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The monocot family Cyclanthaceae (Pandanales) comprises ca. 230 known species in 12 genera restricted to the Neotropics. The family has not been the subject of a species‐level molecular phylogenetic study to date, with multiple evolutionary and biogeographic questions about Cyclanthaceae still unanswered. In this study, we address genus‐ and species‐level relationships and the historical biogeography of Cyclanthaceae based on a broadly sampled molecular phylogeny. Two low‐copy nuclear genes (phyC, rpb2) and five plastid regions (atpB‐rbcL, psbA‐trnH, trnL‐trnF, trnQ‐rps16, matK) representing 99 species and all genera of Cyclanthaceae were sampled, spanning the taxonomic and biogeographic diversity of the family. Our results strongly support the monophyly of all Cyclanthaceae genera and confirm previously proposed hypotheses of intergeneric relationships. Infrageneric relationships are generally well supported, with some exceptions in the genus Asplundia that may require a broader sampling to clarify. The early diversification of Cyclanthaceae is estimated to date back to the Paleocene‐Eocene period in South America, where the family possibly arrived through a boreotropical route. The origin of most genera is inferred from the Paleocene of the Tumbes‐Chocó‐Magdalena region, possibly indicating an earlier origin for this biodiversity hotspot. The current distribution of Cyclanthaceae is likely to have been strongly influenced by major biogeographical events in the Neotropics, such as the uplift of the Andes and the opening of the South America dry diagonal. Further studies that include a broader sample of the large Asplundia‐Dicranopygium clade and Sphaeradenia group are required. [ABSTRACT FROM AUTHOR]

• A novel multilocus and highly supported phylogeny clarify several previously uncertain relationships in Myrcia. • Our results provide a solid backbone for further evolutionary and taxonomic work. • Previously unplaced Myrcia species formed a new circumscribed clade. • The first phylogenetic relationships for Myrcia sect. Gomidesia are shown with a morphological trait evolution and geographic range distribution approaches. • The inclusion of previously available molecular data with novel sequences of Myrcia and relatives significantly improved our phylogenetic estimates. Myrcia is the largest exclusively Neotropical genus of the plant family Myrtaceae with c. 770 species. Although several studies have elucidated the relationships within particular sections of the genus, to date no phylogeny has been produced that includes a broad taxonomic and geographic representation. Here we present a phylogenetic hypothesis of Myrcia and close relatives comprising 253 species and based on two nuclear and seven plastid markers. We combine previously available sequence data with 234 new sequences of the genus Myrcia for this study. We use this phylogeny to investigate the evolution of selected morphological traits and to infer the biogeographic history of the genus. Our results yield a highly supported phylogenetic tree where the Myrceugenia group is sister to the Myrcia and Plinia groups. Five Myrcia species previously considered unplaced emerge in a newly circumscribed clade. The monophyly of two Myrcia sections previously considered uncertain, Aulomyrcia and Gomidesia, are confirmed with strong support. Flowers with free calyx lobes, 2-locular ovaries, and anthers with symmetrical thecae are ancestral features of Myrcia. The Myrcia sect. Gomidesia is highly supported and recovered as monophyletic, with asymmetric anthers that retain their curvature after dehiscence as a morphological synapomorphy. The Atlantic Forest is the most likely ancestral area of the genus and most of its internal clades, from where multiple lineages colonized different regions of South and Central America, in particular the Brazilian Cerrado through multiple unidirectional range expansions. The southern Atlantic Forest is the ancestral area for Myrcia sect. Gomidesia , with lineages reaching the northern Atlantic Forest, Cerrado, Yungas, and other savanna vegetation of South America. Our results provide a solid backbone for further evolutionary and taxonomic work and clarify several previously uncertain relationships in this mega-diverse plant group, and shed light on its geographical range evolution. [ABSTRACT FROM AUTHOR]