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Degradation of litter strongly depends on its chemical composition, which in turn affects the associated microorganisms. In the alpine region, the abandonment of pastures leads to a rigorous change in the composition of the litter layer, shifting from grass to highly recalcitrant dwarf shrub litter, thus affecting the food web and decomposition processes. Three species belonging to different functional groups (grasses, herbs, dwarf shrubs) and indigenous on managed and/or abandoned alpine pastureland were selected for this study, the annual grass Dactylis glomerata, characteristic for managed sites, Trollius europaeus as representative of a herb common on both managed and abandoned areas, and Vaccinium vitis-idea as typical dwarf shrub arising on abandoned alpine pastures. Litter bags containing litter material from either one of the three plant types were incubated on the soil surface for 9 weeks. DNA was extracted from the substrate, amplified and analysed using PCR-DGGE. Fingerprinting analyses of bacterial and fungal communities showed that the microbiota attached to the litter differed considerably depending on the plant type. Nonetheless, specific bacterial bands were present in the fingerprinting patterns of all three litter types. Identifying these organisms applying the 16S rRNA clone libraries revealed the dominance of bacteria from the class Bacteroidetes, representing two thirds of all identified band positions. [ABSTRACT FROM AUTHOR]

Abstract: Faecal pellets of macro-decomposers form an important component of upper soil layers. It is, however, not yet specifically known which species’ faecal pellets are important in the process of humus and soil formation. Here we present a novel approach, based on the detection of short DNA fragments, to species-specifically assign faecal pellets to their detritivorous producers. Using diagnostic polymerase chain reaction (PCR), DNA of the two millipede species Cylindroiulus fulviceps and C. meinerti, abundant macro-decomposers on European alpine pastureland, could be detected in their faecal pellets. Although in both species detection was possible up to 5 days post-defecation (no longer intervals were tested), detection rates were significantly higher in C. fulviceps (81.3%) than in Cylindroiulus meinerti (60.9%) in repetitive PCRs. Employing a binomial mixture model, the probability that the producer’s DNA was present in a faecal sample which tested negative in five subsequent PCRs was estimated as 22.0% for C. fulviceps and 41.9% for C. meinerti, suggesting to adopt a flexible stopping rule for assaying this type of samples. This proof-of-concept study demonstrates that the molecular assignment of faecal pellets to their macro-invertebrate producers is possible, offering a new approach to examine the role of decomposer faecal pellets in soil formation and functioning as well as to complement molecular profiling of faunal communities. [Copyright &y& Elsevier]