Search

Limited information exists on the global economic impact of glyphosate-resistant (GR) weeds. The objective of this manuscript was to estimate the potential yield and economic loss from uncontrolled GR weeds in the major field crops grown in Ontario, Canada. The impact of GR weed interference on field crop yield was determined using an extensive database of field trials completed on commercial farms in southwestern Ontario between 2010 and 2021. Crop yield loss was estimated by expert opinion (weed scientists and Ontario government crop specialists) when research data were unavailable. This manuscript assumes that crop producers adjust their weed management programs to control GR weeds, which increases weed management costs but reduces crop yield loss from GR weed interference by 95%. GR volunteer corn, horseweed, waterhemp, giant ragweed, and common ragweed would cause an annual monetary loss of (in millions of Can$) $172, $104, $11, $3, and $0.3, respectively, for a total annual loss of $290 million if Ontario farmers did not adjust their weed management programs to control GR biotypes. The increased herbicide cost to control GR volunteer corn, horseweed, waterhemp, giant ragweed, and common ragweed in the major field crops in Ontario is estimated to be (in millions of Can$) $17, $9, $2, $0.1, and $0.02, respectively, for a total increase in herbicide expenditures of $28 million annually. Reduced GR weed interference with the adjusted weed management programs would reduce farm-gate monetary crop loss by 95% from $290 million to $15 million. This study estimates that GR weeds would reduce the farm-gate value of the major field crops produced in Ontario by Can$290 million annually if Ontario farmers did not adjust their weed management programs, but with increased herbicide costs of Can$28 million and reduced crop yield loss of 95% the actual annual monetary loss in Ontario is estimated to be Can$43 million annually.

Cultivation of lowbush blueberry (Vaccinium angustifolium Aiton), an important crop in the eastern part of North America, is unique, as it is carried out over the course of two consecutive growing seasons. Pest management, particularly weed management, is impacted by this biennial cultural practice. The choice of methods to control weeds is narrow, and such a system relies heavily on herbicides for weed management. Availability of unique herbicide active ingredients for weed management is limited, and available herbicides are used repeatedly, so the risk of developing resistance is acute. Hair fescue (Festuca filiformis Pourr.), a perennial grass weed, has evolved resistance to hexazinone, a photosystem II inhibitor frequently used in lowbush blueberry production. We show that substitution of phenylalanine to isoleucine at position 255 is responsible for a decreased sensitivity to hexazinone by a factor of 6.12. Early diagnosis of resistance based on the detection of the mutation will alert growers to use alternative control methods and thus help to increase the sustainability of the cropping system.

Frequent cultivation is often used to control weeds in crops such as lettuce. The efficacy of this technique on weed populations has been evaluated, but the effect on weed emergence and seedbanks is less documented. Studies in mineral soil indicate that soil disturbance can increase both weed emergence and seed persistence depending on where seeds are redistributed in the soil profile. Evaluations done in muck soil are scarce. This study evaluated the effect of two and four repetitive shallow (3.4 to 7.1 cm deep) cultivations on weed emergence and the weed seedbank in muck soil. Cultivation treatments (0, 2, and 4 cultivations using a inter-row rototiller) were done in lettuce plots from 2017 to 2019. Weed density was evaluated by species before each cultivation date and after crop harvest. Viable seedbanks were evaluated by collecting soil samples before and after each growing season and placing them in greenhouse flats. Statistical analyses were based on mixed models. Results showed that shallow cultivation modified the emergence patterns of weeds but did not reduce total emergence during the subsequent years or viable seedbanks. After two seasons without seed inputs, total emergence was reduced by 46.6% and the seedbank was reduced by 31.7% regardless of the cultivation treatment. However, the seedbank of the very abundant common purslane (Portulaca oleracea) remained high.

