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1. This study evaluated the minimal inhibitory concentration (MIC) of ciprofloxacin and the presence of plasmid-mediated quinolone resistance (PMQR) mechanisms in 97 nontyphoidal Salmonella spp. isolated from broilers and carcases from three different regions in Brazil. The presence of mutations in quinolone resistance determination regions (QRDRS) was investigated in the ciprofloxacin-resistant strain by DNA sequencing. 2. Most of the Salmonella spp. (85.6%) had intermediate resistance to ciprofloxacin and only one isolate was resistant. MIC breakpoints ranged from ≤0.03 to 1 µg/ml and 67.0% of the strains had a MIC of 0.25 µg/ml (n=65). Thirteen strains (13.4%) were susceptible to ciprofloxacin with MIC ≤0.06 µg/ml. The qnrB gene was detected in eight isolates with intermediate resistance and in two susceptible strains. The other PMQR genes, qnrA, qnrC, qnrD, qnrS, qnrVC, aac(6′)-Ib, qepA, oqxAB and mutations in QRDR were not detected in any strain. 3. There was a high frequency of ciprofloxacin intermediate resistant Salmonella from broiler and broiler carcases from Brazil. The presence of these strains in poultry and derived products poses a risk to public health. [ABSTRACT FROM AUTHOR]

Salmonella enterica serovar Heidelberg is isolated from poultry-producing regions around the world. In Brazil, S. Heidelberg has been frequently detected in poultry flocks, slaughterhouses, and chicken meat. The goal of the present study was to assess the population structure, recent temporal evolution, and some important genetic characteristics of S. Heidelberg isolated from Brazilian poultry farms. Phylogenetic analysis of 68 S. Heidelberg genomes sequenced here and additional whole-genome data from NCBI demonstrated that all isolates from the Brazilian poultry production chain clustered into a monophyletic group, here called S. Heidelberg Brazilian poultry lineage (SH-BPL). Bayesian analysis defined the time of the most recent common ancestor (tMRCA) as 2004, and the overall population size (Ne) was constant until 2008, when an ~ 10-fold Ne increase was observed until circa 2013. SH-BPL presented at least two plasmids with replicons ColpVC (n = 68; 100%), IncX1 (n = 66; 97%), IncA/C2 (n = 65; 95.5%), ColRNAI (n = 43; 63.2%), IncI1 (n = 32; 47%), ColMG828, Col156, IncHI2A, IncHI2, IncQ1, IncX4, IncY, and TrfA (each with n < 4; <4% each). Antibiotic resistance genes were found, with high frequencies of fosA7 (n = 68; 100%), mdf(A) (n = 68; 100%), tet(34) (n = 68; 100%), sul2 (n = 64; 94.1%), and blaCMY-2 (n = 56; 82.3%), along with an overall multidrug resistance (MDR) profile. Ten Salmonella pathogenicity islands (SPI1 to SPI5, SPI9, and SPI11 to SPI14) and 139 virulence genes were also detected. The SH-BPL profile was like those of other previous S. Heidelberg isolates from poultry around the world in the 1990s. In conclusion, the present study demonstrates the recent introduction (2004) and high level of dissemination of an MDR S. Heidelberg lineage in Brazilian poultry operations. IMPORTANCE S. Heidelberg is the most frequent serovar in several broiler farms from the main Brazilian poultry-producing regions. Therefore, avian-source foods (mainly chicken carcasses) commercialized in the country and exported to other continents are contaminated with this foodborne pathogen, generating several national and international economic losses. In addition, isolates of this serovar are usually resistant to antibiotics and can cause human invasive and septicemic infection, representing a public health concern. This study demonstrates the use of whole-genome sequencing (WGS) to obtain epidemiological information for one S. Heidelberg lineage highly spread among Brazilian poultry farms. This information will help to define biosecurity measures to control this important Salmonella serovar in Brazilian and worldwide poultry operations. [ABSTRACT FROM AUTHOR]

A two-stage study compared the BAX system PCR method with the reference culture method used by the Brazilian Ministry of Agriculture and Food Supply for the detection of Salmonella in food, water, and environmental samples. In stage fish matrix samples (n = 258) were spiked at several levels with Salmonella and a combination of Salmonella and non-Salmonella competitive organisms. Replicates were analyzed by the BAX system PCR method and the reference method with comparable results (sensitivity ≥ 97.5%, specificity ≥ 83.3%) from both methods at the limit of detection. In stage 2, a total 1,988 samples with 70 product types were analyzed with both methods. Five laboratories were involved in this study, and samples used were from routine analyses. The BAX system PCR method was shown to be comparable to the reference method, with a limit of detection of 1.0 to 2.0 CFU/25 g of sample. Analysis of the results obtained in stage 2 and in the combination of stages 1 and 2 for the BAX system showed the following performance: sensitivity ≥ 99.0%, specificity ≥ 97.2%, false-negative rate ≤ 1.1%, and false-positive rate ≤ 2.8%. Therefore, the BAX system appears to be equivalent to reference method, with ≥ 97.3% agreement. [ABSTRACT FROM AUTHOR]

• Salmonella grew in sushi under isothermal and non-isothermal conditions (7–37 °C). • The model was validated in the worst-case scenario, built through restaurant visits. • Total Aerobic Mesophilic lag phase in sushi was ~11 h at 15 °C. • Salmonella lag phase in sushi was ~14 h at 15 °C. • Considering Salmonella , 6 h at 15 °C can be used in sushi buffet distribution. In this study mathematical models to predict Salmonella enterica growth in sushi at different temperatures were developed considering data obtained in 26 restaurants in Southern Brazil. The sushi type chosen to develop the models was the one that presented the highest total aerobic mesophilic counts among sushis collected in the establishments. Salmonella was inoculated (2–3 log UFC/g) in this sushi type prepared in the laboratory (pH 4.8; aw 0.98) and incubated under isothermal conditions at 7, 15, 20, 25 and 37 °C. Baranyi and Roberts model was used to describe Salmonella growth curves, generating R2 values of ≥0.98 and RMSE values of <0.24 log CFU/g/h for primary models. Ratkowsky's equation was used in secondary model, generating R2 of 0.99 and RMSE of 0.02 log CFU/g/h. The model validation was simulated under non-isothermal conditions, using the worst-case scenario that was built through data from the environmental conditions and data obtained from the restaurants. The non-isothermal conditions were performed at 36.3 °C for 6 h, 10 °C for 24 h and 29.5 °C for 6 h sequentially, reaching 6.7 log CFU/g of Salmonella and generating RMSE of 0.06 log CFU/g/h, Bias factor of 0.97 and Accuracy factor of 1.03. The negligible growth time (ς) for Salmonella , considering the average of higher distribution temperatures of chosen sushi type (approximately 18 °C), was 8.9 h. However, growth rates of total aerobic mesophilic demonstrated that at 15 °C and 20 °C, the lag phases were approximately 11 and 5 h respectively. Based on these results, we suggest for sushi distribution the use of temperatures of ≤15 °C for 6 h (maximum time of distribution allowed in Brazil) considering the Salmonella growth. [ABSTRACT FROM AUTHOR]