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Coastal ecosystems are strongly influenced by terrestrial inputs of freshwater, sediments, and nutrients, particularly in a megariver estuary of the Changjiang River. A remarkable increase in nutrient loading from the Changjiang River to the shelf has been observed over the period from 1999 to 2016 and turned the region into a high eutrophication condition. The Finite‐Volume Community Ocean Model and the European Regional Seas Ecosystem Model were coupled to assess the impact of the nutrient loading on the interannual variability of nutrients and phytoplankton. The model was first validated via observational data, and then dynamical analysis were conducted. Singular vector decomposition analysis indicated that the rapid change of local ecosystem was highly correlated with the change in river nutrient contributions. The Changjiang estuarine ecosystem was phosphate limited. The phosphate exhibited local variation, while the abundant nitrate from the river was diluted by the low‐nitrate oceanic water. The suspended sediment was significantly correlated with phytoplankton but not with nutrients. The ratio of diatom biomass to dinoflagellate biomass respected a rapid response to strong oscillations in the river nutrient input. High diatom primary production occurred near the sediment front, whereas the dinoflagellate bloom extended significantly offshore. The spring diatom and dinoflagellate blooms had major peaks in the empirical orthogonal function Modes 1 and 2, and the autumn bloom is characterized by secondary peaks from Mode 2 in the autumn. Plain Language Summary: There was an increase in the nutrient input into the Changjiang Estuary with an increased use of agricultural fertilizer as food demand rises globally. Further, there will be additional changes to river and estuary fluxes due to global anthropogenic activities in the future. This study presented the results of a novel coupled physical‐biogeochemical model which was designed to examine the seasonal and interannual variability of nutrients and phytoplankton dynamics in the Changjiang Estuary over the period of 1999–2016. The variations of nutrient source from the Changjiang Estuary in the last 18 years had been identified. The model demonstrated that this estuary ecosystem had a rapid response to the changes in riverine nutrients. The total nutrient concentrations, as well as their fluxes of the system, had similar variation patterns with river discharge, indicating that the river was the principal source of nutrients for the nearshore and offshore regions in that area. The phytoplankton population in terms of the ratio between diatoms and dinoflagellates responded quickly to changes in river nutrient fluxes. Key Points: Physical and biogeochemical models have been coupled to study pelagic planktonic ecosystem variability in a river estuary systemConsequences of changing nutrient fluxes over the last 18 years into the estuary on nutrient biogeochemistry and plankton were studiedPelagic ecosystem responded rapidly to river discharge and nutrient flux but exhibited different patterns for nutrients and phytoplankton [ABSTRACT FROM AUTHOR]

Atmospheric deposited nitrogen (AD-N) approximates or exceeds riverine input in many coastal ecosystems, such as the Bohai Sea (BHS) which is one of the most eutrophic coastal waters in China. We construct a three-dimensional (3D) physical-biogeochemical model to understand the influence of atmospheric dissolved inorganic nitrogen (DIN) on the intra- and inter-annual variations of phytoplankton blooms and nutrient dynamics in the BHS. The biological component, which is coupled to the Regional Ocean Modelling System (ROMS), is a simple but widely used Nutrient-Phytoplankton-Zooplankton-Detritus (NPZD) model with eight state variables. The model simulation successfully reproduces the spatial and temporal variations of observed DIN and dissolved inorganic phosphorus (DIP) and the climatological features of phytoplankton biomasses (chlorophyll a ), which confirms the major role of air-transported nutrients in controlling standing stocks and nutrient limitations. The modelling results show that the relative contributions of deposited nitrogen to the total DIN in the seawater for the Bohai, Laizhou and Liaodong Bays and Central Bohai Basin reach 84.8%, 49.3%, 37.4% and 44.4% on average, respectively. The relative contribution ratio is approximately 54% for the entire Bohai region, causing a 56.5% increase in the phytoplankton biomass on average. These results also indicate that the effects of AD-N on nutrient and phytoplankton dynamics vary widely in regional areas because of the uneven spatial distribution of nitrogen deposition fluxes and also partially because of the hydrodynamic conditions, shortwave radiation and water temperatures. [ABSTRACT FROM AUTHOR]

High-turbidity water is a common feature in the estuary and inner shelf. Sediment suspension functions as a modulator that directly influences the interactions among nutrients, phytoplankton and other related ecosystem variables. A physical-biological coupling model system was applied to examine the impact of sediment front on interactions among on suspended sediment, vertical mixing, nutrients and phytoplankton over the inner shelf off the high-turbidity, phosphate-limited Changjiang Estuary. The physical model was the Finite-Volume Community Ocean Model (FVCOM) and the biological model was the European Regional Seas Ecosystem Model (ERSEM). Results revealed that in the nearshore region the growth of phytoplankton over the spring-summer seasons was limited by suspended sediments and intensified vertical mixing during the autumn-winter seasons extended the sediment-induced suppression extended offshore to restrict the phytoplankton growth over the shelf. Nutrients were diluted by spreading of freshwater discharge and significantly decreased off the suspended sediment front due to the depletion by the offshore phytoplankton growth. The simulation results showed that although the diatom phytoplankton dominated the Chlorophyll a (Chl- a) concentration, the non-diatom group had a more contribution to the biomass. The relatively high phytoplankton biomass was found over the offshore deep underwater valley area as results of remote advection by the Taiwan Warm Current and weak turbulent mixing. • Physical-biogeochemical model was developed to study sediment-ecosystem interaction. • Model revealed high nutrients within the front and dense Chl a out of the front. • Chl a was mainly from diatom, however non-diatom group contributed more on biomass. [ABSTRACT FROM AUTHOR]