The full spectrum of herbicide resistance in a weed can vary according to the mechanistic basis and cannot be implied from the selective pressure. Common ragweed (Ambrosia artemisiifolia L.) is an important weed species of horticultural crops that has developed resistance to linuron based on either target site– or non–target site resistance mechanisms. The objective of the study is to characterize the cross-resistance to metribuzin of linuron-selected biotypes of A. artemisiifolia with target site– and non–target site resistance and determine its genetic basis. Crosses were made between two types of linuron-resistant biotype and a linuron-susceptible biotype, and the progeny were further backcrossed with susceptible plants to the third backcross (BC3) generation to determine their responses to both herbicides compared with parental lines. The target site–based linuron-resistant biotype was cross-resistant to metribuzin, and resistance to both herbicides was maintained at the same level in the BC3 line. In contrast, the linuron-selected biotype with a non–target site resistance mechanism was not cross-resistant to metribuzin. In addition, the BC3 lines deriving from the non–target site resistant parents had very low-level resistance. While the target site–resistance trait is maintained through multiple crosses, non–target site based resistance would be lost over time when selection is absent or insufficient to retain all genes involved in resistance as a complex trait. This would imply A. artemisiifolia biotypes with different mechanisms would need to be managed differently over time.

Palmer amaranth is one of the most economically important and widespread weeds of arable land in the United States. Although no populations are currently known to exist in Canada, its distribution has expanded northward such that it is present in many of the states bordering Canada and multiple pathways exist for its introduction. In this short communication, we report on the transport of viable Palmer amaranth seed on imported sweet potato slips. A reproductive pair of Palmer amaranth seedlings were identified from soil accompanying imported sweet potato slips in 2018. Identification was confirmed using species-specific single nucleotide polymorphisms.

Photosystem II (PS II)-inhibitor herbicide resistance in Ontario waterhemp [Amaranthus tuberculatus (Moq.) Sauer] populations is conferred via target-site resistance (TSR) and non–target site resistance (NTSR) mechanisms. Metribuzin-resistant (MR) A. tuberculatus is due to TSR. Conversely, in other populations of PS II–inhibitor resistant A. tuberculatus, plants are resistant to atrazine but metribuzin sensitive (MS). The objective of this study was to determine the biologically effective dose of metribuzin applied preemergence and postemergence for the control of MS and MR A. tuberculatus. Ten field experiments were conducted in 2019 and 2020 to determine the effective doses of metribuzin for 50%, 80%, and 95% control of MS and MR A. tuberculatus. Metribuzin applied preemergence at the calculated doses of 133, 350, and 1,070 g ai ha−1 controlled MS A. tuberculatus 50%, 80%, and 95%, respectively, whereas the calculated doses of 7,868 and 17,533 g ai ha−1 controlled MR A. tuberculatus 50% and 80%, respectively, at 12 wk after application (WAA). Metribuzin applied postemergence at the calculated doses of 245 and 1,480 g ai ha−1 controlled MS A. tuberculatus 50% and 80%, respectively; the calculated dose for 50% MR A. tuberculatus control was greater than the highest dose (17,920 g ai ha−1) included in this study. Metribuzin at 560 and 1,120 g ha−1 and pyroxasulfone/flumioxazin (240 g ai ha−1) applied preemergence controlled MS A. tuberculatus 88%, 95%, and 98%, respectively, at 12 WAA, whereas the same treatments only controlled MR A. tuberculatus 0%, 4%, and 93%, respectively, at 12 WAA. Metribuzin at 560 and 1,120 g ha−1 and fomesafen (240 g ai ha−1) applied postemergence controlled MS A. tuberculatus 65%, 70%, and 78%, and MR A. tuberculatus 0%, 1%, and 49%, respectively, at 12 WAA. Based on these results, PS II–inhibitor resistant A. tuberculatus with NTSR (enhanced metabolism) is controlled with metribuzin applied preemergence and postemergence; in contrast, PS II–inhibitor resistant A. tuberculatus with TSR (glycine-264-serine altered target site) is not controlled with metribuzin.

This is the first record of protoporphyrinogen oxidase (PPO) inhibitor resistance in eastern Canada, and the second record of a glyphosate-resistant weed in Quebec. In 2016 and 2017, waterhemp seed was collected from 25 locations across Ontario and Quebec. All populations tested positive for imazethapyr resistance. Three-way resistance to imazethapyr, atrazine, and glyphosate was confirmed in 80% of the samples. Additionally, between 2015 and 2017, waterhemp seed was collected from 74 locations in Ontario or Quebec and resistance to lactofen was confirmed in 28% of the seed lots screened.

