8 results on '"Barnaby E. Walker"'
Search Results
2. <scp>r</scp> WCVP: a companion R package for the World Checklist of Vascular Plants
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Matilda J. M. Brown, Barnaby E. Walker, Nicholas Black, Rafaël H. A. Govaerts, Ian Ondo, Robert Turner, and Eimear Nic Lughadha
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Physiology ,Plant Science - Published
- 2023
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3. Molecules from nature: Reconciling biodiversity conservation and global healthcare imperatives for sustainable use of medicinal plants and fungi
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Thomas A.K. Prescott, Alex Battison, Namrita Lall, Monique S. J. Simmonds, Andrew Farlow, Ermias Lulekal, María‐Elena Cazar, Cassandra L. Quave, Eimear Nic Lughadha, Félix Forest, William Milliken, Liping Li, Christine Leon, China Williams, Juri Felix, Marco Nuno De Canha, Malin C. Rivers, Elizabeth Bell, Barnaby E. Walker, Bob Allkin, Evangelos C. Tatsis, Melanie-Jayne R. Howes, Danielle Twilley, Haining Qin, Cathie Martin, Jérôme Collemare, Carlos A. Vásquez-Londoño, and Danna J. Leaman
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lcsh:GE1-350 ,business.industry ,Biodiversity ,Societal impact of nanotechnology ,Forestry ,Plant Science ,Horticulture ,Essential medicines ,drug discovery ,lcsh:QK1-989 ,phylogenetics ,biosynthetic pathways ,lcsh:Botany ,herbal medicine ,Threatened species ,Health care ,Sustainability ,Global health ,pharmaceutical ,Business ,Natural capital ,Environmental planning ,lcsh:Environmental sciences ,Ecology, Evolution, Behavior and Systematics ,medicinal plants - Abstract
Societal Impact Statement Plants and fungi have provided, or inspired, key pharmaceuticals for global health challenges, including cancer, heart disease, dementia, and malaria, and are valued as traditional medicines worldwide. Global demand for medicinal plants and fungi has threatened certain species, contributing to biodiversity loss and depletion of natural resources that are important for the health of humanity. We consider the evolving role of plants and fungi in global healthcare as new challenges to human health and to biodiversity arise. We present current and emerging scientific approaches, to uncover and preserve nature‐based health solutions for the future, through harmonization with biodiversity conservation strategies. Summary Non‐communicable diseases, including cardiovascular disease, cancer, and diabetes, are the main causes of deaths globally, and communicable diseases such as malaria and tuberculosis affect billions of people. Plants and fungi have provided key pharmaceuticals in our armory against these global health challenges, while in some regions of the world, they continue to have a central role in healthcare systems as traditional medicines. Consequently, global demand for plants and fungi in healthcare has threatened certain medicinal species, and is a driving factor in biodiversity loss. Yet the future of therapeutics from nature is evolving. Scientific advances are enabling the untapped potential of the world's plants and fungi to be explored for their medicinal value, and to reveal other roles they may have for improving health and well‐being; this demonstrates the value of natural capital as an incentive for biodiversity conservation. Emerging technologies also offer new hope for safeguarding essential medicines for the future, by revealing more sustainable solutions for sourcing key natural products. This review discusses recent developments and future approaches for the discovery of natural products as medicines, for health and well‐being, and strategies to harmonize the therapeutic use of biodiversity with its proactive conservation through nature‐based solutions.
