8 results on '"Nechaeva, Natalia"'
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2. Surface-enhanced Raman spectroscopy in tandem with a gradient electric field from 4-mercaptophenylboronic acid on silver nanoparticles
- Author
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Podoynitsyn, Sergey N., Sorokina, Olga N., Nechaeva, Natalia L., Yanovich, Sergey V., and Kurochkin, Ilya N.
- Published
- 2020
- Full Text
- View/download PDF
3. SERS for Bacteria, Viruses, and Protein Biosensing
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Kurochkin, Ilya N., Eremenko, Arkadiy V., Evtushenko, Evgeniy G., Nechaeva, Natalia L., Durmanov, Nikolay N., Guliev, Rustam R., Ryzhikov, Ilya A., Boginskaya, Irina A., Sarychev, Andrey K., Ivanov, A. V., and Lagarkov, Andrey N.
- Subjects
SERS ,enzymes ,viruses ,biosensing ,bacteria ,Article ,proteins - Abstract
In this chapter, various techniques are reviewed with focus on the identification of complex biological agents such as bacteria, viruses, proteins, and enzymes using SERS-active silver substrates. Biological targets have multiple peculiarities that add to the challenges of the SERS biosensing. In regards to the direct non-labeled sensing of bacteria, it was discovered that all bands in the registered SER spectra were generated by metabolites released from bacterial cells. It undermined the prior notion of non-labeled detection and identification of bacteria based on the presumed spectra of cellular walls. However, it also provides new opportunities for the SERS analysis of bacteria. The SERS measurements of viruses can be performed with SERS-active surfaces or colloidal solutions of silver nanoparticles. However, the use of surfaces requires extensive sample preparation and often lacks sensitivity, while colloidal SERS substrates have another problem—most types of silver nanoparticles are negatively charged and have a poor interaction with likewise predominantly negatively charged virions. Thus, a challenge is posed to develop SERS-ready positively charged silver nanoparticles or use other methods to enforce the non-specific binding of viruses to the silver surfaces. Meanwhile, SER spectra of proteins are nearly impossible to acquire at adequate sensitivity. Thus, non-direct measurements are the only way. SERS provides the most benefits when working with relatively small molecules, so small molecules serving as Raman probes can be used as an intermediary to produce SER spectra. For enzymes like butyrylcholinesterase, it means measuring SER spectra of substrates and products of the relevant reaction, while for other proteins, specialized techniques must be developed. It can be concluded that biological targets require a case-by-case approach. Prior experiences with direct SERS measurements of highly Raman-active molecules like R6G and others often used in fundamental studies might not be relevant in bioanalytics.
- Published
- 2020
4. In Situ SERS Sensing by a Laser-Induced Aggregation of Silver Nanoparticles Templated on a Thermoresponsive Polymer.
- Author
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Sigolaeva, Larisa V., Nechaeva, Natalia L., Ignatov, Anton I., Filatova, Lyubov Y., Sharifullin, Timur Z., Eichhorn, Jonas, Schacher, Felix H., Pergushov, Dmitry V., Merzlikin, Alexander M., and Kurochkin, Ilya N.