Herbicide resistance is selected for within a weed population through the recurrent use of an herbicide. Once the use of the herbicide is reduced or discontinued, the trait may persist in the population unless resistance endows a fitness penalty. Few studies have examined the long-term persistence of an herbicide resistance trait in a weed population once the selection pressure that led to its prevalence has been removed. The objective of this research was to re-survey the locations described by A.J.J. Smisek in her 1995 study of a paraquat resistant biotype of C. canadensis on the grounds of the Harrow Research and Development Centre. Results indicate that, ∼20 yr after paraquat use was significantly reduced, a glyphosate resistant biotype had replaced the paraquat resistant biotype at all but one of the original locations surveyed by Smisek. The sole location where the paraquat resistant biotype was observed was an old, un-treed orchard row currently managed by mowing. This location not only served as a refuge for the paraquat resistant biotype, ensuring its persistence in the face of strong selection for glyphosate resistance at all other locations, but it facilitated the co-occurrence of glyphosate and paraquat resistant biotypes. The observation of a multiple resistant biotype at this location alone, with resistance to both paraquat and glyphosate, suggests a role for refugia in the stacking of herbicide resistance traits. Given that this stacking occurred in the absence of either herbicide, we hypothesize that the multiple resistant biotype arose through pollen mediated gene flow among biotypes.

Cover cropping is a soil conservation practice that may reduce the impacts of the economically important pathogen Pseudomonas syringae on crops including squash (Cucurbita pepo). To date, no studies have directly quantified the effect of rye cover crops on P. syringae populations, nor on the bacterial community of squash leaves. In this work, we tested the hypothesis that the protective effects of cover cropping on squash may be mediated by cover cropping effects on the plant’s microbiota that in turn protects against P. syringae. Using combined 16S sequencing and culture-based approaches, we showed that rye cover cropping protects squash against P. syringae, by decreasing pathogen population size on squash leaves and increasing fruit health and marketability at harvest. We also found evidence of a strong effect of rye cover crops on bacterial communities of the squash phyllosphere. Those findings were more striking early in the growing season. Finally, we identified numerous phyllosphere bacteria belonging to the genera Sphingomonas, Methylobacterium and Pseudomonas that were promoted by rye cover crops. Overall, our findings suggest cover cropping is effective for the sustainable management of P. syringae on squash and may provide a reservoir of potential microbial biocontrol agents colonizing the phyllosphere.

In this short communication, we report the observation of a tricotyledenous giant ragweed (Ambrosia trifida L.) individual. In contrast to the normal dicotyledenous pattern of phyllotaxy, this individual was observed to express three axillary meristems at each node that intersected the main stem at angles of 120°.

Common chickweed [Stellaria media(L.) Vill.] is an annual weed found in grain fields and pastures. This creeping weed produces a mat-like canopy that competes with crop seedlings for light and nutrients. This species is almost exclusively autogamous. Acetolactate synthase (ALS)-inhibiting herbicides are frequently used to control this broadleaf weed, and two mutations in theS. media ALSgene (Pro-197-Gln and Trp-574-Leu) have been reported to confer herbicide resistance. Seeds from several plants that survived an application of thifensulfuron-methyl/tribenuron-methyl (16 g ai ha−1) were collected from the same field in Québec, Canada. Seedlings were grown, tested for the presence of mutations in theALSgene, and treated with different rates of foramsulfuron, flumetsulam, and imazethapyr, each belonging to different families of ALS inhibitors. Two herbicide resistance–conferring mutations were identified in this population. One biotype had the previously reported Pro-197-Gln, while a new mutation, Pro-197-Ser, was identified in different plants from the same population. The new mutation (Pro-197-Ser) confers a lower level of resistance to sulfonylureas than Pro-197-Gln, and both biotypes are susceptible to imizadolinone and triazolopyrimidines.

