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Salt marsh ponds expand and deepen over time, potentially reducing ecosystem carbon storage and resilience. The water filled volumes of ponds represent missing carbon due to prevented soil accumulation and removal by erosion and decomposition. Removal mechanisms have different implications as eroded carbon can be redistributed while decomposition results in loss. We constrained ponding effects on carbon dynamics in a New England marsh and determined whether expansion and deepening impact nearby soils by conducting geochemical characterizations of cores from three ponds and surrounding high marshes and models of wind‐driven erosion. Radioisotope profiles demonstrate that ponds are not depositional environments and that contemporaneous marsh accretion represents prevented accumulation accounting for 32%–42% of the missing carbon. Erosion accounted for 0%–38% and was bracketed using radioisotope inventories and wind‐driven resuspension models. Decomposition, calculated by difference, removes 22%–68%, and when normalized over pond lifespans, produces rates that agree with previous metabolism measurements. Pond surface soils contain new contributions from submerged primary producers and evidence of microbial alteration of underlying peat, as higher levels of detrital biomarkers and thermal stability indices, compared to the marsh. Below pond surface horizons, soil properties and organic matter composition were similar to the marsh, indicating that ponding effects are shallow. Soil bulk density, elemental content, and accretion rates were similar between marsh sites but different from ponds, suggesting that lateral effects are spatially confined. Consequently, ponds negatively impact ecosystem carbon storage but at current densities are not causing pervasive degradation of marshes in this system. Plain Language Summary: Ponds are natural features of salt marshes but their expansion may be an indicator of ecosystem deterioration because they impede the marsh's ability to keep pace with sea‐level rise and remove decades of buried soil carbon. The water filled holes created by ponds represent volumes of marsh soil carbon that are missing due to prevented accumulation or lost through erosion and decomposition. These loss pathways have different implications for coastal carbon cycling as eroded soils can be redeposited elsewhere while microbial decomposition represents permanent loss. We used geochemical and modeling approaches to assess how much of the carbon missing from ponds can be attributed to prevented soil accumulation, erosion, and decomposition as well as whether ponds reduce the integrity of the surrounding marsh. We estimate that these processes represent 32%–42%, 0%–38%, and 22%–68%, respectively, of soil carbon missing from three ponds in a New England salt marsh. The range of potential erosion losses reflect differences in fetch and wind‐driven waves used in the models. Decomposition was calculated by subtracting the contributions of prevented accretion and erosion from the volume of missing carbon and, while the range is large, losses normalized over time are comparable to previously measured respiration rates. Comparisons of soil properties and composition between the ponds and surrounding marsh demonstrate that the effects of expansion are confined to within a 10 m perimeter. Consequently, in this system, ponds represent net losses from the carbon budget and at current densities are not causing pervasive degradation of the marsh. Key Points: Salt marsh ponds deepen and expand over time but their effects are localized and do not result in deterioration of the surrounding marshThree processes account for soil carbon missing from deepening ponds: prevented deposition, erosion, and decompositionEroded soils may be redistributed and retained within the marsh, while decomposition represents carbon loss [ABSTRACT FROM AUTHOR]

Salt marsh survival with sea‐level rise (SLR) increasingly relies on soil organic carbon (SOC) accumulation and preservation. Using a novel combination of geochemical approaches, we characterized fine SOC (≤1 mm) supporting marsh elevation maintenance. Overlaying thermal reactivity, source (δ13C), and age (F14C) information demonstrates several processes contributing to soil development: marsh grass production, redeposition of eroded material, and microbial reworking. Redeposition of old carbon, likely from creekbanks, represented ∼9%–17% of shallow SOC (≤26 cm). Soils stored marsh grass‐derived compounds with a range of reactivities that were reworked over centuries‐to‐millennia. Decomposition decreases SOC thermal reactivity throughout the soil column while the decades‐long disturbance of ponding accelerated this shift in surface horizons. Empirically derived estimates of SOC turnover based on geochemical composition spanned a wide range (640–9,951 years) and