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SERS spectroscopy ,SILVER nanoparticles ,THERMORESPONSIVE polymers ,DIBLOCK copolymers ,BLOCK copolymers ,PHASE transitions ,SODIUM borohydride ,TRANSMISSION electron microscopy - Abstract
A stimuli-responsive (pH- and thermoresponsive) micelle-forming diblock copolymer, poly(1,2-butadiene)
290 -block-poly(N,N-dimethylaminoethyl methacrylate)240 (PB-b-PDMAEMA), was used as a polymer template for the in situ synthesis of silver nanoparticles (AgNPs) through Ag+ complexation with PDMAEMA blocks, followed by the reduction of the bound Ag+ with sodium borohydride. A successful synthesis of the AgNPs on a PB-b-PDMAEMA micellar template was confirmed by means of UV–Vis spectroscopy and transmission electron microscopy, wherein the shape and size of the AgNPs were determined. A phase transition of the polymer matrix in the AgNPs/PB-b-PDMAEMA metallopolymer hybrids, which results from a collapse and aggregation of PDMAEMA blocks, was manifested by changes in the transmittance of their aqueous solutions as a function of temperature. A SERS reporting probe, 4-mercaptophenylboronic acid (4-MPBA), was used to demonstrate a laser-induced enhancement of the SERS signal observed under constant laser irradiation. The local heating of the AgNPs/PB-b-PDMAEMA sample in the laser spot is thought to be responsible for the triggered SERS effect, which is caused by the approaching of AgNPs and the generation of "hot spots" under a thermo-induced collapse and the aggregation of the PDMAEMA blocks of the polymer matrix. The triggered SERS effect depends on the time of a laser exposure and on the concentration of 4-MPBA. Possible mechanisms of the laser-induced heating for the AgNPs/PB-b-PDMAEMA metallopolymer hybrids are discussed. [ABSTRACT FROM AUTHOR]- Published
- 2022
- Full Text
- View/download PDF
5. Human Angiotensin I-Converting Enzyme Produced by Different Cells: Classification of the SERS Spectra with Linear Discriminant Analysis.
- Author
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Boginskaya, Irina, Safiullin, Robert, Tikhomirova, Victoria, Kryukova, Olga, Nechaeva, Natalia, Bulaeva, Naida, Golukhova, Elena, Ryzhikov, Ilya, Kost, Olga, Afanasev, Konstantin, and Kurochkin, Ilya
- Subjects
FISHER discriminant analysis ,ANGIOTENSIN I ,ANGIOTENSINS ,POST-translational modification ,SERS spectroscopy ,HEART cells - Abstract
Angiotensin I-converting enzyme (ACE) is a peptidase widely presented in human tissues and biological fluids. ACE is a glycoprotein containing 17 potential N-glycosylation sites which can be glycosylated in different ways due to post-translational modification of the protein in different cells. For the first time, surface-enhanced Raman scattering (SERS) spectra of human ACE from lungs, mainly produced by endothelial cells, ACE from heart, produced by endothelial heart cells and miofibroblasts, and ACE from seminal fluid, produced by epithelial cells, have been compared with full assignment. The ability to separate ACEs' SERS spectra was demonstrated using the linear discriminant analysis (LDA) method with high accuracy. The intervals in the spectra with maximum contributions of the spectral features were determined and their contribution to the spectrum of each separate ACE was evaluated. Near 25 spectral features forming three intervals were enough for successful separation of the spectra of different ACEs. However, more spectral information could be obtained from analysis of 50 spectral features. Band assignment showed that several features did not correlate with band assignments to amino acids or peptides, which indicated the carbohydrate contribution to the final spectra. Analysis of SERS spectra could be beneficial for the detection of tissue-specific ACEs. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
6. Human angiotensin I‐converting enzyme study by surface‐enhanced Raman spectroscopy.
- Author
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Boginskaya, Irina, Nechaeva, Natalia, Tikhomirova, Victoria, Kryukova, Olga, Evdokimov, Valery, Bulaeva, Naida, Golukhova, Elena, Ryzhikov, Ilya, Kost, Olga, Afanasev, Konstantin, Vereshchagin, Konstantin, and Kurochkin, Ilya
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ANGIOTENSIN I , *SERS spectroscopy , *ANGIOTENSINS , *ENZYMES , *RAMAN spectroscopy - Abstract
Angiotensin I‐converting enzyme (ACE) is a glycoprotein, consisting of two homologous domains within a single polypeptide chain. ACE concentration in biological fluids is an important parameter of clinical observation; its increase or decrease may accompany various pathologies. Currently, the exact crystal structure of the two‐domain ACE form is still unknown because of microheterogeneity and intensity of the enzyme glycosylation. Raman spectroscopy provides the qualitative and quantitative analysis of many compounds, including proteins. For the first time, surface‐enhanced Raman scattering (SERS) spectra of native and thermo‐denatured human ACE have been demonstrated with full assignment. Denaturation leads to SERS intensity increase and bands shifting. Detailed band assignment and discussion are included to elucidate the potential site of ACE interaction with the silver surface. Based on SERS spectra, we characterized the region on the ACE molecule in contact with the substrate and demonstrated the model of the two‐domain ACE adsorbed on a silver matrix. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
7. Multiscale flaked silver SERS-substrate for glycated human albumin biosensing.
- Author
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Nechaeva, Natalia L., Boginskaya, Irina A., Ivanov, Andrey V., Sarychev, Andrey K., Eremenko, Arkadiy V., Ryzhikov, Ilya A., Lagarkov, Andrey N., and Kurochkin, Ilya N.