Glyphosate-resistant populations ofConyza canadensishave been spreading at a rapid rate in Ontario, Canada, since first being documented in 2010. Determining the genetic relationship among existing Ontario populations is necessary to understand the spread and selection of the resistant biotypes. The objectives of this study were to: (1) characterize the genetic variation ofC. canadensisaccessions from the province of Ontario using simple sequence repeat (SSR) markers and (2) investigate the molecular mechanism (s) conferring resistance in these accessions. Ninety-eightC. canadensisaccessions were genotyped using 8 SSR markers. Germinable accessions were challenged with glyphosate to determine their dose response, and the sequences of 5-enolpyruvylshikimate-3-phosphate synthase genes 1 and 2 were obtained. Results indicate that a majority of glyphosate-resistant accessions from Ontario possessed a proline to serine substitution at position 106, which has previously been reported to confer glyphosate resistance in other crop and weed species. Accessions possessing this substitution demonstrated notably higher levels of resistance than non–target site resistant (NTSR) accessions from within or outside the growing region and were observed to form a subpopulation genetically distinct from geographically proximate glyphosate-susceptible and NTSR accessions. Although it is unclear whether other non–target site resistance mechanisms are contributing to the levels of resistance observed in target-site resistant accessions, these results indicate that, at a minimum, selection for Pro-106-Ser has occurred in addition to selection for non–target site resistance and has significantly enhanced the levels of resistance to glyphosate inC. canadensisaccessions from Ontario.

Prodiamine is a dinitroaniline herbicide labeled for PRE control of goosegrass in warm- and cool-season turfgrass. In 2013, several golf course roughs in Maryville, TN reported poor goosegrass control (< 20%) following prodiamine treatment at 1,120 g ai ha-1. We harvested suspected prodiamine-resistant (PR) and prodiamine-susceptible (S) goosegrass phenotypes from the field and exposed them to a range of increasing prodiamine concentrations in hydroponic culture. Exposure to prodiamine at 0.001 mM reduced root growth of the S phenotype to 11% of the non-treated check. By comparison, exposure to 0.001 mM prodiamine had minimal effect on the PR phenotype, as root growth was 94% of the non-treated check. Molecular analyses revealed that PR plants contained a threonine (Thr) to isoleucine (Ile) substitution at position 239 on the α-tubulin 1 (TUA1) protein. The substitution, found in all PR plants, is the mechanism of prodiamine resistance in this phenotype. In field studies, topramezone controlled PR goosegrass 72% to 89% by 50 d after treatment (DAT) compared to only 22% to 23% for foramsulfuron. Topramezone treatment injured bermudagrass 34% to 60% from 7 to 14 DAT; however, injury was≤6% 28 DAT and 0% by the end of the study. Our results indicate that POST applications of topramezone can control dinitroaniline-resistant goosegrass. In addition, we established an easy-to-use genotyping assay to quickly screen goosegrass phenotypes for a target-site mutation (Thr-239-Ile) on TUA1 associated with resistance to dinitroaniline herbicides such as prodiamine. Future research should work to expand this assay for use with other weed species and herbicidal modes of action.

Genomic approaches are opening avenues for understanding all aspects of biological life, especially as they begin to be applied to multiple individuals and populations. However, these approaches typically depend on the availability of a sequenced genome for the species of interest. While the number of genomes being sequenced is exploding, one group that has lagged behind are weeds. Although the power of genomic approaches for weed science has been recognized, what is needed to implement these approaches is unfamiliar to many weed scientists. In this review we attempt to address this problem by providing a primer on genome sequencing and provide examples of how genomics can help answer key questions in weed science such as: (1) Where do agricultural weeds come from; (2) what genes underlie herbicide resistance; and, more speculatively, (3) can we alter weed populations to make them easier to control? This review is intended as an introduction to orient weed scientists who are thinking about initiating genome sequencing projects to better understand weed populations, to highlight recent publications that illustrate the potential for these methods, and to provide direction to key tools and literature that will facilitate the development and execution of weed genomic projects.

