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Background: The nitrogen (N) cycle consists of complex microbe-mediated transformations driven by a variety of factors, including diversity and concentrations of N compounds. In this study, we examined taxonomic diversity and N substrate utilization by heterotrophic bacteria isolated from streams under complex and simple N-enrichment conditions., Results: Diversity estimates differed among isolates from the enrichments, but no significant composition were detected. Substrate utilization and substrate range of bacterial assemblages differed within and among enrichments types, and not simply between simple and complex N-enrichments., Conclusions: N substrate use patterns differed between isolates from some complex and simple N-enrichments while others were unexpectedly similar. Taxonomic composition of isolates did not differ among enrichments and was unrelated to N use suggesting strong functional redundancy. Ultimately, our results imply that the available N pool influences physiology and selects for bacteria with various abilities that are unrelated to their taxonomic affiliation.

Simple nitrogen (N) input/output balance calculations in agricultural systems are used to evaluate performance of nutrient management; however, they generally rely on extensive assumptions that do not consider leaching, denitrification, or annual depletion of soil N. We constructed a relatively complete N mass balance for the Big Ditch watershed, an extensively tile-drained agricultural watershed in east-central Illinois. We conducted direct measurements of a wide range of N pools and fluxes for a 2-yr period, including soil N mineralization, soybean N(2) fixation, tile and river N loads, and ground water and in-stream denitrification. Fertilizer N inputs were from a survey of the watershed and yield data from county estimates that were combined with estimated protein contents to obtain grain N. By using maize fertilizer recovery and soybean N(2) fixation to estimate total grain N derived from soil, we calculated the explicit change in soil N storage each year. Overall, fertilizer N and soybean N(2) fixation dominated inputs, and total grain export dominated outputs. Precipitation during 2001 was below average (78 cm), whereas precipitation in 2002 exceeded the 30-yr average of 97 cm; monthly rainfall was above average in April, May, and June of 2002, which flooded fields and produced large tile and riverine N loads. In 2001, watershed inputs were greater than outputs, suggesting that carryover of N to the subsequent year may occur. In 2002, total inputs were less than outputs due to large leaching losses and likely substantial field denitrification. The explicit change in soil storage (67 kg N ha(-1)) offsets this balance shortfall. Although 2002 was climatically unusual, with current production trends of greater maize grain yields with less fertilizer N, soil N depletion is likely to occur in maize/soybean rotations, especially in years with above-average precipitation or extremely wet spring periods.

Denitrification is an important process in aquatic sediments, but its role has not been assessed in the N mass balance of upper-Midwestern (USA) reservoirs that receive large agricultural riverine N inputs. We used a 4400-ha reservoir to determine the role of denitrification in the N mass balance and effectiveness in reducing downstream transport of NO(3-)N. Sediment denitrification was (1) measured monthly (March 2002-March 2003) at eight sites in the Lake Shelbyville reservoir in central Illinois using the acetylene inhibition, chloramphenicol technique, (2) scaled to the overall reservoir and compared to N not accounted for in a mass balance, and (3) estimated indirectly using long-term (1981-2003) mass balances of N in the reservoir. Denitrification rates in the reservoir were high during spring and early summer of 2002, when maximum NO(3-)N concentrations were measured (10-14 mg NO(3-)N/L). We estimated that denitrification for the year was between 2580 and 5150 Mg N. Missing N from the mass balance was 3004 Mg N, suggesting that sediment denitrification was the sink. Areal rates of sediment denitrification in the reservoir ranged from 62 to 225 g N x m(-2) x yr(-1), with rates a function of both denitrification intensity (microg N x g dry mass x h(-1)) and the overall mass of sediment present. From 1981 to 2003 the average NO(3-)N inlet flux was 8900 Mg N/yr. About 58% of the total NO(3-)N input was removed, and annual NO(3-)N removed as a percentage of inputs was significantly related to reservoir retention time (average = 0.36 yr for the 23 years, range = 0.21-0.84 yr). By scaling denitrification in Lake Shelbyville to other reservoirs in Illinois, we estimated a sink of 48900 Mg N/yr. When combined with estimated in-stream denitrification, 60900 Mg N/yr was estimated to be removed by sediment denitrification. This reduces riverine export from Illinois to the Gulf of Mexico, where the flux during the 1990s was about 244000 Mg N/yr, and illustrates the importance of reservoir denitrification as an N sink in Midwestern agricultural landscapes.

A better understanding of the controls on algae and dissolved O2 in agricultural streams of Illinois is needed to aid in development of nutrient standards. We investigated the relationships between dissolved nutrients, algal abundance, and dissolved O2 in five streams in east-central Illinois from March through November 2004. The streams drained watersheds from 25 to 777 km2 that were dominated by row crop agriculture. Three sites had open canopies and two were bordered by a narrow forest of deciduous trees. Algal abundance was measured as chlorophyll-a (chl-a) concentration in the water column (sestonic) and on the streambed (periphytic). Mean NO3-N concentrations ranged from 5.5 to 8.8 mg N L(-1) and did not relate to algal abundance. Sestonic chl-a values ranged from nearly zero to >15 mg m(-3) with no differences between open and shaded streams and only a weak correlation with dissolved reactive P (mean concentrations were 44-479 microg L(-1)). The results suggest that sestonic chl-a is a poor criterion for assessing nutrient-related problems in these streams. Greatest periphytic chl-a occurred during low flow from August through October, but periphyton occurred consistently in only two of the five streams. The abundance of filamentous algae explained 64% of the variation in diel O2 saturation, but was not correlated with nutrients. Currently it appears that hydrology and light, rather than nutrients, control algal abundance in these streams, and in the agricultural landscape of east-central Illinois, it may not be possible to reduce nutrient concentrations sufficiently to limit filamentous algal blooms.

The Midwest has large riverine exports of nitrogen (N), with the largest flux per unit area to the Mississippi River system coming from Iowa and Illinois. We used historic and current data to estimate N inputs, outputs, and transformations for Illinois where human activity (principally agriculture and associated landscape drainage) have had a dominant impact. Presently, approximately 800,000 Mg of N is added each year as fertilizer and another 420,000 Mg is biologically fixed, primarily by soybean (Glycine max L. Merr.). These annual inputs are greater than exports in grain, which results in surplus N throughout the landscape. Rivers within the state export approximately 50% of this surplus N, mostly as nitrate, and the remainder appears to be denitrified or temporarily incorporated into the soil organic matter pool. The magnitude of N losses for 1880, 1910, 1950, and 1990 are compared. Initial cultivation of the prairies released large quantities of N (approximately 500,000 Mg N year(-1)), and resulted in riverine N transport during the late 19th century that appears to have been on the same order of magnitude as contemporary N losses. Riverine flux was estimated to have been at a minimum in about 1950, due to diminished net mineralization and low fertilizer inputs. Residual fertilizer N from corn (Zea mays L.), biological N fixed by soybean, short-circuiting of soil water through artificial drainage, and decreased cropping-system diversity appear to be the primary sources for current N export.