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Salt marshes are one of the most productive ecosystems and provide numerous ecosystem services. However, they are seriously threatened by human activities and sea level rise. One of the main characteristics of this environment is the distribution of specialized plant species. The environmental conditions governing the distribution of this vegetation, as well as its variation over time and space, still need to be better understood. In this way, these ecosystems will be managed and protected more effectively. Low-altitude remote sensing techniques are excellent for rapidly assessing salt marsh vegetation coverage. By applying a high-resolution hyperspectral imaging system onboard a UAV (UAV-HS), this study aims to differentiate between plant species and determine their distribution in salt marshes, using the salt marshes of Cadiz Bay as a case study. Hyperspectral processing techniques were used to find the purest spectral signature of each species. Continuum removal and second derivative transformations of the original spectral signatures highlight species-specific spectral absorption features. Using these methods, it is possible to differentiate salt marsh plant species with adequate precision. The elevation range occupied by these species was also estimated. Two species of Sarcocornia spp. were identified on the Cadiz Bay salt marsh, along with a class for Sporobolus maritimus. An additional class represents the transition areas from low to medium marsh with different proportions of Sarcocornia spp. and S. maritimus. S. maritimus can be successfully distinguished from soil containing microphytobenthos. The final species distribution map has up to 96% accuracy, with 43.5% of the area occupied by medium marsh species (i.e., Sarcocornia spp.) in the 2.30–2.80 m elevation range, a 29% transitional zone covering in 1.91–2.78 m, and 25% covered by S. maritims (1.22–2.35 m). Basing a method to assess the vulnerability of the marsh to SLR scenarios on the relationship between elevation and species distribution would allow prioritizing areas for rehabilitation. UAV-HS techniques have the advantage of being easily customizable and easy to execute (e.g., following extreme events or taking regular measurements). The UAV-HS data is expected to improve our understanding of coastal ecosystem responses, as well as increase our capacity to detect small changes in plant species distribution through monitoring.

Monitoring and management of plant water status over the critical period between flowering and veraison, plays a significant role in producing grapes of premium quality. Hyperspectral spectroscopy has been widely studied in precision farming, including for the prediction of grapevine water status. However, these studies were presented based on various combinations of transformed spectral data, feature selection methods, and regression models. To evaluate the performance of different modeling pipelines for estimating grapevine water status, a study spanning the critical period was carried out in two commercial vineyards at Martinborough, New Zealand. The modeling used six hyperspectral data groups (raw reflectance, first derivative reflectance, second derivative reflectance, continuum removal variables, simple ratio indices, and vegetation indices), two variable selection methods (Spearman correlation and recursive feature elimination based on cross-validation), an ensemble of selected variables, and three regression models (partial least squares regression, random forest regression, and support vector regression). Stem water potential (used as a proxy for vine water status) was measured by a pressure bomb. Hyperspectral reflectance was undertaken by a handheld spectroradiometer. The results show that the best predictive performance was achieved by applying partial least squares regression to simple ratio indices (R2 = 0.85; RMSE = 110 kPa). Models trained with an ensemble of selected variables comprising multicombination of transformed data and variable selection approaches outperformed those fitted using single combinations. Although larger data sizes are needed for further testing, this study compares 38 modeling pipelines and presents the best combination of procedures for estimating vine water status. This may lead to the provision of rapid estimation of vine water status in a nondestructive manner and highlights the possibility of applying hyperspectral data to precision irrigation in vineyards.

Irrigation-induced salinization is an important land degradation process that affects crop yield in the Brazilian semi-arid region, and gypsum has been used as a corrective measure for saline soils. Fluvent soil samples (180) were treated with increasing levels of salinization of NaCl, MgCl2 and CaCl2. The salinity was gauged using electrical conductivity (EC). Gypsum was added to one split of these samples before they were treated by the saline solutions. Laboratory reflectance spectra were measured at nadir under a controlled environment using a FieldSpec spectrometer, a 250-W halogen lamp and a Spectralon panel. Variations in spectral reflectance and brightness were evaluated using principal component analysis, as well as the continuum-removed absorption depths of major features at 1450, 1950, 1750 and 2200 nm for both the gypsum-treated (TG) and non-treated (NTG) air-dried soil samples as a function of EC. Pearson’s correlation coefficients of reflectance and the band depth with EC were also obtained to establish the relationships with salinity. Results showed that NTG samples presented a decrease in reflectance and brightness with increasing CaCl2 and MgCl2 salinization. The reverse was observed for NaCl. Gypsum increased the spectral reflectance of the soil. The best negative correlations between reflectance and EC were observed in the 1500–2400 nm range for CaCl2 and MgCl2, probably because these wavelengths are most affected by water absorption, as Ca and Mg are much more hygroscopic than Na. These decreased after chemical treatment with gypsum. The most prominent features were observed at 1450, 1950 and 1750 nm in salinized-soil spectra. The 2200-nm clay mineral absorption band depth was inversely correlated with salt concentration. From these features, only the 1750 and 2200 nm ones are within atmospheric absorption windows and can be more easily measured using hyperspectral sensors.

