1. Simple-to-operate approach for single cell analysis using a hydrophobic surface and nanosized droplets
- Author
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Benjamin Thierry, Lana McClements, Majid Ebrahimi Warkiani, Meysam Rezaei, Payar Radfar, Marnie Winter, Rezaei, Meysam, Radfar, Payar, Winter, Marnie, McClements, Lana, Thierry, Benjamin, and Warkiani, Majid Ebrahimi
- Subjects
Biological studies ,Lysis ,Chemistry ,Microfluidics ,010401 analytical chemistry ,Pipette ,microfluidics ,biological studies ,High-Throughput Nucleotide Sequencing ,Nanotechnology ,RNA analysis ,010402 general chemistry ,Polymerase Chain Reaction ,01 natural sciences ,0104 chemical sciences ,Analytical Chemistry ,law.invention ,Single-cell analysis ,law ,single-cell analysis ,Digital polymerase chain reaction ,Single-Cell Analysis ,Micromanipulator - Abstract
Microfluidics-based technologies for single-cell analysis are becoming increasingly important tools in biological studies. With the increasing sophistication of microfluidics, cellular barcoding techniques, and next-generation sequencing, a more detailed picture of cellular subtype is emerging. Unfortunately, the majority of the methods developed for singlecell analysis are high-throughput and not suitable for rare cell analysis as they require a high input cell number. Here, we report a low-cost and reproducible method for rare single-cell analysis using a highly hydrophobic surface and nanosized static droplets. Our method allows rapid and efficient on-chip single-cell lysis and subsequent collection of genetic materials in nanoliter droplets using a micromanipulator or a laboratory pipette before subsequent genetic analysis. We show precise isolation of single cancer cells with high purity using two different strategies (i- cytospin and ii- static droplet array) for subsequent RNA analysis using droplet digital polymerase chain reaction (PCR) and real-time PCR. Our highly controlled isolation method opens a new avenue for the study of subcellular functional mechanisms, enabling the identification of rare cells of potential functional or pathogenic consequence. Refereed/Peer-reviewed
- Published
- 2021