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Great efforts have been made recently to understand the effect(s) of urban environments on the circadian and seasonal physiology of wild animals, but the mechanisms involved remain largely unknown. Most laboratory studies and a few studies on animals in the wild suggest alterations occur in the physiological functions of organisms in urban habitats. Here, we addressed the effects of the interaction of seasons and urban environments on clock gene expression in three tissues of tree sparrows (Passer montanus). Tree sparrows (N = 30 per site per time of year) were procured from rural and urban habitats during periods corresponding to their three physiological states, i.e., June (longest photoperiod; reproductive phase), September (equinox photoperiod; refractory phase), and December (shortest photoperiod; sensitive phase). Birds (N = 5 per time per site per month) were sampled at six time points; ZT1, ZT5, ZT9, ZT13, ZT17, and ZT21 (ZT0 = sunrise time) and clock gene expression in the hypothalamus, pineal gland, and retina was studied. Our results show that there is persistence of the circadian clock in both rural and urban birds throughout the year. In urban birds Bmal1, Npas2, Per2, and Cry1 acrophases were advanced, compared to rural birds, while Clock acrophase was delayed, depending on the tissue and time of year. This difference could be because of changes in the availability, duration, and intensity of sunlight during different times of the year and/or differential photoreceptor sensitivities, differential physiological states, or a combination of all these factors. These important results reveal, for the first time in any species, season-dependent effects of an urban environment on the molecular machinery of the circadian clock.

We investigated at the transcriptional level the role of daily rhythm in melatonin secretion in seasonal responses in the migratory blackheaded bunting (Emberiza melanocephala), which when exposed to short (SP) and long (LP) photoperiods exhibits distinct seasonal life-history states (LHSs). We reproduced the seasonal LHS by subjecting buntings to SP (8 h light: 16 h darkness, 8 L:16D), which maintained the nonmigratory/ nonbreeding phenotype, and to LP (16 L:8D), which induced the premigratory/ prebreeding, migratory/ breeding and nonmigratory/ postbreeding phenotypes. Plasma melatonin measured at 4 h intervals showed loss of the daily rhythm in the LP-induced premigratory/ prebreeding and migratory/ breeding LHSs. Subsequently, mRNA expression of genes coding for the aryl-alkamine-N-acetyltransferase (AANAT; the rate-liming enzyme of melatonin biosynthesis) and for the receptors for melatonin (Mel1A, Mel1B and Mel1C) was examined in the retina, pineal and hypothalamus; the interacting independent circadian clocks comprising the songbird circadian timing system. Except AANAT that was not amplified in the hypothalamus, we found significant alterations in both, the level and persistence of 24 h rhythm in mRNA expression of all genes, albeit with photoperiod and seasonal differences between three circadian clock tissues. Particularly, 24 h mRNA expression pattern of all genes, except retinal Mel1A, lacked a significant daily rhythm in the LP-induced migratory/ breeding LHS. These results underscore the overall importance of the circadian rhythm in the role of melatonin in photoperiodically-controlled seasonal responses in migratory songbirds., (Copyright © 2019 Elsevier Inc. All rights reserved.)

Seasonality is represented as an initiation-termination-reinitiation of any physiological processes. Photoperiod is the most predictable environmental cue which organism use to time their daily physiology and seasonal functions. In natural light environmental conditions, day and night components change in terms of duration, intensity and spectrum of light available. In many vertebrate species, daytime light intensity and spectrum of light play a critical role in gonadal recrudescence-regression cycle. In tropical conditions, many amphibian species show a clear relationship between reproduction and seasonal distribution of rainfall. In temperate conditions, reproduction is usually centered during spring and summer seasons when environmental conditions are favorable. Poikilotherms are highly sensitive to change in environmental temperature and their physiology and metabolic activities depend on environmental temperature. How environmental factors (light and temperature) influence, the reproduction of terai tree frog (Polypedates teraiensis) is not known. We hypothesized that light acts as a proximate factor but the temperature is the ultimate factor for reproduction of terai tree frog. Three experiments were performed. In experiment one, we studied the annual reproductive cycle under natural environmental conditions. Beginning from the month of March till October 2016, we procured adult frogs (male and female) in the middle of each month. Monthly observations were recorded for body weight and gonadal weight and GSI was calculated. We found the annual change in body mass, gonadal weight and GSI in both male and female with high gonadal weight and GSI values from March to June. These results suggest that terai tree frog is seasonal breeders, and their breeding corresponds with long days. In experiment two we addressed the effects of light duration, light intensity and light spectrum on gonadal growth regression cycle. We observed that long days promote gonadal growth regression cycle. However, after achieving critical daylength there is no additive effect of light duration. Further, light intensity and spectrum have limited role in gonadal growth regression cycle of this species. In experiment three we tested the role of temperature on body weight and testicular growth under stimulatory photoperiod (12 L:12D). Group one was exposed to high temperature (34 ± 2 °C), while group two was exposed to low temperature (22 ± 2 °C). We found that low temperature promotes testicular recrudescence under laboratory conditions. Altogether our study suggests both photoperiod and temperature are involved in the regulation of seasonal breeding in tree frog. Findings from the above study could be used for captive breeding of amphibians and may be helpful in amphibian conservation programmes., (Copyright © 2018 Elsevier B.V. All rights reserved.)

