1. Genome-wide characterization, evolutionary analysis of WRKY genes in Cucurbitaceae species and assessment of its roles in resisting to powdery mildew disease
- Author
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Gao Chao, Xiao Shouhua, Jiao Zigao, Li Wendong, Libin Li, Sun Jianlei, Wang Chongqi, Xuli Gao, Dong Yumei, and Qiwei Cao
- Subjects
Evolutionary Genetics ,0106 biological sciences ,0301 basic medicine ,Melon ,Gene Expression ,Plant Science ,Biochemistry ,01 natural sciences ,Genome ,Database and Informatics Methods ,Cucumis melo ,Vegetables ,Vines ,Disease Resistance ,Plant Proteins ,Data Management ,Genetics ,Multidisciplinary ,Phylogenetic tree ,Plant Fungal Pathogens ,Eukaryota ,food and beverages ,Phylogenetic Analysis ,Plants ,humanities ,Phylogenetics ,Medicine ,Cucurbitaceae ,Sequence Analysis ,Cucumis ,Powdery mildew ,Research Article ,Computer and Information Sciences ,Bioinformatics ,Science ,Plant Pathogens ,Biology ,Genes, Plant ,Research and Analysis Methods ,Fruits ,Evolution, Molecular ,03 medical and health sciences ,Species Specificity ,Sequence Motif Analysis ,DNA-binding proteins ,Gene Regulation ,Evolutionary Systematics ,Gene ,Plant Diseases ,Taxonomy ,Evolutionary Biology ,Cucumber ,Human evolutionary genetics ,Organisms ,Biology and Life Sciences ,Proteins ,Plant Pathology ,biology.organism_classification ,Powdery Mildew ,WRKY protein domain ,Regulatory Proteins ,030104 developmental biology ,Gene Expression Regulation ,Melons ,Sequence Alignment ,Transcription Factors ,010606 plant biology & botany - Abstract
The WRKY proteins constitute a large family of transcription factors that have been known to play a wide range of regulatory roles in multiple biological processes. Over the past few years, many reports have focused on analysis of evolution and biological function of WRKY genes at the whole genome level in different plant species. However, little information is known about WRKY genes in melon (Cucumis melo L.). In the present study, a total of 56 putative WRKY genes were identified in melon, which were randomly distributed on their respective chromosomes. A multiple sequence alignment and phylogenetic analysis using melon, cucumber and watermelon predicted WRKY domains indicated that melon WRKY proteins could be classified into three main groups (I-III). Our analysis indicated that no recent duplication events of WRKY genes were detected in melon, and strong purifying selection was observed among the 85 orthologous pairs of Cucurbitaceae species. Expression profiles of CmWRKY derived from RNA-seq data and quantitative RT-PCR (qRT-PCR) analyses showed distinct expression patterns in various tissues, and the expression of 16 CmWRKY were altered following powdery mildew infection in melon. Besides, we also found that a total of 24 WRKY genes were co-expressed with 11 VQ family genes in melon. Our comparative genomic analysis provides a foundation for future functional dissection and understanding the evolution of WRKY genes in cucurbitaceae species, and will promote powdery mildew resistance study in melon.
- Published
- 2018
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