1. Mutant analysis in the non‐legume Parasponia andersonii identifies NIN and NF‐YA1 transcription factors as a core genetic network in nitrogen‐fixing nodule symbioses
- Author
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Arjan van Zeijl, Olga Kulikova, Luuk Rutten, René Geurts, Fengjiao Bu, Marta Rodriguez-Franco, Yuda Purwana Roswanjaya, Thomas Ott, and Ton Bisseling
- Subjects
0106 biological sciences ,0301 basic medicine ,Physiology ,Nitrogen ,Frankia ,Mutant ,Organogenesis ,Plant Science ,01 natural sciences ,Plant Root Nodulation ,Rhizobia ,03 medical and health sciences ,rhizobium ,Symbiosis ,Nitrogen Fixation ,evolution ,Laboratorium voor Moleculaire Biologie ,Gene Regulatory Networks ,nodulation ,Gene ,Plant Proteins ,Genetics ,Endosymbiosis ,biology ,Full Paper ,Research ,intracellular infection ,Parasponia ,NODULE INCEPTION (NIN) ,Full Papers ,biology.organism_classification ,030104 developmental biology ,Rhizobium ,Laboratory of Molecular Biology ,NF‐YA1 ,Root Nodules, Plant ,NF-YA1 ,010606 plant biology & botany ,Transcription Factors - Abstract
Nitrogen‐fixing nodulation occurs in ten taxonomic lineages, either with rhizobia or Frankia bacteria. To establish such an endosymbiosis, two processes are essential: nodule organogenesis and intracellular bacterial infection. In the legume‐rhizobium endosymbiosis, both processes are guarded by the transcription factor NODULE INCEPTION (NIN) and its downstream target genes of the NUCLEAR FACTOR Y (NF‐Y) complex. It is hypothesized that nodulation has a single evolutionary origin ~ 110 million years ago, followed by many independent losses. Despite a significant body of knowledge of the legume‐rhizobium symbiosis, it remains elusive which signalling modules are shared between nodulating species in different taxonomic clades. We used Parasponia andersonii to investigate the role of NIN and NF‐YA genes in rhizobium nodulation in a non‐legume system. Consistent with legumes, P. andersonii PanNIN and PanNF‐YA1 are co‐expressed in nodules. By analyzing single, double and higher‐order CRISPR‐Cas9 knockout mutants, we show that nodule organogenesis and early symbiotic expression of PanNF‐YA1 are PanNIN‐dependent and that PanNF‐YA1 is specifically required for intracellular rhizobium infection. This demonstrates that NIN and NF‐YA1 commit conserved symbiotic functions. As Parasponia and legumes diverged soon after the birth of the nodulation trait, we argue that NIN and NF‐YA1 represent core transcriptional regulators in this symbiosis.
- Published
- 2020