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The diversity and dynamics of ammonia-oxidizing bacteria (AOB) and archaea (AOA) nitrifying communities in the sediments of the eutrophic Gulf of Finland (GoF) were investigated. Using clone libraries of ammonia monooxygenase ( amoA ) gene fragments and terminal restriction fragment length polymorphism (TRFLP), we found a low richness of both AOB and AOA. The AOB amoA phylogeny matched that of AOB 16S ribosomal genes from the same samples. AOA communities were characterized by strong spatial variation while AOB communities showed notable temporal patterns. At open sea sites, where transient anoxic conditions prevail, richness of both AOA and AOB was lowest and communities were dominated by organisms with gene signatures unique to the GoF. Given the importance of nitrification as a link between the fixation of nitrogen and its removal from aquatic environments, the low diversity of ammonia-oxidizing microbes across the GoF could be of relevance for ecosystem resilience in the face of rapid global environmental changes. [ABSTRACT FROM AUTHOR]

The effects of hypolimnetic aeration on oxygen penetration depth and oxygen flux into the sediment (DOU) were studied during two successive years. The study was conducted by comparing data from the aerated Enonselkä basin with the non-aerated Kajaanselkä basin of Lake Vesijärvi (southern Finland). Aeration increased the average O2 concentration in near-bottom layers. This was mainly due to shortened stratification period in the aerated basin, which was again attributed to the positive effect of aeration on hypolimnetic water temperature. Aeration did not prevent hypoxia during summer stratification and oxygen penetration depth in the sediment and DOU did not increase. During summer stratification DOU was even lower at the aerated than at the non-aerated basin. The weak effect of aeration on DOU and oxygen penetration was mostly due to the minor effect on hypolimnetic oxygen concentrations. The positive effect of aeration on hypolimnetic O2 concentration was negated by the positive effects of aeration on hypolimnetic temperature and turbulence that increase oxygen consumption in the water column. Due to the generally low effect on DOU, the present aeration effort in Enonselkä does not have positive effects on sediment quality. [ABSTRACT FROM AUTHOR]

Nitrification is a crucial process in sediment nitrogen cycling. We compared two 15N tracer-based nitrification measurement techniques (isotope pairing technique (IPT) combined with 15N nitrate pool dilution and 15N ammonium oxidation) and three different 15N analyses from bottom water nitrate (ammonia diffusion, denitrifier and SPINMAS) in a sediment mesocosm. The 15N nitrate pool dilution technique combined with IPT can be used to quantify the in situ nitrification, but the minimum detection limit for the total nitrification is higher than that in the 15N ammonium oxidation technique. The 15N ammonium oxidation technique, however, is not applicable for sediments that have high ammonium content. If nitrate concentration and the amount of 15N label in the sample are low, the 15N nitrate analysis should be done with the denitrifier method. In higher 15N concentrations, the less sensitive SPINMAS method can also be applied. The ammonia diffusion method is not suitable for bottom water 15N nitrate analyses. [ABSTRACT FROM AUTHOR]

Coastal areas are critical in mitigating the impact of nutrient runoffs and downstream eutrophication of aquatic ecosystems. In the Gulf of Finland, the easternmost sub-basin of the Baltic Sea, seasonal and long-term oxygen depletion at the surface of the sediment feeds back the eutrophication loop by promoting the release of nutrients locked in the sediment matrix. In order to understand how the bacterial community responds to the seasonal variations, we sequenced ribosomal gene fragments from the top sediment layer at two coastal sites in southern Finland in spring, summer and late autumn during two consecutive years. Analysis of the samples collected at a shallow (11 m) and deep site (33 m) revealed that the overall community composition was rather constant over time with an extensive collection of shared operational taxonomic units (OTU) between sites. The dominant taxa were related to organoheterotrophs and sulfate reducers and the variation in community structure was linked to the availability of organic matter in the surface sediment. Proteobacteria formed the most abundant and diverse group. The taxa characteristic of spring samples belonged primarily to Actinobacteria , possibly of fresh water origin and linked to humic carbon. Summer communities were characterized by an increase in the number of reads associated with heterotrophic bacteria such as Bacteroidetes which feed on labile organic matter from spring bloom. Taxa typical of autumn samples were linked to Cyanobacteria and other bloom-forming bacteria from the overlying water and to bacteria feeding on organic matter drifting from the phytal zone. [ABSTRACT FROM AUTHOR]