associated bacterial assemblages after their passage through the digestive tract of the blue mussel Mytilus edulis.
- Author
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Kesy, Katharina, Hentzsch, Alexander, Klaeger, Franziska, Oberbeckmann, Sonja, Mothes, Stephanie, and Labrenz, Matthias
- Subjects
MYTILUS edulis ,RIBOSOMAL RNA ,POLYAMIDES ,ALIMENTARY canal ,SPECIES diversity ,BACTERIAL diversity ,PATHOGENIC bacteria - Abstract
We examined whether bacterial assemblages inhabiting the synthetic polymer polyamide are selectively modified during their passage through the gut of Mytilus edulis in comparison to the biopolymer chitin with focus on potential pathogens. Specifically, we asked whether bacterial biofilms remained stable over a prolonged period of time and whether polyamide could thus serve as a vector for potential pathogenic bacteria. Bacterial diversity and identity were analysed by 16S rRNA gene fingerprints and sequencing of abundant bands. The experiments revealed that egested particles were rapidly colonised by bacteria from the environment, but the taxonomic composition of the biofilms on polyamide and chitin did not differ. No potential pathogens could be detected exclusively on polyamide. However, after 7 days of incubation of the biofilms in seawater, the species richness of the polyamide assemblage was lower than that of the chitin assemblage, with yet unknown impacts on the functioning of the biofilm community. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
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10. Polystyrene influences bacterial assemblages in Arenicola marina-populated aquatic environments in vitro.
- Author
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Kesy, Katharina, Oberbeckmann, Sonja, Müller, Felix, and Labrenz, Matthias
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POLYSTYRENE ,PLASTICS & the environment ,ARENICOLA marina ,SEDIMENT microbiology ,BIOFILMS ,AQUATIC ecology ,FOOD chains - Abstract
Plastic is ubiquitous in global oceans and constitutes a newly available habitat for surface-associated bacterial assemblages. Microplastics (plastic particles <5 mm) are especially susceptible to ingestion by marine organisms, as the size of these particles makes them available also to lower trophic levels. Because many marine invertebrates harbour potential pathogens in their guts, we investigated whether bacterial assemblages on polystyrene are selectively modified during their passage through the gut of the lugworm Arenicola marina and are subsequently able to develop pathogenic biofilms. We also examined whether polystyrene acts as a vector for gut biofilm assemblages after subsequent incubation of the egested particles in seawater. Our results showed that after passage through the digestive tract of A. marina , the bacterial assemblages on polystyrene particles and reference glass beads became more similar, harbouring common sediment bacteria. By contrast, only in the presence of polystyrene the potential symbiont Amphritea atlantica was enriched in the investigated biofilms, faeces, and water. Thus, especially in areas of high polystyrene contamination, this polymer may impact the bacterial composition of different habitats, with as yet unknown consequences for the respective ecosystems. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
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11. Marine microplastic-associated biofilms - a review.
- Author
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Oberbeckmann, Sonja, Löder, Martin G. J., and Labrenz, Matthias
- Subjects
PLASTICS & the environment ,BIOFILMS -- Environmental aspects ,MARINE pollution - Abstract
The accumulation of plastic in the marine environment is a long-known issue, but the potential relevance of this pollution for the ocean has been recognised only recently. Within this context, microplastic fragments (<5 mm) represent an emerging topic. Owing to their small size, they are readily ingested by marine wildlife and can accumulate in the food web, along with associated toxins and microorganisms colonising the plastic. We are starting to understand that plastic biofilms are diverse and are, comparably with non-plastic biofilms, driven by a complex network of influences, mainly spatial and seasonal factors, but also polymer type, texture and size of the substratum. Within this context, we should raise the question about the potential of plastic particles to serve as vectors for harmful microorganisms. The main focus of the review is the discussion of first insights and research gaps related to microplastic-associated microbial biofilm communities. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
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12. Research for Sustainable Development.
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Labrenz, Matthias, Duckat, Renate, Thorn, Michaela, and Hollaender, Kirsten
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MARINE pollution ,MARINE ecology ,MARINE resources conservation ,PLASTICS & the environment ,SUSTAINABLE development - Abstract
The article explores the marine environmental problem involving plastic litter worldwide. It highlights the increasing plastic production worldwide, the estimation of the German Federal Environmental Agency on the dumped plastics into the sea and its environmental impact. The significance of the Research for Sustainable Development (FONA) programme in addressing the issue is also emphasized.