Common ragweed (Ambrosia artemisiifolia L.) is frequently observed in Quebec carrot fields. Carrot growers essentially rely on linuron, a photosystem II inhibitor, to control this broadleaf weed. A...

A single radish nuclear gene, Rfo, restores Ogura (ogu) cytoplasmic male sterility (CMS) in Brassica napus. A map-based cloning approach relying on synteny between radish and Arabidopsis was used to clone Rfo. A radish gene encoding a 687-amino-acid protein with a predicted mitochondrial targeting pre-sequence was found to confer male fertility upon transformation into ogu CMS B. napus. This gene, like the recently described Petunia Rf gene, codes for a pentatricopeptide repeat (PPR)-containing protein with multiple, in this case 16, PPR domains. Two similar genes that do not appear to function as Rfo flank this gene. Comparison of the Rfo region with the syntenic Arabidopsis region indicates that a PPR gene is not present at the Rfo-equivalent site in Arabidopsis, although a smaller and related PPR gene is found about 40 kb from this site. The implications of these findings for the evolution of restorer genes and other PPR encoding genes are discussed.

Profilin is a ubiquitous actin-monomer-binding protein. The protistPhysarum polycephalum contains two profilins, ProA and ProP, present in amoebae and plasmodia, respectively. We have used mutantSaccharomyces cerevisiae cells in an attempt to observe distinct functions for the two profilins. Profilin-deficient yeast cells (Δpfy1) have delocalized actin cortical patches, do not contain visible actin cables, have reduced mating efficiency and do not grow at 37 °C or in the presence of caffeine. Deletion of theSRV2 gene (Δsrv2), coding for the adenylyl cyclase-associated protein, also results in an altered actin distribution and an inability to survive on rich medium. We found that the Δpfy1 and Δsrv2 mutant phenotypes were corrected equally well by the overexpression of Physarum ProA or yeast Pfy1p profilins. The Δpfy1 cells overexpressing ProP have improved mating efficiency and a normal distribution of actin cortical patches. These cells, however, have barely detectable actin cables, do not grow at 37 °C, and are sensitive to caffeine. Also, the expression of ProP does not correct the growth defect of the Δsrv2 cells. These results suggest that the two Physarum proteins are not functionally equivalent in yeast cells. No difference was detected in the affinity of ProA and ProP for poly-L-proline, while ProA has a slightly greater affinity than ProP for phosphatidylinositol 4,5-biphosphate.

Main Conclusion This is a first report of an Ala-205-Phe substitution in acetolactate synthase conferring resistance to imidazolinone, sulfonylurea, triazolopyrimidines, sulfonylamino-carbonyl-triazolinones, and pyrimidinyl (thio) benzoate herbicides. Resistance to acetolactate synthase (ALS) and photosystem II inhibiting herbicides was confirmed in a population of allotetraploid annual bluegrass (Poa annua L.; POAAN-R3) selected from golf course turf in Tennessee. Genetic sequencing revealed that seven of eight POAAN-R3 plants had a point mutation in the psbA gene resulting in a known Ser-264-Gly substitution on the D1 protein. Whole plant testing confirmed that this substitution conferred resistance to simazine in POAAN-R3. Two homeologous forms of the ALS gene (ALSa and ALSb) were detected and expressed in all POAAN-R3 plants sequenced. The seven plants possessing the Ser-264-Gly mutation conferring resistance to simazine also had a homozygous Ala-205-Phe substitution on ALSb, caused by two nucleic acid substitutions in one codon. In vitro ALS activity assays with recombinant protein and whole plant testing confirmed that this Ala-205-Phe substitution conferred resistance to imidazolinone, sulfonylurea, triazolopyrimidines, sulfonylamino-carbonyl- triazolinones, and pyrimidinyl (thio) benzoate herbicides. This is the first report of Ala-205-Phe mutation conferring wide spectrum resistance to ALS inhibiting herbicides. Electronic supplementary material The online version of this article (doi:10.1007/s00425-015-2399-9) contains supplementary material, which is available to authorized users.