- Subjects
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SERS spectroscopy , *PARTIAL least squares regression , *ALBUMINS , *SILVER , *SURFACE plasmons , *PLATE - Abstract
Original multiscale flaked silver SERS-substrate (MFSS substrate) was applied for glycated albumin (GA) biosensing. The substrate is composed from silver flakes that have three orders of magnitude size dispersion: from 50 nm to 2 μm. The multiscale silver structure refracts the incident light and various surface plasmons are excited. Some of the internal plasmons are localized and give rise of the large local electric field. It was demonstrated that Raman scattering signal strongly depends: a) on "hot spots" formation at the edges and points of contact of silver plates, and b) on the angle of incidence. As a result the silver structure operates as an effective SERS substrate. To achieve the selectivity to glycated part, the surface of SERS-substrate was modified with 4-mercaptophenylboronic acid (4-mPBA). Various saccharides (Fru, Glc, Suc, Dex) were taken as model compounds for the glycated proteins determination. The saccharides contain cis -diol groups that form five- or six-membered ethers with boronic acid. Spectrum of SERS-substrate changes after sugar/glycated albumin treatment. Main differences in the SERS-spectra of sugar/glycated albumin treated SERS-substrate and control are referred to phenylboronic acid vibrations (999, 1021, 1072 and 1589 cm−1). Principal component analysis (PCA) and Partial Least Squares Regression (PLS-R) were used to discriminate spectra and to construct calibration curve, as well as to measure GA values in real samples of human plasma. Multiscale flaked silver SERS-substrate modified with 4-mPBA allows quantitative one-step biosensing of glycated albumin in 15 μl of human plasma. Image 1 • Silver SERS-substrate was used for glycated human albumin biosensing. • The main differences in spectra are observed at 416, 470, 999, 1021, 1072, 1572 and 1589 cm−1. • SERS-effect depends on "hot spots" formation at the edges of silver plates, and on the angle of incidence. • Quantitative one-step biosensing of glycated albumin in 15 μl of human plasma had been done. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
8. Laser intensity limits in surface‐enhanced linear and nonlinear Raman micro‐spectroscopy of organic molecule/Au‐nanoparticle conjugates.
- Author
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Fabelinsky, Victor I., Kozlov, Dimitrii N., Polivanov, Yury N., Smirnov, Valery V., Bokova‐Sirosh, Sofia N., Obraztsova, Elena D., Arzumanyan, Grigory M., Mamatkulov, Kahramon Z., Afanasiev, Konstantin N., Boginskaya, Irina A., Budashov, Igor A., and Nechaeva, Natalia L.
- Subjects
SURFACE enhanced Raman effect ,ANTI-Stokes scattering ,LASER beams ,RAMAN scattering ,LASERS ,SURFACE structure - Abstract
Laser light, illuminating surface‐enhanced Raman scattering‐active nanostructured CeO2/Al/Al2O3 thin‐film samples with reporter molecules/Au nanoparticle conjugates on the CeO2 surface, may cause irreversible modifications of the conjugates and of the surface structure field‐enhancing properties. As a result, the observed Raman signal decreases or vanishes. The limits of the laser light intensity suitable for nondestructive spectroscopic studies have been assessed using continuous and quasi‐continuous wave (mode‐locked ps‐pulse) laser radiation at different wavelengths. This radiation was used as a pump for linear and nonlinear Raman microspectroscopy of reporter molecules adsorbed on the surface of such a plasmonic metamaterial. Reducing laser power below certain levels allowed reproducible mapping of surface‐enhanced Raman scattering and surface‐enhanced coherent anti‐Stokes Raman scattering signal strengths at the reporter molecule Raman shifts. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
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