A photoperiodic species initiates fat deposition (in migrants) and gonadal recrudescence in response to a specific duration of natural daylight, called critical day length (CD), when light extends in the inductive phase of the endogenous circadian rhythm of photoinducibility (CRP). The molecular basis of species-specificCD, determined by the entrainment of the CRP, has been poorly understood. To investigate this, we measured expression levels of genes implicated in the photoperiod-induced changes in reproduction (EYA3, TSH beta, DIO2, DIO3, GNRH and GNIH) and metabolism (SIRT1, HMGCR, FASN and PPAR alpha) in photosensitive redheaded buntings subjected to light-dark cycles of varying period lengths (T-photocycles). Buntings were exposed to six T22, T24 or T26 photocycles, with 1h additional light at night falling at different phases of the entrained CRP (T2211L=6L:4D:1L:11D; T2411L=6L:4D:1L:13D,T2412L=6L:5D:1L:12D, T2413L=6L:6D:1L:11D; T2612L=6L:5D:1L:14D). Photoinduction at genetic and phenotypic levels in T2412L and T2413L, not T2411L, groups confirmed CD being close to 12h in buntings under T24. Compared to T24, exposure to T22 advanced CD by 1h, as evidenced by photoinduction in the T2211L, not T226L, group. Similarly, CD appeared to be delayed under T26, with no photoinduction in the T2612L group. Further, to show that induction of response under a T-photocycle was because of the interaction of inductive phase of the CRP with 1h during the dark period in each cycle, not with the 6h main light periods falling 2h earlier each successive 24hday in a T22 paradigm, a group of buntings was exposed to 6L:16D (T226L), to which they did not respond. The mRNA expression of genes, particularly TSH beta, DIO2, DIO3 and PPAR alpha, was significantly correlated with changes in reproductive and metabolic phenotypes. These results suggest CRP-entrainment based genetic regulation of the CD, and extend the idea that synchronization with environment is a critical measure in a seasonal species for its temporal adaptation in the wild., (Copyright © 2015 Elsevier Inc. All rights reserved.)

Eukaryotic cells produce chemical energy in the form of ATP by oxidative phosphorylation of metabolic fuels via a series of enzyme mediated biochemical reactions. We propose that the rates of these reactions are altered, as per energy needs of the seasonal metabolic states in avian migrants. To investigate this, blackheaded buntings were photoperiodically induced with non-migratory, premigratory, migratory and post-migratory phenotypes. High plasma levels of free fatty acids, citrate (an intermediate that begins the TCA cycle) and malate dehydrogenase (mdh, an enzyme involved at the end of the TCA cycle) confirmed increased availability of metabolic reserves and substrates to the TCA cycle during the premigratory and migratory states, respectively. Further, daily expression pattern of genes coding for enzymes involved in the oxidative decarboxylation of pyruvate to acetyl-CoA (pdc and pdk) and oxidative phosphorylation in the TCA cycle (cs, odgh, sdhd and mdh) was monitored in the hypothalamus and liver. Reciprocal relationship between pdc and pdk expressions conformed with the altered requirements of acetyl-CoA for the TCA cycle in different metabolic states. Except for pdk, all genes had a daily expression pattern, with high mRNA expression during the day in the premigratory/migratory phenotypes, and at night (cs, odhg, sdhd and mdh) in the nonmigratory phenotype. Differences in mRNA expression patterns of pdc, sdhd and mdh, but not of pdk, cs and odgh, between the hypothalamus and liver indicated a tissue dependent metabolism in buntings. These results suggest the adaptation of oxidative phosphorylation pathway(s) at gene levels to the seasonal alternations in metabolism in migratory songbirds., (Copyright © 2015 Elsevier Inc. All rights reserved.)

