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1. Differentiating between viruses and virus species by writing their names correctly

Author: Zerbini, Francisco Murilo, Siddell, Stuart G, Mushegian, Arcady R, Walker, Peter J, Lefkowitz, Elliot J, Adriaenssens, Evelien M, Alfenas-Zerbini, Poliane, Dutilh, Bas E, García, María Laura, Junglen, Sandra, Krupovic, Mart, Kuhn, Jens H, Lambert, Amy J, Łobocka, Małgorzata, Oksanen, Hanna M, Robertson, David L, Rubino, Luisa, Sabanadzovic, Sead, Simmonds, Peter, Suzuki, Nobuhiro, Van Doorslaer, Koenraad, Vandamme, Anne-Mieke, Varsani, Arvind, Theoretical Biology and Bioinformatics, Sub Bioinformatics, Universidade Federal de Viçosa = Federal University of Viçosa (UFV), University of Bristol [Bristol], National Science Foundation [Arlington] (NSF), University of Queensland [Brisbane], University of Alabama at Birmingham [ Birmingham] (UAB), Quadram Institute Bioscience [Norwich, U.K.] (QIB), Biotechnology and Biological Sciences Research Council (BBSRC), Friedrich-Schiller-Universität = Friedrich Schiller University Jena [Jena, Germany], Utrecht University [Utrecht], Instituto de Biotecnología y Biología Molecular [La Plata] (IBBM), Consejo Nacional de Investigaciones Científicas y Técnicas [Buenos Aires] (CONICET)-Facultad de Ciencias Exactas [La Plata], Universidad Nacional de la Plata [Argentine] (UNLP)-Universidad Nacional de la Plata [Argentine] (UNLP), Charité - UniversitätsMedizin = Charité - University Hospital [Berlin], Virologie des archées - Archaeal Virology, Université Paris Cité (UPCité)-Microbiologie Intégrative et Moléculaire (UMR6047), Institut Pasteur [Paris] (IP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut Pasteur [Paris] (IP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Integrated Research Facility at Fort Detrick (IRF-Frederick), National Institute of Allergy and Infectious Diseases [Bethesda] (NIAID-NIH), National Institutes of Health [Bethesda] (NIH)-National Institutes of Health [Bethesda] (NIH), Centers for Disease Control and Prevention [Fort Collins, Colorado, USA], Institute of Biochemistry and Biophysics, Polska Akademia Nauk = Polish Academy of Sciences (PAN), Helsingin yliopisto = Helsingfors universitet = University of Helsinki, MRC - University of Glasgow Centre for Virus Research, CNR Istituto per la Protezione Sostenibile delle Piante [Torino, Italia] (IPSP), National Research Council of Italy | Consiglio Nazionale delle Ricerche (CNR), Mississippi State University [Mississippi], University of Oxford, Okayama University, BIO5 Institute, University of Arizona, Catholic University of Leuven - Katholieke Universiteit Leuven (KU Leuven), Universidade Nova de Lisboa = NOVA University Lisbon (NOVA), Arizona State University [Tempe] (ASU), Research reported in this publication was supported by the National Institute of Allergy and Infectious Diseases of the National Institutes of Health under Award Number U24AI162625 to E.J.L. This work was supported in part through Laulima Government Solutions, LLC prime contract with the US National Institute of Allergy and Infectious Diseases (NIAID) under Contract No. HHSN272201800013C. J.H.K. performed this work as an employee of Tunnell Government Services (TGS), a subcontractor of Laulima Government Solutions, LLC under Contract No. HHSN272201800013C. B.E.D. is supported by the European Research Council (ERC) Consolidator Grant 865694: DiversiPHI, and the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany's Excellence Strategy—EXC 2051—Project-ID 390713860. E.M.A. gratefully acknowledges the support of the Biotechnology and Biological Sciences Research Council (BBSRC), this research was funded by the BBSRC Institute Strategic Program Gut Microbes and Health BB/R012490/1 and its constituent projects BBS/E/F/000PR10353 and BBS/E/F/000PR10356. H.M.O. was supported by University of Helsinki funding for FINStruct and Instruct-ERIC research infrastructure. S.S. acknowledges partial support from the Special Research Initiative (MAFES), Mississippi State University, and from the National Institute of Food and Agriculture, US Department of Agriculture, Hatch Project 1021494. A.R.M. is a Program Director at the U.S. National Science Foundation (NSF), the statements and opinions expressed herein are made in a personal capacity and do not constitute endorsement by NSF or the government of the United States. D.L.R. is supported by the U.K. Medical Research Council (MC_UU_1201412). F.M.Z. is supported by grants from Capes (Finance code 01), CNPq and Fapemig. P.A.Z. is supported by Suzano Papel e Celulose, Capes (Finance code 01), Conselho Nacional de Desenvolvimento Científico e Tecnológico and Fundação de Amparo à Pesquisa do Estado de Minas Gerais., European Project: 865694,H2020-EU.1.1. - EXCELLENT SCIENCE - European Research Council (ERC),DiversiPHI(2020), Theoretical Biology and Bioinformatics, Sub Bioinformatics, Molecular and Integrative Biosciences Research Programme, and Molecular Principles of Viruses