have the potential to inform predictions of marsh ecosystem evolution. Plain Language Summary: Salt marsh survival with rising sea levels increasingly depends on the accumulation and preservation of buried organic carbon. Marsh soil organic carbon development reflects at least three processes: burial of differently reactive compounds that derive from local grasses, redeposition of old carbon (9%–17%), and microbial reworking. Decomposition results in a progressive decrease in the thermal reactivity of soil organic carbon, and disturbances such as ponding can accelerate this shift. Modeled rates of geochemically defined soil organic carbon pools turnover on the order of centuries‐to‐millennia and can refine predictions of salt marsh sustainability. Key Points: Salt marsh soils preserved compounds with a range of reactivities that were derived from local grasses9%–17% of surface soil carbon was old, likely reflecting redeposition of eroded creekbank materialDecomposition decreases soil organic carbon thermal reactivity, and disturbances accelerate this shift, particularly in surface horizons [ABSTRACT FROM AUTHOR]

Shallow ponds are expanding in many salt marshes with potential impacts on ecosystem functioning. Determining how pond characteristics change over time and scale with physical dimensions and other spatial predictors could facilitate incorporation of ponds into projections of ecosystem change. We evaluated scaling relationships across six differently sized ponds in three regions of the high marshes within the Plum Island Ecosystems‐Long Term Ecological Research site (MA, USA). We further characterized diel fluctuations in surface water chemistry in two ponds to understand short‐term processes that affect emergent properties (e.g., habitat suitability). Primary producers drove oxygen levels to supersaturation during the day, while nighttime respiration resulted in hypoxic to anoxic conditions. Diel swings in oxygen were mirrored by pH and resulted in successive shifts in redox‐sensitive metabolisms, as indicated by nitrate consumption at dusk followed by peaks in ammonium and then sulfide overnight. Abundances of macroalgae and Ruppia maritima correlated with whole‐pond oxygen metabolism rates, but not with surface area (SA), volume (V), or SA:V. Moreover, there were no clear patterns in primary producer abundances, surface water chemistry, or pond metabolism rates across marsh regions supplied by different tidal creeks or that differed in distance to upland borders or creekbanks. Comparisons with data from 2 years prior demonstrate that plant communities and biogeochemical processes are not in steady state. Factors contributing to variability between ponds and years are unclear but likely include infrequent tidal exchange. Temporal and spatial variability and the absence of scaling relationships complicate the integration of high marsh ponds into ecosystem biogeochemical models. Plain Language Summary: The spatial extent of shallow ponds is expanding in many salt marshes, due to hydrologic management practices and sea‐level rise, among other factors. Accounting for ponds in ecosystem biogeochemical models is important for predicting how marshes may change in the future. It is impractical to characterize every marsh pond because they can account for a large fraction of the landscape. Developing predictive relationships between pond properties and easily measured attributes, such as dimensions or distance from marsh landscape features, could facilitate integration of ponds into ecosystem models. We found that pond biogeochemistry changes dramatically day to night, reflecting a combination of primary production and heterotrophic (i.e., microbial) respiration. However, abundances of primary producers, and their effects on whole‐pond oxygen metabolism, did not change predictably with pond surface area or volume. Pond properties also did not vary according to location within the marsh. Instead, each pond was unique. The processes affecting pond development are therefore highly localized and might reflect long periods of tidal isolation in the high marsh. Key Points: Spatial and temporal variability in the biogeochemistry of ponds makes it difficult to estimate their contributions to salt marsh functioningPond water oxygen levels swing from supersaturation to anoxia over daily cycles, causing successive shifts in redox‐sensitive metabolismsBiogeochemical processes reflect localized conditions and do not scale with dimensions or vary predictably with marsh spatial properties [ABSTRACT FROM AUTHOR]