We proposed two perhaps overlapping hypotheses. Hypothesis 1 examined whether daily light information was transduced by a change in the pattern of daily melatonin secretion. Hypothesis 2 tested whether the melatonin amplitude peak was contingent upon seasonal states. To test these hypotheses, we performed three experiments on night migratory blackheaded buntings (Emberiza melanocephala). The first two experiments measured plasma melatonin levels in buntings exposed to light-dark (LD) cycles, with white and/or blue (450 nm) and red (640 nm) light periods differing by about 10-12 fold in the level of illuminance. In birds exposed to a 12 h day (white light) at 0.66 W m(-2) (dim) and 7.85 W m(-2) (bright) light intensities (experiment 1), night melatonin levels were significantly affected by the end of 8-week exposure in the dim, not bright, day with buntings showing a bimodal nocturnal melatonin peak. Similarly, in birds on 13 h days in white, blue and red light periods at 0.028 W m(-2) (dim) and 0.28 (bright) W m(-2) intensities (experiment 2), mid night melatonin levels were significantly higher in red than in the blue or white light periods after 4.5 weeks of exposure. The third experiment measured plasma melatonin levels in buntings that were held under natural light conditions (NDL, 27°N; experiment 3A), or exposed to LD cycles (experiment 3B). There were slightly more elevated melatonin levels early at night during the spring (photosensitive) than during the autumn (photorefractory) migration season, without a difference in nocturnal melatonin peak between these two times providing almost similar light hours. Similarly, there was no difference in mid night melatonin levels between photosensitive and photorefractory buntings subjected to a skeleton photoperiod (1L : 11D : 1L : 11D), although melatonin levels were higher in the first than in the second 11 h dark phase in photosensitive birds. Overall, these results show that (i) nocturnal melatonin levels decode the intensity and wavelength of the daily light environment, and (ii) the daily melatonin secretion pattern subtly reflects seasonal states in the migratory blackheaded bunting.

The survival of offspring depends on environmental conditions. Many organisms have evolved with seasonality, characterized as initiation‐termination‐reinitiation of several physiological processes (i.e., body fattening, molt, plumage coloration, reproduction, etc). It is an adaptation for the survival of many species. Predominantly seasonal breeders use photoperiod as the most reliable environmental cue to adapt to seasonal changes but supplementary factors like temperature and food are synergistically involved in seasonal processes. Studies from diverse vertebrate systems have contributed to understanding the mechanism involved in seasonal reproduction at the molecular and endocrine levels. Long‐day induced thyrotropin (thyroid‐stimulating hormone) released from the pars tuberalis of the pituitary gland triggers local thyroid hormone activation within the mediobasal hypothalamus. This locally produced thyroid hormone, T3, regulates seasonal gonadotropin‐releasing hormone secretion. Most of the bird species studied are seasonal in reproduction and linked behavior and, therefore, need to adjust reproductive decisions to environmental fluctuations. Reproductive strategies of the temperate zone breeders are well‐documented, but less is known about tropical birds' reproduction and factors stimulating the annual breeding strategies. Here, we address seasonality in tropical birds with reference to seasonal reproduction and the various environmental factors influencing seasonal breeding. RESEARCH HIGHLIGHTS: •Majority of birds are seasonal breeders and time their annual physiology in synchrony of solar cycle.•Present review focus on seasonality in birds with specific reference to tropical breeders. [ABSTRACT FROM AUTHOR]

Seasonal breeders predominantly use photoperiod as the predictable environmental cue to time their reproduction. Terai tree frogs are long-day seasonal breeders, but the molecular mechanism is unknown. We tested the role of different photoperiodic conditions on expression levels of candidate genes involved in seasonal reproduction and epigenetic regulation. Four experiments were performed. In experiment 1, frogs were exposed to long (LD: 16L:8D) or short photoperiod (SD: 8L:16D). In experiment 2, animals were procured at four different phases of breeding, i.e., during April (emergence just after hibernation), June (breeding phase), August (post-breeding), and October (just before hibernation). In experiments 3 and 4, frogs were exposed to equinox photoperiod but different (10, 100, or 500 lx) light intensities (exp. 3) or wavelength (red: 640 nm, green: 540 nm, blue: 450 nm or white; exp. 4). After 2 weeks, animals were euthanized, and their brain was harvested. mRNA levels of transcripts involved in photoperiodic transduction (Eya3 and Opn5), reproduction (Tshß, GnRH, Dio2, and Dio3), and epigenetics regulation (Dnmt1, Dnmt3a, Hdac1, Hdac3, and Tet2) were measured. Results show that LD promotes the upregulation of Eya3, Opn5, Tshß, GnRH, and Dio2. Differential expression of Opn5 during LD and SD suggests its involvement in light perception. Dio3 levels were upregulated in SD (exp.1) and during the post-breeding phase (exp. 2). These results employ the limited role of light intensity and spectrum in reproduction. This is the first study showing molecular machinery involved in the amphibian system's seasonal reproduction and epigenetic regulation. [ABSTRACT FROM AUTHOR]