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- 2020
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4. Harnessing Large-Scale Herbarium Image Datasets Through Representation Learning
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Barnaby E. Walker, Allan Tucker, and Nicky Nicolson
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digitized herbarium specimens ,machine learning ,natural history collections ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,Plant culture ,deep learning ,Plant Science ,computer vision ,SB1-1110 ,Original Research - Abstract
Copyright © 2022 Walker, Tucker and Nicolson. The mobilization of large-scale datasets of specimen images and metadata through herbarium digitization provide a rich environment for the application and development of machine learning techniques. However, limited access to computational resources and uneven progress in digitization, especially for small herbaria, still present barriers to the wide adoption of these new technologies. Using deep learning to extract representations of herbarium specimens useful for a wide variety of applications, so-called “representation learning,” could help remove these barriers. Despite its recent popularity for camera trap and natural world images, representation learning is not yet as popular for herbarium specimen images. We investigated the potential of representation learning with specimen images by building three neural networks using a publicly available dataset of over 2 million specimen images spanning multiple continents and institutions. We compared the extracted representations and tested their performance in application tasks relevant to research carried out with herbarium specimens. We found a triplet network, a type of neural network that learns distances between images, produced representations that transferred the best across all applications investigated. Our results demonstrate that it is possible to learn representations of specimen images useful in different applications, and we identify some further steps that we believe are necessary for representation learning to harness the rich information held in the worlds’ herbaria. Research/Scientific Computing teams at the James Hutton Institute and NIAB for providing computational resources and technical support for the “UK’s Crop Diversity Bioinformatics HPC” (BBSRC grant BB/S019669/1).
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- 2022
5. New scientific discoveries: Plants and fungi
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Brian Looney, Theo Llewellyn, Eimear Nic Lughadha, Khoon Meng Wong, Martin Cheek, Heather Lindon, Pedro W. Crous, Rafaela Campostrini Forzza, Kevin D. Hyde, Paul M. Kirk, Barnaby E. Walker, Julia Carretero, Yusufjon Gafforov, A. Martyn Ainsworth, Mark Hughes, Tuula Niskanen, Brian Douglas, Ester Gaya, Danny Haelewaters, Westerdijk Fungal Biodiversity Institute - Evolutionary Phytopathology, and Westerdijk Fungal Biodiversity Institute
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PHYLOGENETIC POSITION ,properties of new species ,FABACEAE ,AMARYLLIDACEAE ,Laboulbeniales ,Ecology (disciplines) ,Biodiversity ,Plant Science ,Horticulture ,DISEASE ,GENUS ,Genus ,lcsh:Botany ,Taxonomic rank ,lcsh:Environmental sciences ,Ecology, Evolution, Behavior and Systematics ,DNA versus morphology ,lcsh:GE1-350 ,LABOULBENIALES ,biology ,Ecology ,rates of discovery of plants and fungi ,Biology and Life Sciences ,Graphidaceae ,Forestry ,Fabaceae ,biology.organism_classification ,lcsh:QK1-989 ,Taxon ,Geography ,LICHENIZED ASCOMYCOTA ,BIODIVERSITY ,extinction before scientific discovery ,discovery ,GRAPHIDACEAE ,TAXONOMIC REVISION - Abstract
Societal Impact Statement Research and publication of the planet's remaining plant and fungal species as yet unknown to science is essential if we are to address the United Nations Sustainable Development Goal (SDG) 15 “Life on Land” which includes the protection of terrestrial ecosystems and halting of biodiversity loss. If species are not known to science, they cannot be assessed on the International Union for Conservation of Nature (IUCN) Red List of Threatened Species and so the possibility to protect them from extinction is reduced. Furthermore, until species are known to science they cannot be fully scientifically evaluated for their potential as new foods, medicines, and products which would help address SDGs 1,2,3, and 8. Summary Scientific discovery, including naming new taxa, is important because without a scientific name, a species is invisible to science and the possibilities of researching its ecology, applications and threats, and conserving it, are greatly reduced. We review new scientific discoveries in the plant and fungal kingdoms, based largely on new names of taxa published in 2019 and indexed in the International Plant Names Index and Index Fungorum. Numbers of new species in both kingdoms were similar with 1942 new species of plant published and 1882 species of fungi. However, while >50% of plant species have likely been discovered, >90% of fungi remain unknown. This gulf likely explains the greater number of higher order taxa for fungi published in 2019: three classes, 18 orders, 48 families and 214 genera versus one new family and 87 new genera for plants. We compare the kingdoms in terms of rates of scientific discovery, globally and in different taxonomic groups and geographic areas, and with regard to the use of DNA in discovery. We review species new to science, especially those of interest to humanity as new products, and also by life‐form. We consider where future such discoveries can be expected. We recommend an urgent increase in investment in scientific discovery of plant and fungal species, while they still survive. Priorities include more investment in training taxonomists, in building and equipping collections‐based research centers for them, especially in species‐rich, income‐poor countries where the bulk of species as yet unknown to science are thought to occur.
