1. Binding of Pro-Gly-Pro at the active site of leukotriene A 4 hydrolase/aminopeptidase and development of an epoxide hydrolase selective inhibitor
- Author
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Jesper Z. Haeggström, Roman A. Zubarev, Alena Stsiapanava, Min Wan, Dorothea Rutishauser, Agnes Rinaldo-Matthis, Ulrika Olsson, Thea K. Kleinschmidt, and Bengt Samuelsson
- Subjects
Models, Molecular ,animal structures ,Proline ,Protein Conformation ,Stereochemistry ,Leukotriene B4 ,Tripeptide ,Aminopeptidase ,Leukotriene-A4 hydrolase ,chemistry.chemical_compound ,X-Ray Diffraction ,Tandem Mass Spectrometry ,Catalytic Domain ,Hydrolase ,Escherichia coli ,Humans ,Epoxide hydrolase ,Chromatography, High Pressure Liquid ,Epoxide Hydrolases ,Inflammation ,Multidisciplinary ,integumentary system ,biology ,Chemistry ,Active site ,Substrate (chemistry) ,Biological Sciences ,Thiazoles ,Biochemistry ,biology.protein ,Crystallization ,Oligopeptides - Abstract
Leukotriene (LT) A4 hydrolase/aminopeptidase (LTA4H) is a bifunctional zinc metalloenzyme that catalyzes the committed step in the formation of the proinflammatory mediator LTB4. Recently, the chemotactic tripeptide Pro-Gly-Pro was identified as an endogenous aminopeptidase substrate for LTA4 hydrolase. Here, we determined the crystal structure of LTA4 hydrolase in complex with a Pro-Gly-Pro analog at 1.72 Å. From the structure, which includes the catalytic water, and mass spectrometric analysis of enzymatic hydrolysis products of Pro-Gly-Pro, it could be inferred that LTA4 hydrolase cleaves at the N terminus of the palindromic tripeptide. Furthermore, we designed a small molecule, 4-(4-benzylphenyl)thiazol-2-amine, denoted ARM1, that inhibits LTB4 synthesis in human neutrophils (IC50 of ∼0.5 μM) and conversion of LTA4 into LTB4 by purified LTA4H with a Ki of 2.3 μM. In contrast, 50- to 100-fold higher concentrations of ARM1 did not significantly affect hydrolysis of Pro-Gly-Pro. A 1.62-Å crystal structure of LTA4 hydrolase in a dual complex with ARM1 and the Pro-Gly-Pro analog revealed that ARM1 binds in the hydrophobic pocket that accommodates the ω-end of LTA4, distant from the aminopeptidase active site, thus providing a molecular basis for its inhibitory profile. Hence, ARM1 selectively blocks conversion of LTA4 into LTB4, although sparing the enzyme’s anti-inflammatory aminopeptidase activity (i.e., degradation and inactivation of Pro-Gly-Pro). ARM1 represents a new class of LTA4 hydrolase inhibitor that holds promise for improved anti-inflammatory properties.
- Published
- 2014
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