Subjects: 11832 Microbiology and virology, Writing, viruses, virus species, education, DNA Viruses, Coronacrisis-Taverne, virus nomenclature, General Medicine, Article, taxonomy, ICTV, classification, Virology, Viruses, [SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology, Viruses, Unclassified, Unclassified, Viruses/genetics, health care economics and organizations
Abstract: Following the results of the International Committee on Taxonomy of Viruses (ICTV) Ratification Vote held in March 2021, a standard two-part "binomial nomenclature" is now the norm for naming virus species. Adoption of the new nomenclature is still in its infancy; thus, it is timely to reiterate the distinction between "virus" and "virus species" and to provide guidelines for naming and writing them correctly. Following the results of the International Committee on Taxonomy of Viruses (ICTV) Ratification Vote held in March 2021, a standard two-part "binomial nomenclature" is now the norm for naming virus species. Adoption of the new nomenclature is still in its infancy; thus, it is timely to reiterate the distinction between "virus" and "virus species" and to provide guidelines for naming and writing them correctly.Following the results of the International Committee on Taxonomy of Viruses (ICTV) Ratification Vote held in March 2021, a standard two-part "binomial nomenclature" is now the norm for naming virus species. Adoption of the new nomenclature is still in its infancy; thus, it is timely to reiterate the distinction between "virus" and "virus species" and to provide guidelines for naming and writing them correctly.Following the results of the International Committee on Taxonomy of Viruses (ICTV) Ratification Vote held in March 2021, a standard two-part "binomial nomenclature" is now the norm for naming virus species. Adoption of the new nomenclature is still in its infancy; thus, it is timely to reiterate the distinction between "virus" and "virus species" and to provide guidelines for naming and writing them correctly.Following the results of the International Committee on Taxonomy of Viruses (ICTV) Ratification Vote held in March 2021, a standard two-part "binomial nomenclature" is now the norm for naming virus species. Adoption of the new nomenclature is still in its infancy; thus, it is timely to reiterate the distinction between "virus" and "virus species" and to provide guidelines for naming and writing them correctly.Following the results of the International Committee on Taxonomy of Viruses (ICTV) Ratification Vote held in March 2021, a standard two-part "binomial nomenclature" is now the norm for naming virus species. Adoption of the new nomenclature is still in its infancy; thus, it is timely to reiterate the distinction between "virus" and "virus species" and to provide guidelines for naming and writing them correctly.Following the results of the International Committee on Taxonomy of Viruses (ICTV) Ratification Vote held in March 2021, a standard two-part "binomial nomenclature" is now the norm for naming virus species. Adoption of the new nomenclature is still in its infancy; thus, it is timely to reiterate the distinction between "virus" and "virus species" and to provide guidelines for naming and writing them correctly.Following the results of the International Committee on Taxonomy of Viruses (ICTV) Ratification Vote held in March 2021, a standard two-part "binomial nomenclature" is now the norm for naming virus species. Adoption of the new nomenclature is still in its infancy; thus, it is timely to reiterate the distinction between "virus" and "virus species" and to provide guidelines for naming and writing them correctly.Following the results of the International Committee on Taxonomy of Viruses (ICTV) Ratification Vote held in March 2021, a standard two-part "binomial nomenclature" is now the norm for naming virus species. Adoption of the new nomenclature is still in its infancy; thus, it is timely to reiterate the distinction between "virus" and "virus species" and to provide guidelines for naming and writing them correctly.Following the results of the International Committee on Taxonomy of Viruses (ICTV) Ratification Vote held in March 2021, a standard two-part "binomial nomenclature" is now the norm for naming virus species. Adoption of the new nomenclature is still in its