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Soil salinization problems are widespread in the Hetao plain, Inner Mongolia, resulting from arid climate conditions, a shallow saline water table, poor irrigation water management, and insufficient drainage. This study follows previous research aimed at evaluating crop water use and controlling the salinity build-up in the region, namely using weighing and static water table lysimeters to parameterize a water balance model aimed at the development of appropriate irrigation scheduling. Two sets of five static water table lysimeters, which fixed depths ranged from 1.25 to 2.25 m, were used over two maize crop seasons. The mechanistic HYDRUS-1D model was further used to daily predict measured data on soil water contents, boundary fluxes in the interface between the saturated and unsaturated zones, the electrical conductivity of the soil saturation paste extract (EC e), and the actual crop evapotranspiration (ET c act). The soil water balance helped quantify the combined effect of water and salinity stresses on root water uptake as well as groundwater fluxes into the rootzone. The salt balance showed that the salinity build-up was much related to irrigation and capillary fluxes, and that the autumn irrigation carried out during the non-growing season was essential for controlling soil salinity. The efficiency of the autumn irrigation much depended on groundwater depth and the amount of water applied for salt leaching, with the best results found for the lysimeters with water table depths at 2.0 and 2.25 m (85–100%) for irrigation depths ≥ 220 mm. The lysimeters with shallower water tables never showed a leaching efficiency higher than 88%. This research shows that the sustainability of irrigation in Hetao depends on finding adequate solutions for controlling the depth of the saline groundwater, minimizing capillary fluxes to the rootzone, and developing consequent approaches for autumn irrigation leaching. • Soil water contents and fluxes, EC e , and ET c act were measured using water table lysimeters. • The HYDRUS-1D model successfully simulated lysimeter data during two seasons. • The water table depth influenced the effectiveness of autumn irrigation leaching. • The leaching efficiency only increased by improving soil drainage conditions. • Reducing autumn irrigation depth (<200 mm) promoted soil salinization. [ABSTRACT FROM AUTHOR]