1. Cell-based assays and molecular simulation reveal that the anti-cancer harmine is a specific matrix metalloproteinase-3 (MMP-3) inhibitor
- Author
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Ke-Wei Liu, Yi-Han Chen, Li-Te Chin, Shu-Ching Hsu, and Lin Huang
- Subjects
Cell Survival ,Antineoplastic Agents ,Matrix metalloproteinase ,Biochemistry ,chemistry.chemical_compound ,Harmine ,Western blot ,Structural Biology ,In vivo ,Tumor Cells, Cultured ,medicine ,Humans ,Enzyme Inhibitors ,Mode of action ,IC50 ,Cell Proliferation ,chemistry.chemical_classification ,medicine.diagnostic_test ,Organic Chemistry ,Molecular biology ,In vitro ,Molecular Docking Simulation ,Computational Mathematics ,Enzyme ,chemistry ,Matrix Metalloproteinase 3 ,Drug Screening Assays, Antitumor - Abstract
The biological activities of harmine have been a much clearer picture in recent years, which include anti-tumor, anti-inflammation and cytotoxic properties. Numerous in vitro and in vivo animal models have confirmed its activities, but its mode of action remains a relative unsolved issue. We therefore investigated harmine for its effects on MMP-3 and the molecular interaction was also simulated. The human glioma cancer cell line, U-87 MG cells, was subjected to different concentrations (1-10 μM) of harmine for 24 h. Methylthiazol tetrazolium (MTT) test, half maximal inhibitory concentration (IC50), western blot analysis, enzyme-linked immunosorbent assay and molecular docking through BIOVIA DiscoveryStudio™ were performed. These results showed that although harmine stimulation in vitro has very little or no effects on MMP-3 expression by U-87 MG cells, the treatment of harmine decreases MMP-3 activity in a dose dependent manner. It was further calculated that 7.9 μM is the IC50 towards MMP-3. Using a molecular dynamic simulation approach, we identified the N2, methyl of C1 and benzene ring of harmine interact with Zn2+ (2.4 A), His205 (2.4 A) and His211 (2.4 A) as well as Val163 (2.7 A) at the active site of MMP-3, respectively, and thus conferred a striking specific binding advantage. Taken altogether, the present study evidences that harmine acts as an MMP-3 inhibitor specially targeting the enzymatic active site and possibly efficiently ameliorates MMP-3-driven malignant and inflammatory diseases.
- Published
- 2021
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