infancy; thus, it is timely to reiterate the distinction between "virus" and "virus species" and to provide guidelines for naming and writing them correctly.Following the results of the International Committee on Taxonomy of Viruses (ICTV) Ratification Vote held in March 2021, a standard two-part "binomial nomenclature" is now the norm for naming virus species. Adoption of the new nomenclature is still in its infancy; thus, it is timely to reiterate the distinction between "virus" and "virus species" and to provide guidelines for naming and writing them correctly.Following the results of the International Committee on Taxonomy of Viruses (ICTV) Ratification Vote held in March 2021, a standard two-part "binomial nomenclature" is now the norm for naming virus species. Adoption of the new nomenclature is still in its infancy; thus, it is timely to reiterate the distinction between "virus" and "virus species" and to provide guidelines for naming and writing them correctly.Following the results of the International Committee on Taxonomy of Viruses (ICTV) Ratification Vote held in March 2021, a standard two-part "binomial nomenclature" is now the norm for naming virus species. Adoption of the new nomenclature is still in its infancy; thus, it is timely to reiterate the distinction between "virus" and "virus species" and to provide guidelines for naming and writing them correctly.Following the results of the International Committee on Taxonomy of Viruses (ICTV) Ratification Vote held in March 2021, a standard two-part "binomial nomenclature" is now the norm for naming virus species. Adoption of the new nomenclature is still in its infancy; thus, it is timely to reiterate the distinction between "virus" and "virus species" and to provide guidelines for naming and writing them correctly.Following the results of the International Committee on Taxonomy of Viruses (ICTV) Ratification Vote held in March 2021, a standard two-part "binomial nomenclature" is now the norm for naming virus species. Adoption of the new nomenclature is still in its infancy; thus, it is timely to reiterate the distinction between "virus" and "virus species" and to provide guidelines for naming and writing them correctly.Following the results of the International Committee on Taxonomy of Viruses (ICTV) Ratification Vote held in March 2021, a standard two-part "binomial nomenclature" is now the norm for naming virus species. Adoption of the new nomenclature is still in its infancy; thus, it is timely to reiterate the distinction between "virus" and "virus species" and to provide guidelines for naming and writing them correctly.Following the results of the International Committee on Taxonomy of Viruses (ICTV) Ratification Vote held in March 2021, a standard two-part "binomial nomenclature" is now the norm for naming virus species. Adoption of the new nomenclature is still in its infancy; thus, it is timely to reiterate the distinction between "virus" and "virus species" and to provide guidelines for naming and writing them correctly. Following the results of the International Committee on Taxonomy of Viruses (ICTV) Ratification Vote held in March 2021, a standard two-part "binomial nomenclature" is now the norm for naming virus species. Adoption of the new nomenclature is still in its infancy; thus, it is timely to reiterate the distinction between "virus" and "virus species" and to provide guidelines for naming and writing them correctly.Following the results of the International Committee on Taxonomy of Viruses (ICTV) Ratification Vote held in March 2021, a standard two-part "binomial nomenclature" is now the norm for naming virus species. Adoption of the new nomenclature is still in its infancy; thus, it is timely to reiterate the distinction between "virus" and "virus species" and to provide guidelines for naming and writing them correctly.Following the results of the International Committee on Taxonomy of Viruses (ICTV) Ratification Vote held in March 2021, a standard two-part "binomial nomenclature" is now the norm for naming virus species. Adoption of the new nomenclature is still in its infancy; thus, it is timely to reiterate the distinction between "virus" and "virus species" and to provide guidelines for naming and writing them correctly.Following the results of the International Committee on Taxonomy of Viruses (ICTV) Ratification Vote held in March 2021, a standard two-part "binomial nomenclature" is now the norm for naming virus species. Adoption of the new nomenclature is still in its infancy; thus, it is timely to reiterate the distinction between "virus" and "virus species" and to provide guidelines for naming and writing them correctly.