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- 2014
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13. Vibrio Colonization Is Highly Dynamic in Early Microplastic-Associated Biofilms as Well as on Field-Collected Microplastics.
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Kesy, Katharina, Labrenz, Matthias, Scales, Brittan S., Kreikemeyer, Bernd, and Oberbeckmann, Sonja
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VIBRIO ,MICROPLASTICS ,BIOFILMS ,COLONIZATION ,METROPOLIS ,BACTERIAL colonies ,POLYSTYRENE - Abstract
Microplastics are ubiquitous in aquatic ecosystems and provide a habitat for biofilm-forming bacteria. The genus Vibrio, which includes potential pathogens, was detected irregularly on microplastics. Since then, the potential of microplastics to enrich (and serve as a vector for) Vibrio has been widely discussed. We investigated Vibrio abundance and operational taxonomic unit (OTU) composition on polyethylene and polystyrene within the first 10 h of colonization during an in situ incubation experiment, along with those found on particles collected from the Baltic Sea. We used 16S rRNA gene amplicon sequencing and co-occurrence networks to elaborate the role of Vibrio within biofilms. Colonization of plastics with Vibrio was detectable after one hour of incubation; however, Vibrio numbers and composition were very dynamic, with a more stable population at the site with highest nutrients and lowest salinity. Likewise, Vibrio abundances on field-collected particles were variable but correlated with proximity to major cities. Vibrio was poorly connected within biofilm networks. Taken together, this indicates that Vibrio is an early colonizer of plastics, but that the process is undirected and independent of the specific surface. Still, higher nutrients could enhance a faster establishment of Vibrio populations. These parameters should be considered when planning studies investigating Vibrio on microplastics. [ABSTRACT FROM AUTHOR]
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- 2021
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14. Small Microplastic Sampling in Water: Development of an Encapsulated Filtration Device.
- Author
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Lenz, Robin and Labrenz, Matthias
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WATER pollution ,PLANKTON ,POLLUTANTS ,SUSTAINABILITY ,FILTERS & filtration - Abstract
A variety of microplastic sampling instrumentation is currently used for water pollution studies. Plankton net-based approaches have been the most adopted techniques for water column and surface sampling. When applied to microplastics (MP) in the lower µm size range these methods, however, introduce non-negligible risks of sample contamination and loss due to instrument and procedure design. Based on the first principles of systems engineering design we have developed a mobile sampling platform for field application that fulfils the needs of producing usable MP samples with a lower size limit of 10 µm using an encapsulated flow-through filtration concept. Here, we explain the requirements, development, and construction of the device for others to replicate and improve. [ABSTRACT FROM AUTHOR]
- Published
- 2018
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15. High-Throughput Analyses of Microplastic Samples Using Fourier Transform Infrared and Raman Spectrometry.
- Author
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Brandt, Josef, Bittrich, Lars, Fischer, Franziska, Kanaki, Elisavet, Tagg, Alexander, Lenz, Robin, Labrenz, Matthias, Brandes, Elke, Fischer, Dieter, and Eichhorn, Klaus-Jochen
- Subjects
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INFRARED spectroscopy , *FOURIER transforms , *PARTICLE size distribution , *PARTICLE analysis , *RAMAN microscopy - Abstract
Determining microplastics in environmental samples quickly and reliably is a challenging task. With a largely automated combination of optical particle analysis, Fourier transform infrared (FT-IR), and Raman microscopy along with spectral database search, particle sizes, particle size distributions, and the type of polymer including particle color can be determined. We present a self-developed, open-source software package for realizing a particle analysis approach with both Raman and FT-IR microspectroscopy. Our software GEPARD (Gepard Enabled PARticle Detection) allows for acquiring an optical image, then detects particles and uses this information to steer the spectroscopic measurement. This ultimately results in a multitude of possibilities for efficiently reviewing, correcting, and reporting all obtained results. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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16. Agricultural application of microplastic-rich sewage sludge leads to further uncontrolled contamination.
- Author
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Tagg, Alexander S., Brandes, Elke, Fischer, Franziska, Fischer, Dieter, Brandt, Josef, and Labrenz, Matthias
- Published
- 2022
- Full Text
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