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The owlet moths (Noctuoidea; ~43–45K described species) are one of the most ecologically diverse and speciose superfamilies of animals. Moreover, they comprise some of the world's most notorious pests of agriculture and forestry. Despite their contributions to terrestrial biodiversity and impacts on ecosystems and economies, the evolutionary history of Noctuoidea remains unclear because the superfamily lacks a statistically robust phylogenetic and temporal framework. We reconstructed the phylogeny of Noctuoidea using data from 1234 genes (946.4 kb nucleotides) obtained from the genome and transcriptome sequences of 76 species. The relationships among the six families of Noctuoidea were well resolved and consistently recovered based on both concatenation and gene coalescence approaches, supporting the following relationships: Oenosandridae + (Notodontidae + (Erebidae + (Nolidae + (Euteliidae + Noctuidae)))). A Yule tree prior with three unlinked molecular clocks was identified as the preferred BEAST analysis using marginal‐likelihood estimations. The crown age of Noctuoidea was estimated at 74.5 Ma, with most families originating before the end of the Paleogene (23 Ma). Our study provides the first statistically robust phylogenetic and temporal framework for Noctuoidea, including all families of owlet moths, based on large‐scale genomic data. [ABSTRACT FROM AUTHOR]

Gracillariidae is the most taxonomically diverse cosmopolitan leaf‐mining moth family, consisting of nearly 2000 named species in 105 described genera, classified into eight extant subfamilies. The majority of gracillariid species are internal plant feeders as larvae, creating mines and galls in plant tissue. Despite their diversity and ecological adaptations, their phylogenetic relationships, especially among subfamilies, remain uncertain. Genomic data (83 taxa, 589 loci) were integrated with Sanger data (130 taxa, 22 loci), to reconstruct a phylogeny of Gracillariidae. Based on analyses of both datasets combined and analyzed separately, monophyly of Gracillariidae and all its subfamilies, monophyly of the clade "LAMPO" (subfamilies: Lithocolletinae, Acrocercopinae, Marmarinae, Phyllocnistinae, and Oecophyllembiinae) and relationships of its subclade "AMO" (subfamilies: Acrocercopinae, Marmarinae, and Oecophyllembiinae) were strongly supported. A sister‐group relationship of Ornixolinae to the remainder of the family, and a monophyletic leaf roller lineage (Callicercops Vári + Parornichinae) + Gracillariinae, as sister to the "LAMPO" clade were supported by the most likely tree. Dating analyses indicate a mid‐Cretaceous (105.3 Ma) origin of the family, followed by a rapid diversification into the nine subfamilies predating the Cretaceous–Palaeogene extinction. We hypothesize that advanced larval behaviours, such as making keeled or tentiform blotch mines, rolling leaves and galling, allowed gracillariids to better avoid larval parasitoids allowing them to further diversify. Finally, we stabilize the classification by formally re‐establishing the subfamily ranks of Marmarinae stat.rev., Oecophyllembiinae stat.rev. and Parornichinae stat.rev., and erect a new subfamily, Callicercopinae Li, Ohshima and Kawahara to accommodate the enigmatic genus Callicercops. [ABSTRACT FROM AUTHOR]

The Bombyliinae comprises over 1100 described species in 73 known genera distributed worldwide. It is one of the largest subfamilies of bee flies (Diptera: Bombyliidae). We present the first phylogenetic hypothesis for this subfamily, based on 157 adult morphological characters scored for 123 species representing 60 genera, including all the tribes of Bombyliinae, and the related subfamilies Lordotinae and Toxophorinae. Four most parsimonious trees were generated from our analysis under equal weighting schemes. The monophyly of Bombyliinae is supported, and Lordotinae is sister to the Bombyliinae. Within Bombyliinae, Conophorini is sister to the remaining tribes. Five previously recognized tribes are revised and four new tribes are erected. We placed almost all genera in our tribal classification, based on our phylogenetic results and available character evidence. The genus Parabombylius is proposed as a synonym of Bombylius. The Gondwanan origin for the major lineages of Bombyliinae is strongly indicated by our biogeographic analysis which reconstructs ancestral areas. This published work has been registered in ZooBank, http://zoobank.org/urn:lsid:zoobank.org:pub:1EC5C827‐34D5‐4A95‐BA78‐4ACF457F6D40. [ABSTRACT FROM AUTHOR]

A new genus of bee fly (Bombyliinae: Bombyliini) is described to place a unique species Paramonovius nightking gen. et sp. nov. The new species is only collected in winter and is only known from a restricted area in Western Australia. Our morphological phylogeny indicates the new genus is sister to Sisyromyia White, 1916 and is similar to the latter in some external characters such as the one‐segmented antennal flagellum with apical stylus, subapex with 3–5 long hairs, open cell r5 and cell br nearly as long as cell bm. However, Paramonovius gen. nov. has dichoptic male eyes, sparse scales on the median abdominal stripe, enlarged claw and pulvillus, as well as a series of autapomorphies in the genitalia. We present a modified key to the Australian genera of Bombyliini to accommodate this new genus. The unusual flight time of this genus may have contributed to its rarity in collections. [ABSTRACT FROM AUTHOR]