Published: 2022

2. ICTV Virus Taxonomy Profile: Belpaoviridae 2021

Author: Soriano, Beatriz, Krupovic, Mart, Llorens, Carlos, Report Consortium, Ictv, Biotechvana [Valencia, Spain], Virologie des archées - Archaeal Virology, Institut Pasteur [Paris], Production of this Profile, the ICTV Report, and associated resources was funded by a grant from the Wellcome Trust (WT108418AIA). B.S. was supported by a pre-doctoral research fellowship from Industrial Doctorates of MINECO (grant 659 DI-17–09134)., Members of the ICTV Report Consortium are Stuart G. Siddell, Elliot J. Lefkowitz, Sead Sabanadzovic, Peter Simmonds, F. Murilo Zerbini, Donald B. Smith and Arvind Varsani., Université Paris Cité (UPCité)-Microbiologie Intégrative et Moléculaire (UMR6047), and Institut Pasteur [Paris] (IP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut Pasteur [Paris] (IP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)
Subjects: Semotivirus, viruses, Terminal Repeat Sequences, Genome, Viral, Virus Replication, Belpaoviridae, Host Specificity, ICTV Virus Taxonomy Profiles, taxonomy, ICTV Profile, [SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology, Animals, Humans, RNA Viruses
Abstract: International audience; The family Belpaoviridae comprises metazoan-infecting reverse-transcribing viruses with long terminal repeats, commonly known as Bel/Pao LTR retrotransposons. These viruses share evolutionary history and genes involved in genome replication and virion formation with reverse-transcribing viruses of the families Metaviridae, Pseudoviridae, Retroviridae and Caulimoviridae. These five families form the order Ortervirales. This is a summary of the ICTV Report on the family Belpaoviridae, which is available at ictv. global/report/belpaoviridae.
Published: 2021

3. Diversity, taxonomy, and evolution of archaeal viruses of the class Caudoviricetes

Author: Liu, Ying, Demina, Tatiana, Roux, Simon, Aiewsakun, Pakorn, Kazlauskas, Darius M., Simmonds, Peter, Prangishvili, David, Oksanen, Hanna, Krupovic, Mart, Virologie des archées - Archaeal Virology, Institut Pasteur [Paris], University of Helsinki, DOE Joint Genome Institute [Walnut Creek], University of Oxford [Oxford], Mahidol University [Bangkok], Vilnius University [Vilnius], Ivane Javakhishvili Tbilisi State University (TSU), This work was supported by l’Agence Nationale de la Recherche grant ANR-20-CE20-0009-02 (to M.K.) and the European Union’s Horizon 2020 research and innovation program under grant agreement 685778, project VIRUS X (to D.P.). Y.L. is a recipient of the Pasteur-Roux-Cantarini Fellowship from Institut Pasteur. The Ella and Georg Ehrnrooth Foundation and the Finnish Cultural Foundation are sincerely acknowledged (grants to T.D.). The work conducted by the U.S. Department of Energy Joint Genome Institute (S.R.) is supported by the Office of Science of the U.S. Department of Energy under contract no. DE-AC02-05CH11231. The development and application of GRAViTy analysis was supported by a grant to PS from the Wellcome Trust (WT108418AIA). The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript., We thank Sari Korhonen, Matti Ylänne, and Carlos Lapedriza for skillful technical assistance. We are also grateful to Marc Monot (Biomics Platform, Institut Pasteur) for help with the sequencing of viral genomes. The facilities and expertise of the HiLIFE Biocomplex unit at the University of Helsinki, a member of Instruct-ERIC Centre Finland, FINStruct, and Biocenter Finland are gratefully acknowledged., ANR-20-CE20-0009,VIROMET,Devoiler le virome des archées methanogenes(2020), European Project: 685778,H2020,H2020-LEIT-BIO-2015-1,Virus-X(2016), Université Paris Cité (UPCité)-Microbiologie Intégrative et Moléculaire (UMR6047), Institut Pasteur [Paris] (IP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut Pasteur [Paris] (IP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Helsingin yliopisto = Helsingfors universitet = University of Helsinki, University of Oxford, Suttle, Curtis, Department of Microbiology, Molecular and Integrative Biosciences Research Programme, Faculty Common Matters (Faculty of Biology and Environmental Sciences), and Molecular Principles of Viruses