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- 2020
6. Botanical Monography in the Anthropocene
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Lúcia G. Lohmann, A. Muthama Muasya, Oscar Alejandro Pérez-Escobar, Eve Lucas, Maria S. Vorontsova, Sebsebe Demissew, Tiina Särkinen, Barnaby E. Walker, Eimear Nic Lughadha, Sandra Knapp, Sandra Díaz, Alexandre K. Monro, Gwilym P. Lewis, Yannick Woudstra, Olwen M. Grace, Iain Darbyshire, Peter Wilkie, William J. Baker, and Alexandre Antonelli
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BIODIVERSIDADE ,0106 biological sciences ,0301 basic medicine ,Conservation of Natural Resources ,Best practice ,CONSERVATION ,Biodiversity ,Tree of life ,Plant Science ,SYSTEMATICS ,TREE OF LIFE ,Biology ,01 natural sciences ,CLASSIFICATION ,purl.org/becyt/ford/1 [https] ,03 medical and health sciences ,Anthropocene ,PLANTS ,purl.org/becyt/ford/1.6 [https] ,Environmental planning ,Plant diversity ,Potential impact ,TAXONOMY ,Plants ,030104 developmental biology ,Sustainability ,PATTERNS ,BIODIVERSITY ,POACEAE ,TAXONOMIC IMPEDIMENT ,010606 plant biology & botany - Abstract
Unprecedented changes in the Earth's biota are prompting urgent efforts to describe and conserve plant diversity. For centuries, botanical monographs — comprehensive systematic treatments of a family or genus — have been the gold standard for disseminating scientific information to accelerate research. The lack of a monograph compounds the risk that undiscovered species become extinct before they can be studied and conserved. Progress towards estimating the Tree of Life and digital information resources now bring even the most ambitious monographs within reach. Here, we recommend best practices to complete monographs urgently, especially for tropical plant groups under imminent threat or with expected socioeconomic benefits. We also highlight the renewed relevance and potential impact of monographies for the understanding, sustainable use, and conservation of biodiversity. Fil: Grace, Olwen M.. Royal Botanic Gardens, Kew; Reino Unido Fil: Pérez-Escobar, Oscar A.. Royal Botanic Gardens, Kew; Reino Unido Fil: Lucas, Eve J.. Royal Botanic Gardens, Kew; Reino Unido Fil: Vorontsova, Maria S.. Royal Botanic Gardens, Kew; Reino Unido Fil: Lewis, Gwilym P.. Royal Botanic Gardens, Kew; Reino Unido Fil: Walker, Barnaby E.. Royal Botanic Gardens, Kew; Reino Unido Fil: Lohmann, Lúcia G.. Universidade de Sao Paulo; Brasil Fil: Knapp, Sandra. Natural History Museum; Reino Unido Fil: Wilkie, Peter. Royal Botanic Gardens; Reino Unido Fil: Sarkinen, Tiina. Royal Botanic Gardens; Reino Unido Fil: Darbyshire, Iain. Royal Botanic Gardens; Reino Unido Fil: Lughadha, Eimear Nic. Royal Botanic Gardens; Reino Unido Fil: Monro, Alexandre. Royal Botanic Gardens; Reino Unido Fil: Woudstra, Yannick. Universidad de Copenhagen; Dinamarca. Royal Botanic Gardens; Reino Unido Fil: Demissew, Sebsebe. Addis Ababa University; Etiopía Fil: Muasya, A. Muthama. University Of Cape Town; Sudáfrica Fil: Díaz, Sandra Myrna. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Córdoba. Instituto Multidisciplinario de Biología Vegetal. Universidad Nacional de Córdoba. Facultad de Ciencias Exactas Físicas y Naturales. Instituto Multidisciplinario de Biología Vegetal; Argentina Fil: Baker, William J.. Royal Botanic Gardens, Kew; Reino Unido Fil: Antonelli, Alexandre. University of Oxford; Reino Unido. University Goteborg; Suecia
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- 2020
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7. Caution Needed When Predicting Species Threat Status for Conservation Prioritization on a Global Scale
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Tarciso C. C. Leão, Friederike C. Bolam, Eimear Nic Lughadha, Barnaby E. Walker, and Steven P. Bachman
