8 results on '"Hopkins, David W."'
Search Results
2. Experimental warming increases fungal alpha diversity in an oligotrophic maritime Antarctic soil.
- Author
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Newsham, Kevin K., Misiak, Marta, Goodall-Copestake, William P., Dahl, Malin Stapnes, Boddy, Lynne, Hopkins, David W., and Davey, Marie L.
- Subjects
IRRIGATED soils ,ORGANONITROGEN compounds ,FUNGAL communities ,MARINE west coast climate ,SOILS ,TUNDRAS - Abstract
The climate of maritime Antarctica has altered since the 1950s. However, the effects of increased temperature, precipitation and organic carbon and nitrogen availability on the fungal communities inhabiting the barren and oligotrophic fellfield soils that are widespread across the region are poorly understood. Here, we test how warming with open top chambers (OTCs), irrigation and the organic substrates glucose, glycine and tryptone soy broth (TSB) influence a fungal community inhabiting an oligotrophic maritime Antarctic fellfield soil. In contrast with studies in vegetated soils at lower latitudes, OTCs increased fungal community alpha diversity (Simpson's index and evenness) by 102-142% in unamended soil after 5 years. Conversely, OTCs had few effects on diversity in substrate-amended soils, with their only main effects, in glycine-amended soils, being attributable to an abundance of Pseudogymnoascus. The substrates reduced alpha and beta diversity metrics by 18-63%, altered community composition and elevated soil fungal DNA concentrations by 1-2 orders of magnitude after 5 years. In glycine-amended soil, OTCs decreased DNA concentrations by 57% and increased the relative abundance of the yeast Vishniacozyma by 45-fold. The relative abundance of the yeast Gelidatrema declined by 78% in chambered soil and increased by 1.9-fold in irrigated soil. Fungal DNA concentrations were also halved by irrigation in TSB-amended soils. In support of regional- and continental-scale studies across climatic gradients, the observations indicate that soil fungal alpha diversity in maritime Antarctica will increase as the region warms, but suggest that the accumulation of organic carbon and nitrogen compounds in fellfield soils arising from expanding plant populations are likely, in time, to attenuate the positive effects of warming on diversity. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
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3. Inhibitory effects of climate change on the growth and extracellular enzyme activities of a widespread Antarctic soil fungus.
- Author
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Misiak, Marta, Goodall‐Copestake, William P., Sparks, Tim H., Worland, M. Roger, Boddy, Lynne, Magan, Naresh, Convey, Peter, Hopkins, David W., and Newsham, Kevin K.
- Subjects
EXTRACELLULAR enzymes ,CLIMATE change ,SOIL fungi ,SOIL temperature ,SOILS ,IRRIGATED soils ,HELIOSEISMOLOGY - Abstract
Temperatures approaching or exceeding 20°C have been measured during summer in polar regions at the surfaces of barren fellfield soils under cloudless skies around solar noon. However, despite the upper temperature limit for the growth of cold‐adapted microbes—which are abundant in polar soils and have pivotal roles in nutrient cycling—typically being close to this temperature, previous studies have not addressed the consequences of climate change for the metabolism of these organisms in the natural environment. Here in a 5‐year field experiment on Alexander Island in the southern maritime Antarctic, we show that the abundance of Pseudogymnoascus roseus, the most widespread decomposer fungus in maritime Antarctic fellfield soils, is reduced by 1–2 orders of magnitude when irrigated and nutrient‐amended soils are warmed to >20°C during summer. Laboratory experiments under conditions mimicking those during midsummer in the natural environment indicated that the hyphal extension rates of P. roseus isolates and the activities of five extracellular enzymes are reduced by 54%–96% at high water availability after exposure to temperatures cycling daily from 2 to 21°C and 2 to 24°C, relative to temperatures cycling from 2 to 18°C. Given that the temperatures of surface soils at the study site already reach 19°C during midsummer, the observations reported here suggest that, at predicted rates of warming arising from moderate greenhouse gas emissions, inhibitory effects of climate change on the metabolism of P. roseus could manifest themselves within the next few decades. Furthermore, with peak temperatures at the surfaces of fellfield soils at other maritime Antarctic locations and in High Arctic and alpine regions already exceeding 20°C during summer, the observations suggest that climate warming has the potential to inhibit the growth of other cold‐adapted microbes, with negative effects on soils as the Earth's climate continues to warm. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
4. Lean and keen: Microbial activity in soils from the Maritime Antarctic.
- Author
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Hopkins, David W., Dennis, Paul G., Rushton, Steven P., Newsham, Kevin K., and O'Donnell, Tony G.