Subjects: Archaeal Viruses, FEATURES, Pathology and Laboratory Medicine, Medical and Health Sciences, Biochemistry, Microbial Physiology, Medicine and Health Sciences, TOOL, Viral, Bacterial Physiology, Biology (General), Archaean Biology, Phylogeny, Data Management, Protein Metabolism, 11832 Microbiology and virology, Viral Genomics, Genome, Archaeal Evolution, taxonomy, archaeal viruses, Caudoviricetes, Phylogenetic Analysis, Genomics, Biological Sciences, Biological Evolution, Adhesins, SUBUNITS, Phylogenetics, Infectious Diseases, 1181 Ecology, evolutionary biology, [SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology, Pathogens, PHI-CH1, Infection, Research Article, Computer and Information Sciences, GENES, Archaeal virus, QH301-705.5, Virulence Factors, GENOMES, Genome, Viral, Microbial Genomics, SEQUENCE, Microbiology, Host Specificity, Viral Evolution, Viral Proteins, Virology, Genetics, Evolutionary Systematics, Taxonomy, Evolutionary Biology, COMPLEX, Agricultural and Veterinary Sciences, Virus taxonomy, Organisms, Genetic Variation, Biology and Life Sciences, Bacteriology, DNA, Virus evolution, Archaea, Organismal Evolution, Metabolism, Prokaryotic Cells, DNA, Viral, Mutation, Microbial Evolution, TAILED VIRUSES, Developmental Biology
Abstract: The archaeal tailed viruses (arTV), evolutionarily related to tailed double-stranded DNA (dsDNA) bacteriophages of the class Caudoviricetes, represent the most common isolates infecting halophilic archaea. Only a handful of these viruses have been genomically characterized, limiting our appreciation of their ecological impacts and evolution. Here, we present 37 new genomes of haloarchaeal tailed virus isolates, more than doubling the current number of sequenced arTVs. Analysis of all 63 available complete genomes of arTVs, which we propose to classify into 14 new families and 3 orders, suggests ancient divergence of archaeal and bacterial tailed viruses and points to an extensive sharing of genes involved in DNA metabolism and counterdefense mechanisms, illuminating common strategies of virus–host interactions with tailed bacteriophages. Coupling of the comparative genomics with the host range analysis on a broad panel of haloarchaeal species uncovered 4 distinct groups of viral tail fiber adhesins controlling the host range expansion. The survey of metagenomes using viral hallmark genes suggests that the global architecture of the arTV community is shaped through recurrent transfers between different biomes, including hypersaline, marine, and anoxic environments., Comparative genomics and host range analysis reveals the remarkable diversity and evolution of tailed archaeal viruses of the order Caudoviricetes, which together with their bacterial relatives arguably represent the most abundant and widespread virus group on our planet.
Published: 2021

4. Bacterial Viruses Subcommittee and Archaeal Viruses Subcommittee of the ICTV: Update of taxonomy changes in 2021

Author: Krupovic, Mart, Turner, Dann, Morozova, Vera, Dyall-Smith, Mike, Oksanen, Hanna M., Edwards, Rob, Dutilh, Bas E., Lehman, Susan M., Reyes, Alejandro, Baquero, Diana P., Sullivan, Matthew B., Uchiyama, Jumpei, Nakavuma, Jesca, Barylski, Jakub, Young, Mark J., Du, Shishen, Alfenas-Zerbini, Poliane, Kushkina, Alla, Kropinski, Andrew M., Kurtboke, Ipek, Brister, J. Rodney, Lood, Cedric, Sarkar, B. L., Yigang, Tong, Liu, Ying, Huang, Li, Wittmann, Johannes, Chanishvili, Nina, van Zyl, Leonardo J., Rumnieks, Janis, Mochizuki, Tomohiro, Jalasvuori, Matti, Aziz, Ramy K., Lobocka, Malgorzata, Stedman, Kenneth M., Shkoporov, Andrey