The water column overlying the submerged aquatic vegetation (SAV) canopy presents difficulties when using remote sensing images for mapping such vegetation. Inherent and apparent water optical properties and its optically active components, which are commonly present in natural waters, in addition to the water column height over the canopy, and plant characteristics are some of the factors that affect the signal from SAV mainly due to its strong energy absorption in the near-infrared. By considering these interferences, a hypothesis was developed that the vegetation signal is better conserved and less absorbed by the water column in certain intervals of the visible region of the spectrum; as a consequence, it is possible to distinguish the SAV signal. To distinguish the signal from SAV, two types of classification approaches were selected. Both of these methods consider the hemispherical–conical reflectance factor (HCRF) spectrum shape, although one type was supervised and the other one was not. The first method adopts cluster analysis and uses the parameters of the band (absorption, asymmetry, height and width) obtained by continuum removal as the input of the classification. The spectral angle mapper (SAM) was adopted as the supervised classification approach. Both approaches tested different wavelength intervals in the visible and near-infrared spectra. It was demonstrated that the 585 to 685-nm interval, corresponding to the green, yellow and red wavelength bands, offered the best results in both classification approaches. However, SAM classification showed better results relative to cluster analysis and correctly separated all spectral curves with or without SAV. Based on this research, it can be concluded that it is possible to discriminate areas with and without SAV using remote sensing.

This study examined the relationship between the leaf reflectance of different seasons and the concentration of heavy metal elements in leaves, such as Co, Cu, Mo, and Ni in a post-mining area. The reflectance spectra and leaf samples of three typical plants were measured and collected in a whole growth cycle (June, July, August, and September). The Red Edge Position (REP), Readjustment Normalized Difference Vegetation Index (RE-NDVI), and Photochemical Reflectance Index (PRI) were extracted and used to explore its relation with the heavy metals concentrations in leaves between different seasons. The results show that all three Vegetation Indices (VIs) were insensitive indicators for monitoring the metal effects of vegetation in different seasons, which showed similar trends. Based on this, the Continuum Removal Indices (CRIs) were proposed from the continuum removed approach and extended for detecting the effects of heavy metal pollution over a full growth cycle. The relationship between the metal concentrations and CRIs of different plants was respectively analyzed by Stepwise Multiple Linear Regression (SMLR) and Partial Least Squares Regression (PLSR). It is found that a significant correlation exists between the band depth and the concentration of Cu and Ni based on the White birch data sets using the PLSR, resulting in a small deviation from the established relationships. Compared with VIs, the approach of coupling CRIs and multiple regressions was effective for improving the estimation accuracy. The presented study provides a detection model of leaf heavy metals that can be adapted to different growing cycles, even an arbitrary growing cycle.

Considering the important roles of carbonate rock fraction in karst rocky desertification areas and their potential for indicating damage to vegetation, improved knowledge is desired to assess the application of spectroscopy and remote sensing to characterizing and quantifying the biophysical constituents of karst landscapes. In this study, we examined the spectra of major surface constituents in karst areas for direct evidence of absorption features attributable to carbonate rock fraction. Using spectral feature analysis with continuum removal, we observed that there are overlapping spectral absorption in 2.149–2.398 μm by soils and non-photosynthetic vegetation. These overlapping features complicated the carbonate absorption feature near 2.340 μm in synthetic mixed spectra. To remove the overprint signal, two hyperspectral carbonate rock indices (HCRIs) were developed. Compared to the absorption features including depths, areas, and KRDSIs (karst rocky desertification synthesis indices), linear regression of HCRIs with carbonate rock fraction in linear synthetic mixtures resulted in higher correlations and lower errors. This study demonstrates that spectral variation of the surface constituents spectra in 2.270–2.398 μm region can indicate carbonate rock fraction and be used to quantify them. Still, additional research is needed to advance our understanding of the spectral influences from carbonate petrography relative to carbonate mineralogy, components and physical state of rock surface.