Roots of salt marsh grasses contribute to soil building but also affect decomposition by releasing bioavailable carbon exudates and oxygen. Disentangling exudate and oxygen effects on decomposition is difficult in the field but essential for marsh carbon models and predicting the impacts of global change disturbances. We tested how pulsed, simulated exudates affect soil metabolism under oxic and anoxic conditions, and whether carbon and oxygen availability facilitate mineralization of existing organic matter (i.e., priming). We conducted a laboratory experiment in flow-through reactors, adding carbon pulses weekly for 84 days and then following starvation under low carbon conditions. Oxygen consumption and sulfide production were inhibited under anoxic and oxic conditions and slowed by 21 ± 10% and 55 ± 8%, respectively, between 1- and 5- days following exudate pulses. Respiration rates immediately following and between pulses increased over time, suggesting that microbes capitalize on and may acclimate to patchy resources. Starvation caused oxygen consumption and sulfide production to fall 28% and 78% in oxic and anoxic treatments. Smaller decreases in oxygen consumption following pulses could suggest greater access to secondary carbon sources and that sulfate reducers were more reliant on exudates. Soil organic carbon was not the likely secondary source because porewater dissolved inorganic carbon δ13C values did not change during transit through the reactors, despite a ∼26‰ difference between the supplied seawater and marsh soil. Interpretation of oxygen consumption rates is complicated by non-respiratory oxidation of reduced inorganic compounds and possibly significant lithoautotrophy. Exudate pulses elicited rapid and ephemeral respiratory responses, particularly under anoxia, but non-respiratory oxidation of reduced compounds obscured the impact of oxygen availability in our experimental system. Despite this, greater aerobic respiration rates suggest that oxygen availability has more potential to regulate carbon mineralization in coastal wetlands than root exudates. • Respiration rates immediately following and between carbon pulses increased over time. • Respiratory responses to carbon pulses and starvation were greater under anoxia. • Non-respiratory oxidation of reduced compounds obscured oxygen availability effects. • Carbon mineralization may be more sensitive to oxygen than root exudates in wetlands. [ABSTRACT FROM AUTHOR]

Salt marshes, due to their capability to bury soil carbon (C), are potentially important regional C sinks. Efforts to restore tidal flow to former salt marshes have increased in recent decades in New England (USA), as well as in some other parts of the world. In this study, we investigated plant biomass and carbon dioxide (CO 2) fluxes at four sites where restoration of tidal flow occurred five to ten years prior to the study. Site elevation, aboveground biomass, CO 2 flux, and porewater chemistry were measured in 2015 and 2016 in both restored marshes and adjacent marshes where tidal flow had never been restricted. We found that the elevation in restored marsh sites was 2–16 cm lower than their natural references. Restored marshes where porewater chemistry was similar to the natural reference had greater plant aboveground biomass, gross ecosystem production, ecosystem respiration, as well as net ecosystem CO 2 exchange (NEE) than the natural reference, even though they had the same plant species. We also compared respiration rates in aboveground biomass (AR) and soil (BR) during July 2016, and found that restored marshes had higher AR and BR fluxes than natural references. Our findings indicated that well-restored salt marshes can result in greater plant biomass and NEP, which has the potential to enhance rates of C sequestration at 10-yrs post restoration. Those differences were likely due to lower elevation and greater flooding frequency in the recently restored marshes than the natural marsh. The inverse relationship between elevation and productivity further suggests that, where sea-level rise rate does not surpass the threshold of plant survival, the restoration of these salt marshes may lead to enhanced organic and mineral sedimentation, extending marsh survival under increased sea level, and recouping carbon stocks that were lost during decades of tidal restriction. The photos showing the tidal channel before (A) and after restoration (B) at Bass creek, Barnstable, MA, USA. Our study indicated that successful restoration of salt marshes leads to greater rates of C sequestration for a decade, at minimum. Moreover, the negative relationship between elevation and plant productivity suggested that sea level rise may lead to enhanced sedimentation, extending marsh survival under the increased sea level, and recouping carbon stocks that were lost during tidal restriction periods. Unlabelled Image • Coastal wetlands are important regional C sinks. • The plant biomass and CO 2 fluxes was compared in restored marsh and reference. • The recently restored salt marsh had higher plant aboveground biomass and NEE than the natural marsh. • Negative feedbacks between plant productivity and sea levels rise help salt marsh survival. [ABSTRACT FROM AUTHOR]