1. BAZ2A safeguards genome architecture of ground‐state pluripotent stem cells
- Author
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Marc W. Schmid, Tuncay Baubec, Raffaella Santoro, Damian Dalcher, Ana C. Marques, Rostyslav Kuzyakiv, Stefan Butz, Valerio Bianchi, Jennifer Y. Tan, Cristiana Bersaglieri, Marcin Roganowicz, Rodrigo Peña-Hernández, Stefan Zeyen, and Eva Vollenweider
- Subjects
Epigenomics ,Pluripotent Stem Cells ,ground‐state embryonic stem cells ,Chromosomal Proteins, Non-Histone ,H3K27me3 ,Cell Cycle Proteins ,Biology ,Regenerative Medicine ,Genome ,Chromatin, Epigenetics, Genomics & Functional Genomics ,General Biochemistry, Genetics and Molecular Biology ,Chromatin remodeling ,Article ,BAZ2A ,Histones ,03 medical and health sciences ,Mice ,0302 clinical medicine ,Compartment (development) ,Animals ,genome organization ,Induced pluripotent stem cell ,Poly-ADP-Ribose Binding Proteins ,Topoisomerase 2A ,Molecular Biology ,030304 developmental biology ,Genomic organization ,Adenosine Triphosphatases ,0303 health sciences ,General Immunology and Microbiology ,Cohesin ,General Neuroscience ,Cell Differentiation ,Mouse Embryonic Stem Cells ,Articles ,Chromatin Assembly and Disassembly ,Embryonic stem cell ,Chromatin ,Cell biology ,DNA Topoisomerases, Type II ,Gene Expression Regulation ,Development & Differentiation ,030217 neurology & neurosurgery - Abstract
Chromosomes have an intrinsic tendency to segregate into compartments, forming long‐distance contacts between loci of similar chromatin states. How genome compartmentalization is regulated remains elusive. Here, comparison of mouse ground‐state embryonic stem cells (ESCs) characterized by open and active chromatin, and advanced serum ESCs with a more closed and repressed genome, reveals distinct regulation of their genome organization due to differential dependency on BAZ2A/TIP5, a component of the chromatin remodeling complex NoRC. On ESC chromatin, BAZ2A interacts with SNF2H, DNA topoisomerase 2A (TOP2A) and cohesin. BAZ2A associates with chromatin sub‐domains within the active A compartment, which intersect through long‐range contacts. We found that ground‐state chromatin selectively requires BAZ2A to limit the invasion of active domains into repressive compartments. BAZ2A depletion increases chromatin accessibility at B compartments. Furthermore, BAZ2A regulates H3K27me3 genome occupancy in a TOP2A‐dependent manner. Finally, ground‐state ESCs require BAZ2A for growth, differentiation, and correct expression of developmental genes. Our results uncover the propensity of open chromatin domains to invade repressive domains, which is counteracted by chromatin remodeling to establish genome partitioning and preserve cell identity., The NoRC chromatin remodeller subunit BAZ2A restricts active chromatin compartments and secures developmental gene expression in ESCs.
- Published
- 2020