Macalpinomyia jiewenaegen. et sp.n. is described from the mid‐Cretaceous (∼99 Ma) amber of Myanmar. Macalpinomyia jiewenae is the first Oriental representative of the enigmatic family Ironomyiidae (Diptera: Phoroidea), currently known from a single extant genus restricted to southeastern Australia, plus a monotypic genus from Canadian amber and three controversial genera based on impression fossils from China, Mongolia and Russia. A phylogenetic analysis of all Phoroidea families, including all ironomyiid extant and extinct genera, corroborates the monophyly of Ironomyiidae, and Macalpinomyiagen.n. is assigned to the subfamily Sinolestinae. Cretonomyiinae subfam.n., is erected to accommodate the basal lineage of Ironomyiidae. Lebambromyia acrai Grimaldi & Cumming, previously placed in Ironomyiidae, is supported as an early branching lineage of Platypezidae. Our topology proposes that Ironomyiidae is sister to the remaining Phoroidea. The phylogenetic results, in combination with the fossil ages and relevant molecular divergence time analysis, suggests that Ironomyiidae probably originated at least in the Berriasian of the Early Cretaceous (∼140 Ma). This published work has been registered in ZooBank, http://zoobank.org/urn:lsid:zoobank.org:pub:5DFFC944‐1350‐418E‐BCDC‐BB87FC013D5D. Ironomyiidae (Diptera: Phoroidea) is described from the mid‐Cretaceous (∼ 99 Ma) amber of Myanmar for the first time with Macalpinomyia jiewenaegen. et sp.n.A phylogenetic analysis of all Phoroidea families, including all ironomyiid genera, supports the monophyly of Ironomyiidae and suggests that Ironomyiidae is sister to the remaining Phoroidea.The relationships within Ironomyiidae are reconstructed, and Cretonomyiinae subfam.n. is erected to accommodate the basal lineage of the Ironomyiidae. [ABSTRACT FROM AUTHOR]

Brachycera is a clade with over 80,000 described species and originated from the Mesozoic, and its larvae employ comprehensive feeding strategies. The phylogeny of the lower Brachycera has been studied intensively over the past decades. In order to supplement the lack of genetic data in this important group, we sequenced the complete mitochondrial (mt) genome of Atylotus miser as well as the nearly complete mt genomes of another 11 orthorrhaphous flies. The mt genome of A. miser is 15,858 bp, which is typical of Diptera, with 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes and a 993 bp control region. The rest of the orthorrhaphous mt genomes in our study have the similar structure with A. miser . Additionally, we conducted a phylogenetic analysis of 20 mt genomes using Maximum-likelihood and Bayesian methods in order to reconstruct the evolutionary relationship of Orthorrhapha. The results show that all infraorders of Brachycera are monophyletic, and a relationship of Tabanomorpha + ((Xylophagomorpha + Stratiomyomorpha) + Muscomorpha) has been proposed. Within Xylophagomorpha, Nemestrinoidae forms the sister group of Xylophagidae. [ABSTRACT FROM AUTHOR]

Chloropidae, commonly known as grass flies, represent the most taxonomically diverse family of Diptera Carnoidea, comprising over 3000 described species worldwide. Previous phylogenetic studies of this family have predominantly relied on morphological characters, with mitochondrial genomes being reported in a few species. This study presents 11 newly sequenced mitochondrial genomes (10 Chloropidae and 1 Milichiidae) and provides the first comprehensive comparative analysis of mitochondrial genomes for Chloropidae. Apart from 37 standard genes and the control region, three conserved intergenic sequences across Diptera Cyclorrhapha were identified in all available chloropid mitochondrial genomes. Evolutionary rates within Chloropidae exhibit significant variation across subfamilies, with Chloropinae displaying higher rates than the other three subfamilies. Phylogenetic relationships based on mitochondrial genomes were inferred using maximum likelihood and Bayesian methods. The monophyly of Chloropidae and all four subfamilies is consistently strongly supported, while subfamily relationships within Chloropidae remain poorly resolved, possibly due to rapid evolution. [ABSTRACT FROM AUTHOR]

Simple Summary: The genus Homoneura is the most speciose genus of Lauxaniidae. However, no phylogenetic study of Homoneura has been published using morphological data, despite the high diversity and ecological significance. Therefore, we present the first morphological phylogeny of Homoneura. The monophyly of the genus Homoneura and the subgenus Homoneura is not supported. The monophyly of the subgenera Euhomoneura and Neohomoneura is supported, as well as the sister relationship between the subgenera Chaetohomoneura and Neohomoneura. These results provide a comprehensive framework and information toward future research of this genus. The genus Homoneura comprises over 700 described species in eight known subgenera distributed worldwide and has the highest species richness of Lauxaniidae. Five subgenera and more than 200 species have currently been recorded from China. Despite its high diversity, the monophyly of Homoneura and its subgenera, and the phylogenetic relationships among its subgenera remain to be investigated. One maximum-parsimony tree was generated based on 105 morphological characters scored from 24 species, representing all five subgenera of Homoneura recorded from China. The results did not support the monophyly of the genus Homoneura and subgenus Homoneura. The subgenus Chaetohomoneura is a sister to subgenus Neohomoneura. The monophyly of the subgenera Euhomoneura and Neohomoneura is supported. Much of the current classification of the genus Homoneura needs a revision before taxonomy can reflect natural groupings. [ABSTRACT FROM AUTHOR]

A traditionally controversial taxon, the Tipulomorpha has been frequently discussed with respect to both its familial composition and relationships with other Nematocera. The interpretation of internal relationships within the Tipuloidea, which include the Tipulidae sensu stricto, Cylindrotomidae, Pediciidae and Limoniidae, is also problematic. We sequenced the first complete mitochondrial (mt) genome of Symplecta hybrida (Meigen, 1804), which belongs to the subfamily Chioneinae of family Limoniidae, and another five nearly complete mt genomes from the Tipuloidea. We did a comparative analysis of these mt genomics and used them, along with some other representatives of the Nematocera to construct phylogenetic trees. Trees inferred by Bayesian methods strongly support a sister-group relationship between Trichoceridae and Tipuloidea. Tipulomorpha are not supported as the earliest branch of the Diptera. Furthermore, phylogenetic trees indicate that the family Limoniidae is a paraphyletic group. [ABSTRACT FROM AUTHOR]