N., Gillis, Annika, Peng, Xu, Enault, Francois, Knezevic, Petar, Lavigne, Rob, Rhee, Sung-Keun, Cvirkaite-Krupovic, Virginija, Moraru, Cristina, Moreno Switt, Andrea I., Poranen, Minna M., Millard, Andrew, Prangishvili, David, Adriaenssens, Evelien M., Sub Bioinformatics, Theoretical Biology and Bioinformatics, UCL - SST/ELI/ELIM - Applied Microbiology, Sub Bioinformatics, Theoretical Biology and Bioinformatics, Virologie des archées - Archaeal Virology, Institut Pasteur [Paris], University of the West of England [Bristol] (UWE Bristol), Institute of Chemical Biology and Fundamental Medicine [Novosibirsk, Russia] (ICBFM SB RAS), Siberian Branch of the Russian Academy of Sciences (SB RAS), University of Melbourne, University of Helsinki, Flinders Accelerator for Microbiome Exploration [Adelaide, Australia], Utrecht University [Utrecht], U.S. Food and Drug Administration (FDA), Universidad de los Andes [Bogota] (UNIANDES), Ohio State University [Columbus] (OSU), Azabu University, Makerere University [Kampala, Ouganda] (MAK), Adam Mickiewicz University in Poznań (UAM), Montana State University (MSU), Wuhan University [China], Universidade Federal de Vicosa (UFV), National Academy of Sciences of Ukraine (NASU), University of Guelph, University of the Sunshine Coast (USC), National Institutes of Health [Bethesda] (NIH), Catholic University of Leuven - Katholieke Universiteit Leuven (KU Leuven), Indian Council of Medical Research [New Dehli] (ICMR), Beijing University of Chemical Technology, Chinese Academy of Sciences [Beijing] (CAS), Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH / Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures (DSMZ), George Eliava Institute of Bacteriophages, Microbiology and Virology [Tbilisi, Georgia], University of the Western Cape, Latvian Biomedical Research and Study Centre [Rīga], Tokyo Institute of Technology [Tokyo] (TITECH), University of Jyväskylä (JYU), Cairo University, Polish Academy of Sciences (PAN), Portland State University [Portland] (PSU), University College Cork (UCC), Université Catholique de Louvain = Catholic University of Louvain (UCL), University of Copenhagen = Københavns Universitet (KU), Laboratoire Microorganismes : Génome et Environnement (LMGE), Centre National de la Recherche Scientifique (CNRS)-Université Clermont Auvergne (UCA), University of Novi Sad, Chungbuk National University, University of Oldenburg, Pontificia Universidad Católica de Chile (UC), University of Leicester, Ivane Javakhishvili Tbilisi State University (TSU), Quadram Institute, V.M. was supported by Russian Ministry of Education and Science Project No. 0245-2021-0008, H.M.O. was supported by University of Helsinki funding for FINStruct and Instruct-ERIC research infrastructure, R.A.E. was supported by the National Institute Of Diabetes And Digestive And Kidney Diseases of the National Institutes of Health under Award Number RC2DK116713, B.E.D. was supported by the European Research Council (ERC) Consolidator grant 865694: DiversiPHI, M.B.S. was supported by National Science Foundation Advances in Biological Infrastructure award #1758974, M.Y. acknowledges funding by the Gordon and Betty Moore Foundation grant GBMF9195, S.D. was supported by National Natural Science Foundation of of China grant 32070032, C.L. is supported by the Fonds Wetenschappelijk Onderzoek (1S64718N), L.H. was funded by the Strategic Priority Research Program of the Chinese Academy of Sciences Award XDB42000000,National Natural Science Foundation of China (NSFC) grant 31970170, T.M. was supported by JSPS KAKENHI Grant Numbers 21H02100, 19H04827, 18K14372, and JST JPMJJR2005, and SUMITOMO Fund 200673, MJ is supported by Academy of Finland grants #336518 and #297049 and Jane and Aatos Erkko Foundation, R.K.A. is supported by the Egyptian Academy of Scientific Research and Technology (ASRT) project #3046 (JESOR), M.L. is supported by the statutory funds for the Institute of