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Prioritization ,transparency ,Opinion ,conservation ,extinction risk ,Plant Science ,lcsh:Plant culture ,IUCN Red List ,Geography ,machine learning ,Scale (social sciences) ,lcsh:SB1-1110 ,Environmental planning ,automation - Published
- 2020
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8. Extinction risk and threats to plants and fungi
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Henintsoa Razanajatovo, Gregory M. Mueller, Tarciso C. C. Leão, Eric de Camargo Smidt, Karen L. Bacon, Peter M. Hollingsworth, Paloma G.P. Moore, Gildas Gâteblé, Elton John de Lírio, Gwilym P. Lewis, Eimear Nic Lughadha, Raquel Negrão, Peter B. Reich, Rafaël Govaerts, Félix Forest, Carmen Acedo, Alexandre Antonelli, Justin Moat, Sophie L. Richards, Susana C. Gonçalves, Malin C. Rivers, Landy Rajaovelona, Steven P. Bachman, Jean Michel Onana, João Ricardo Vieira Iganci, Ryan F.A. Brewer, Barnaby E. Walker, Amanda Cooper, Irmgard Krisai-Greilhuber, and John M. Halley
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lcsh:GE1-350 ,Extinction ,Global Strategy for Plant Conservation (GSPC) Target 2 ,phylogenetic diversity (PD) ,Ecology ,automated conservation assessments ,extinction risk ,Forestry ,Plant Science ,Horticulture ,extinction debt ,International Union for Conservation of Nature (IUCN) Red List of Threatened Species ,lcsh:QK1-989 ,Geography ,biodiversity loss ,lcsh:Botany ,lcsh:Environmental sciences ,Ecology, Evolution, Behavior and Systematics ,Extinction debt - Abstract
Societal Impact Statement There is increasing awareness that plants and fungi, as natural solutions, can play an important role in tackling ongoing global environmental challenges. We illustrate how understanding current and projected threats to plants and fungi is necessary to manage and mitigate risks, while building awareness of gaps and bias in current assessment coverage is essential to adequately prioritize conservation efforts. We highlight the state of the art in conservation science and point to current methods of assessment and future studies needed to mitigate species extinction. Summary Plant and fungal biodiversity underpin life on earth and merit careful stewardship in an increasingly uncertain environment. However, gaps and biases in documented extinction risks to plant and fungal species impede effective management. Formal extinction risk assessments help avoid extinctions, through engagement, financial, or legal mechanisms, but most plant and fungal species lack assessments. Available global assessments cover c. 30% of plant species (ThreatSearch). Red List coverage overrepresents woody perennials and useful plants, but underrepresents single‐country endemics. Fungal assessments overrepresent well‐known species and are too few to infer global status or trends. Proportions of assessed vascular plant species considered threatened vary between global assessment datasets: 37% (ThreatSearch), and 44% (International Union for Conservation of Nature Red List of Threatened Species). Our predictions, correcting for several quantifiable biases, suggest that 39% of all vascular plant species are threatened with extinction. However, other biases remain unquantified, and may affect our estimate. Preliminary trend data show plants moving toward extinction. Quantitative estimates based on plant extinction risk assessments may understate likely biodiversity loss: they do not fully capture the impacts of climate change, slow‐acting threats, or clustering of extinction risk, which could amplify loss of evolutionary potential. The importance of extinction risk estimation to support existing and emerging conservation initiatives is likely to grow as threats to biodiversity intensify. This necessitates urgent and strategic expansion of efforts toward comprehensive and ongoing assessment of plant and fungal extinction risk.
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- 2020
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