- Subjects
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SOILS , *WATER supply , *BIOTIC communities , *SEA birds , *SOLAR radiation , *EXTREME environments - Abstract
The soils of the Maritime and sub‐Antarctic experience extreme environmental conditions but nonetheless host biological communities that can survive low temperatures, limited water availability and short day lengths or even the complete absence of solar radiation during the winter. We determined the soil organic carbon (SOC) and total nitrogen (N), soil microbial biomass (SMB), labile carbon (LC) and respiration rate (RR) in soil samples from the longest latitudinal transect (approximately 2,000 km) ever sampled exclusively in the Maritime and sub‐Antarctic, comprising 69 sites located between South Georgia (54°S) and south‐eastern Alexander Island (72°S). With the exception of the most northerly location (South Georgia), the greatest SMB values occurred at 67–68°S, despite the harsh environmental conditions. This is consistent with the relative nutrient richness of the soils at these latitudes, as indicated by large SOC and total soil N concentrations, which are in turn probably linked to more abundant guano and excreta deposition by sea birds and seals, which have fewer and smaller areas of ice‐free terrain to land or haul out on further south. South of 68°S, SOC values declined with increasing latitude, which is probably due to increasingly extreme environmental conditions. We also found that the SOC and SMB values, the proportion of SOC considered labile (LC/SOC) and the carbon mineralization rates expressed as either RR/SOC or RR/SMB were all small compared with values from less extreme temperate and tropical regions. However, the proportion of the SOC in the microbial biomass (SMB/SOC) was substantially greater than that reported for non‐polar soils. We conclude that although the soils of the Maritime and sub‐Antarctic have small and relatively inactive microbial communities, they are characterized by efficient conversion of organic resources into microbial biomass and large affinities for added substrates. Highlights: Soil carbon parameters are reported from sites along the longest latitudinal transect in Antarctica ever sampled.The soil microbial biomass tended to peak at 67–68°S, coinciding with relative SOC and N abundance in the soil, probably arising from guano and excreta from sea birds and mammals.The soil microbial community was small but highly efficient at converting organic resources into microbial biomass, as indicated by large microbial biomass/soil organic carbon ratios. [ABSTRACT FROM AUTHOR]
- Published
- 2021
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5. Bacterial Community Composition and Diversity Respond to Nutrient Amendment but Not Warming in a Maritime Antarctic Soil.
- Author
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Newsham, Kevin K., Tripathi, Binu M., Dong, Ke, Yamamoto, Naomichi, Adams, Jonathan M., and Hopkins, David W.
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BACTERIAL diversity ,BACTERIAL communities ,SOIL composition ,PLANT populations ,SOILS ,PLANT growth ,MARINE west coast climate ,TUNDRAS - Abstract
A resumption of climate warming in maritime Antarctica, arising from continued greenhouse gas emissions to the atmosphere, is predicted to lead to further expansions of plant populations across the region, with consequent increases in nutrient inputs to soils. Here, we test the main and interactive effects of warming, applied with open top chambers (OTCs), and nutrient amendment with tryptic soy broth (TSB), an artificial growth substrate, on bacterial community composition and diversity using Illumina sequencing of 16S rRNA genes in soil from a field experiment in the southern maritime Antarctic. Substantial effects of TSB application on bacterial communities were identified after 49 months, including reduced diversity, altered phylogenetic community assembly processes, increased Proteobacteria-to-Acidobacteria ratios and significant divergence in community composition, notably increases in the relative abundances of the gram-positive genera Arthrobacter, Paeniglutamicibacter and Planococcus. Contrary to previous observations from other maritime Antarctic field warming experiments, we recorded no effects of warming with OTCs, or interactive effects of OTCs and TSB application, on bacterial community composition or diversity. Based on these findings, we conclude that further warming of the maritime Antarctic is unlikely to influence soil bacterial community composition or diversity directly, but that increased nutrient inputs arising from enhanced plant growth across the region may affect the composition of soil bacterial communities, with possible effects on ecosystem productivity. [ABSTRACT FROM AUTHOR]
- Published
- 2019
- Full Text
- View/download PDF
6. Distribution of soil carbon and microbial biomass in arable soils under different tillage regimes.
- Author
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Benhua Sun, Hallett, Paul D., Caul, Sandra, Daniell, Tim J., and Hopkins, David W.