Biochemistry and Biophysics of the Polish Academy of Sciences, K.M.S. is supported by the US. National Science Foundation (MCB1929273 and MCB2025305), A.N.S. is supported by Wellcome Trust Research Career Development Fellowship (220646/Z/20/Z) and by European Research Council (ERC) grant under the European Union’s Horizon 2020 research and innovation programme (grant agreement 101001684), X.P. is supported by Novo Nordisk Foundation/Hallas-Møller Ascending Investigator Grant (grant number NNF17OC0031154) and the Danish Council for Independent Research/FNU (grant number DFF–0135-00402), S.K.R. was supported by the National Research Foundation of Korea (NRF) grants funded by the Ministry of Science, ICT & Future Planning (2021R1A2C3004015), C.M. acknowledges funding by the Deutsche Forschungsgemeinschaft within the Collaborative Research Center TRR51 Roseobacter (INST 184/170-1), M.M.P. acknowledges funding from the Academy of Finland (grant 331627) and the Sigrid Juselius Foundation, E.M.A. gratefully acknowledges funding by the Biotechnology and Biological Sciences Research Council (BBSRC), this research was funded by the BBSRC Institute Strategic Programme Gut Microbes and Health BB/R012490/1 and its constituent projects BBS/E/F/000PR10353 and BBS/E/F/000PR10356., European Project: 865694,H2020-EU.1.1. - EXCELLENT SCIENCE - European Research Council (ERC),DiversiPHI(2020), European Project: 101001684,ERC-2020-COG,PHAGENET(2021), Université Paris Cité (UPCité)-Microbiologie Intégrative et Moléculaire (UMR6047), Institut Pasteur [Paris] (IP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut Pasteur [Paris] (IP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Helsingin yliopisto = Helsingfors universitet = University of Helsinki, Universidade Federal de Viçosa = Federal University of Viçosa (UFV), University of the Western Cape (UWC), University of Copenhagen = Københavns Universitet (UCPH), Biotechnology and Biological Sciences Research Council (BBSRC), Molecular and Integrative Biosciences Research Programme, and Molecular and Translational Virology
Subjects: Archaeal Viruses, Societies, Scientific, virukset, Library science, Biology, bakteriofagit, Executive committee, 03 medical and health sciences, Virology Division News, Virology, viruses, Bacteriophages, 030304 developmental biology, Taxonomy, 11832 Microbiology and virology, 0303 health sciences, Science & Technology, Bacteria, 030306 microbiology, systematiikka (biologia), General Medicine, Archaea, virologia, [SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology, Taxonomy (biology), Bacterial virus, Life Sciences & Biomedicine
Abstract: In this article, we – the Bacterial Viruses Subcommittee and the Archaeal Viruses Subcommittee of the International Committee on Taxonomy of Viruses (ICTV) – summarise the results of our activities for the period March 2020 – March 2021. We report the division of the former Bacterial and Archaeal Viruses Subcommittee in two separate Subcommittees, welcome new members, a new Subcommittee Chair and Vice Chair, and give an overview of the new taxa that were proposed in 2020, approved by the Executive Committee and ratified by vote in 2021. In particular, a new realm, three orders, 15 families, 31 subfamilies, 734 genera and 1845 species were newly created or redefined (moved/promoted). Supplementary Information The online version contains supplementary material available at 10.1007/s00705-021-05205-9.
Published: 2021

5. Four principles to establish a universal virus taxonomy.

Author: Simmonds, Peter, Adriaenssens, Evelien M., Zerbini, F. Murilo, Abrescia, Nicola G. A., Aiewsakun, Pakorn, Alfenas-Zerbini, Poliane, Bao, Yiming, Barylski, Jakub, Drosten, Christian, Duffy, Siobain, Duprex, W. Paul, Dutilh, Bas E., Elena, Santiago F., García, Maria Laura, Junglen, Sandra, Katzourakis, Aris, Koonin, Eugene V., Krupovic, Mart, Kuhn, Jens H., and Lambert, Amy J.
