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Microbial communities driving the nitrogen cycle contribute to ecosystem services such as crop production and air, soil, and water quality. The responses to herbicide stress of ammonia-oxidizing and ammonia-denitrifying microbial communities were investigated by an analysis of changes in structure-function relationships. Their potential activities, abundances (quantitative PCR), and genetic structure (denaturing gradient gel electrophoresis) were assessed in a microcosm experiment. The application rate (1 × FR, 0.45 μg g(-1) soil) of the mesotrione herbicide did not strongly affect soil N-nutrient dynamics or microbial community structure and abundances. Doses of the commercial product Callisto® (10 × FR and 100 × FR) or pure mesotrione (100 × FR) exceeding field rates induced short-term inhibition of nitrification and a lasting stimulation of denitrification. These effects could play a part in the increase in soil ammonium content and decrease in nitrate contents observed in treated soils. These functional impacts were mainly correlated with abundance shifts of ammonia-oxidizing Bacteria (AOB) and Archaea (AOA) or denitrifying bacteria. The sustained restoration of nitrification activity, from day 42 in the 100 × FR-treated soils, was likely promoted by changes in the community size and composition of AOB, which suggests a leading role, rather than AOA, for soil nitrification restoration after herbicide stress. This ecotoxicological community approach provides a nonesuch multiparameter assessment of responses of N-cycling microbial guilds to pesticide stress.

Microbial communities have a central role in ecosystem processes by driving the Earth's biogeochemical cycles. However, the importance of microbial diversity for ecosystem functioning is still debated. Here, we experimentally manipulated the soil microbial community using a dilution approach to analyze the functional consequences of diversity loss. A trait-centered approach was embraced using the denitrifiers as model guild due to their role in nitrogen cycling, a major ecosystem service. How various diversity metrics related to richness, eveness and phylogenetic diversity of the soil denitrifier community were affected by the removal experiment was assessed by 454 sequencing. As expected, the diversity metrics indicated a decrease in diversity in the 1/10(3) and 1/10(5) dilution treatments compared with the undiluted one. However, the extent of dilution and the corresponding reduction in diversity were not commensurate, as a dilution of five orders of magnitude resulted in a 75% decrease in estimated richness. This reduction in denitrifier diversity resulted in a significantly lower potential denitrification activity in soil of up to 4-5 folds. Addition of wheat residues significantly increased differences in potential denitrification between diversity levels, indicating that the resource level can influence the shape of the microbial diversity-functioning relationship. This study shows that microbial diversity loss can alter terrestrial ecosystem processes, which suggests that the importance of functional redundancy in soil microbial communities has been overstated.

Climate change causes droughts, which in turn cause significant physiological stress for soil microorganisms. In this study, we investigated how the abundance of total bacterial, crenarchaeal and fungal communities and the abundance of N-cycling microbial guilds responded to a severe agricultural drought event in a long-term experiment of minimum tillage (MT) and conventional ploughing (CT) at two soil depths. Drought, defined as a reduction of soil water content and increased soil temperature, significantly decreased the abundance of all the studied microbial communities. The data showed linear relationships between all dependent variables and soil water content and soil temperature for the examined range of soil water content (WHC 13–76%) and examined range of average daily soil temperature at 5 cm depth (17–30 °C). Thus, we found that the abundance of most studied microbial communities decreased by about 2% when water content decreased by 1 mass % and by about 10% when temperature increases by 1 °C. When comparing communities at average soil water content and average soil temperature, MT had higher average abundances of total bacterial and crenarchaeal 16S rRNA and fungal ITS genes in the 0–10 cm soil layer than did CT (1.9, 2.9 and 2.5 times, respectively), as well as AOA and AOB amoA (3.9 and 1.7 times, respectively), nirK , nirS , nosZ I and nosZ II genes (2.0, 1.8, 1.8 and 2.3 times, respectively); while significant differences between MT and CT in the 10–20 cm soil layer were found only in the average abundance of crenarchaeal 16S rRNA and crenarchaeal amoA genes (3.5 and 2.7 times greater under MT than CT). Regardless of the weather conditions during our study, the abundances of all communities were greater under MT 0–10 than under CT 0–10. After three weeks of severe drought, the greatest decrease in the abundance of all communities, bacterial and archaeal N-cycling guilds as well as total prokaryotes and fungi, was observed under MT 0–10. However, after only a few rainfall events, all communities under both tillage systems reached their initial abundance, demonstrating a high resilience. [ABSTRACT FROM AUTHOR]