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HUMUS ,CARBON compounds ,NO-tillage ,MINIMUM tillage ,SINGLE cell lipids ,SOILS - Abstract
We have measured total soil organic carbon (SOC), dissolved organic carbon (DOC), and microbial lipid contents (as indices of microbial biomass and community structure), and their distributions to 60 cm depth in soils from replicated medium-term (2003-2008) experimental arable plots subject to different tillage regimes in Scotland. The treatments were zero tillage (ZT), minimum tillage (MT; cultivation to 7 cm), the conventional tillage (CT) practice of ploughing to 20 cm, and deep ploughing (DP) to 40 cm depth. In the 0-30 cm depth range, SOC content (corrected for bulk density differences between tillage treatments) was greatest under ZT and MT, but over 0-60 cm depth the SOC contents of these treatments were similar to the CT and DP treatments. DOC concentrations declined with increasing depth in ZT and MT above 20 cm, but there were no significant differences with depth in the CT and DP treatments. Beneath 20 cm, there was little change in DOC concentration with depth for all treatments, although for the MT treatment, there was less DOC beneath the depth of cultivation. The total microbial biomass decreased with increasing depth over the 0-60 cm range in the ZT and MT treatments, whereas it decreased with depth only below 30-40 cm in the CT and DP treatments. The microbial biomass was significantly different only between 0-5 cm in the ZT, CT and DP treatments, but not for other depths between all treatments. The bacterial biomass was greater in the ZT treatment than in MT, CT and DP near the soil surface, but not significantly different over the whole profile (0-60 cm). The fungal biomass decreased with depth in the ZT and MT treatments over the whole 0-60 cm depth range, whereas it decreased with depth only below 20 cm in the CT and DP treatments. [ABSTRACT FROM AUTHOR]
- Published
- 2011
- Full Text
- View/download PDF
7. Soil microbial respiration in arctic soil does not acclimate to temperature.
- Author
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Hartley, Iain P., Hopkins, David W., Garnett, Mark H., Sommerkorn, Martin, and Wookey, Philip A.
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BACTERIA , *SOILS , *CARBON , *CLIMATE change , *ACCLIMATIZATION , *COOLING - Abstract
Warming-induced release of CO2 from the large carbon (C) stores in arctic soils could accelerate climate change. However, declines in the response of soil respiration to warming in long-term experiments suggest that microbial activity acclimates to temperature, greatly reducing the potential for enhanced C losses. As reduced respiration rates with time could be equally caused by substrate depletion, evidence for thermal acclimation remains controversial. To overcome this problem, we carried out a cooling experiment with soils from arctic Sweden. If acclimation causes the reduction in soil respiration observed after experimental warming, then it should subsequently lead to an increase in respiration rates after cooling. We demonstrate that thermal acclimation did not occur following cooling. Rather, during the 90 days after cooling, a further reduction in the soil respiration rate was observed, which was only reversed by extended re-exposure to warmer temperatures. We conclude that over the time scale of a few weeks to months, warming-induced changes in the microbial community in arctic soils will amplify the instantaneous increase in the rates of CO2 production and thus enhance C losses potentially accelerating the rate of 21st century climate change. [ABSTRACT FROM AUTHOR]
- Published
- 2008
- Full Text
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8. Emissions of N2O and CO2, denitrification measurements and soil properties in red clover and ryegrass stands
- Author
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Šimek, Miloslav, Elhottová, Dana, Klimeš, František, and Hopkins, David W.
- Subjects
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NITROUS oxide , *CARBON dioxide , *SOILS , *AIR - Abstract
The relationships between the fluxes of nitrous oxide (N2O) and carbon dioxide (CO2), and their concentrations in the soil air, three different measures of potential denitrification, soil moisture, soil temperature and precipitation were investigated in soils from beneath ryegrass (Lolium multiflorum Lam.), red clover (Trifolium pratense L.) and mixture of ryegrass–red clover stands on a gleic cambisol. Investigations were carried out in order to test the hypothesis that the measure(s) of potential denitrification are good predictor(s) of N2O fluxes and thus may be used in empirical models of N2O emission. Potential denitrification characteristics used in this study involved (i) short-term denitrifying enzyme activity (DEA), (ii) long-term denitrification potential (DP), both determined in soils amended with nitrate and glucose, and (iii) denitrification rate (DR) measured using intact soil cores. Flux measurements were made using cylindrical chambers (internal diameter 31 cm, volume 0.015 m3). The fluxes of N2O and CO2 and many other characteristics showed large spatial and temporal variability. Emissions of N2O from the grass plots were closely related to N2O concentrations in the soil atmosphere at 22.5 cm depth. Most soil properties did not correlate with N2O fluxes. It was concluded that DP was not a good predictor for N2O flux. DEA did not show significant relationship with N2O flux, but it is suggested that if determined in representative, large soil samples, DEA could be a predictor of N2O fluxes; this assumption needs, however, verification. The only potential denitrification characteristic which was significantly related to N2O emission both in grass and clover treatments was DR, which was determined in soil cores. [Copyright &y& Elsevier]
- Published
- 2004
- Full Text
- View/download PDF
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