1. Diagnostic yield of genetic testing in a heterogeneous cohort of 1376 HCM patients
- Author
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Jonna Tallila, Johanna Tommiska, Samuel Myllykangas, Inka Saarinen, Krista Heliö, Pertteli Salmenperä, Eija H. Seppälä, Johanna Sistonen, Tero-Pekka Alastalo, Massimiliano Gentile, Tiina Heliö, Tiia Kangas-Kontio, Jennifer Schleit, Sari Tuupanen, Jussi Paananen, Juha W. Koskenvuo, Miko Valori, Ville Kytola, Hannu Turpeinen, Mikko Muona, Julie Hathaway, HUS Heart and Lung Center, Helsinki University Hospital Area, Clinicum, Department of Medicine, and Doctoral Programme in Clinical Research
- Subjects
Male ,Counseling ,lcsh:Diseases of the circulatory (Cardiovascular) system ,Genetic testing ,Cardiomyopathy ,030204 cardiovascular system & hematology ,0302 clinical medicine ,Risk Factors ,Diagnosis ,Family history ,Child ,0303 health sciences ,education.field_of_study ,medicine.diagnostic_test ,Hypertrophic cardiomyopathy ,3. Good health ,Phenotype ,Child, Preschool ,Cohort ,Female ,Cardiology and Cardiovascular Medicine ,Research Article ,Adult ,Genetic Markers ,medicine.medical_specialty ,Adolescent ,Population ,RASopathy ,Risk Assessment ,Young Adult ,03 medical and health sciences ,Predictive Value of Tests ,Internal medicine ,Next generation sequencing ,medicine ,Humans ,Genetic Predisposition to Disease ,education ,Retrospective Studies ,030304 developmental biology ,business.industry ,Genetic Variation ,Infant ,Cardiomyopathy, Hypertrophic ,medicine.disease ,lcsh:RC666-701 ,3121 General medicine, internal medicine and other clinical medicine ,Etiology ,business - Abstract
BackgroundGenetic testing in hypertrophic cardiomyopathy (HCM) is a published guideline-based recommendation. The diagnostic yield of genetic testing and corresponding HCM-associated genes have been largely documented by single center studies and carefully selected patient cohorts. Our goal was to evaluate the diagnostic yield of genetic testing in a heterogeneous cohort of patients with a clinical suspicion of HCM, referred for genetic testing from multiple centers around the world.MethodsA retrospective review of patients with a suspected clinical diagnosis of HCM referred for genetic testing at Blueprint Genetics was undertaken. The analysis included syndromic, myopathic and metabolic etiologies. Genetic test results and variant classifications were extracted from the database. Variants classified as pathogenic (P) or likely pathogenic (LP) were considered diagnostic.ResultsA total of 1376 samples were analyzed. Three hundred and sixty-nine tests were diagnostic (26.8%); 373 P or LP variants were identified. Only one copy number variant was identified. The majority of diagnostic variants involved genes encoding the sarcomere (85.0%) followed by 4.3% of diagnostic variants identified in the RASopathy genes. Two percent of diagnostic variants were in genes associated with a cardiomyopathy other than HCM or an inherited arrhythmia. Clinical variables that increased the likelihood of identifying a diagnostic variant included: an earlier age at diagnosis (p p p p = 0.0002), and the presence of an implantable cardioverter-defibrillator (ICD) (p = 0.0004).ConclusionThe diagnostic yield of genetic testing in this heterogeneous cohort of patients with a clinical suspicion of HCM is lower than what has been reported in well-characterized patient cohorts. We report the highest yield of diagnostic variants in the RASopathy genes identified in a laboratory cohort of HCM patients to date. The spectrum of genes implicated in this unselected cohort highlights the importance of pre-and post-test counseling when offering genetic testing to the broad HCM population.
- Published
- 2021