Subjects: ARBOVIRUSES, HIV, TAXONOMY, VIRUS diversity, COMMUNITIES
Abstract: A universal taxonomy of viruses is essential for a comprehensive view of the virus world and for communicating the complicated evolutionary relationships among viruses. However, there are major differences in the conceptualisation and approaches to virus classification and nomenclature among virologists, clinicians, agronomists, and other interested parties. Here, we provide recommendations to guide the construction of a coherent and comprehensive virus taxonomy, based on expert scientific consensus. Firstly, assignments of viruses should be congruent with the best attainable reconstruction of their evolutionary histories, i.e., taxa should be monophyletic. This fundamental principle for classification of viruses is currently included in the International Committee on Taxonomy of Viruses (ICTV) code only for the rank of species. Secondly, phenotypic and ecological properties of viruses may inform, but not override, evolutionary relatedness in the placement of ranks. Thirdly, alternative classifications that consider phenotypic attributes, such as being vector-borne (e.g., "arboviruses"), infecting a certain type of host (e.g., "mycoviruses," "bacteriophages") or displaying specific pathogenicity (e.g., "human immunodeficiency viruses"), may serve important clinical and regulatory purposes but often create polyphyletic categories that do not reflect evolutionary relationships. Nevertheless, such classifications ought to be maintained if they serve the needs of specific communities or play a practical clinical or regulatory role. However, they should not be considered or called taxonomies. Finally, while an evolution-based framework enables viruses discovered by metagenomics to be incorporated into the ICTV taxonomy, there are essential requirements for quality control of the sequence data used for these assignments. Combined, these four principles will enable future development and expansion of virus taxonomy as the true evolutionary diversity of viruses becomes apparent. Transforming an existing phenotypic classification of viruses into one based on evolutionary relationships that can accommodate the vast number of viruses characterized in metagenomics and environmental studies is an ongoing challenge. This Consensus View explains how such a taxonomy can be expanded to encapsulate viral diversity and to recognize independent biological origins of different virus groups. [ABSTRACT FROM AUTHOR]
Published: 2023
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6. ICTV Virus Taxonomy Profile: Thaspiviridae 2021

Author: Kim, Jong-Geol, Gazi, Khaled, Krupovic, Mart, Rhee, Sung-Keun, Report Consortium, Ictv, Wonkwang University, Chungbuk National University, Virologie des archées - Archaeal Virology, Institut Pasteur [Paris], Production of this Profile, the ICTV Report, and associated resources was funded by a grant from the Wellcome Trust (WT108418AIA) and the National Research Foundation of Korea (NRF) grants funded by the Ministry of Science, ICT & Future Planning (2021R1A2C3004015)., Members of the ICTV Report Consortium are Stuart G. Siddell, Elliot J. Lefkowitz, Sead Sabanadzovic, Peter Simmonds, F. Murilo Zerbini, Donald B. Smith, Richard J. Orton and Mart Krupovic, Université Paris Cité (UPCité)-Microbiologie Intégrative et Moléculaire (UMR6047), and Institut Pasteur [Paris] (IP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut Pasteur [Paris] (IP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)
Subjects: 0303 health sciences, Thaumarchaeota, biology, Phylum, viruses, 030302 biochemistry & molecular biology, Nitrosopumilus, Fuselloviridae, Thaspiviridae, biology.organism_classification, Virology, Virus, 3. Good health, 03 medical and health sciences, taxonomy, Viral replication, Lytic cycle, [SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology, ICTV Report, Virus classification, 030304 developmental biology
Abstract: Members of the family Thaspiviridae have linear dsDNA genomes of 27 to 29 kbp and are the first viruses known to infect mesophilic ammonia-oxidizing archaea of the phylum Thaumarchaeota. The spindle-shaped virions of Nitrosopumilus spindle-shaped virus 1 possess short tails at one pole and measure 64±3 nm in diameter and 112±6 nm in length. This morphology is similar to that of members of the families Fuselloviridae and Halspiviridae. Virus replication is not lytic but leads to growth inhibition of the host. This is a summary of the International Committee on Taxonomy of Viruses (ICTV) Report on the family Thaspiviridae, which is available at ictv.global/report/thaspiviridae.
Published: 2021

7. Recent changes to virus taxonomy ratified by the International Committee on Taxonomy of Viruses (2022).

Author: Walker, Peter J., Siddell, Stuart G., Lefkowitz, Elliot J., Mushegian, Arcady R., Adriaenssens, Evelien M., Alfenas-Zerbini, Poliane, Dempsey, Donald M., Dutilh, Bas E., García, María Laura, Curtis Hendrickson, R., Junglen, Sandra, Krupovic, Mart, Kuhn, Jens H., Lambert, Amy J., Łobocka, Małgorzata, Oksanen, Hanna M., Orton, Richard J., Robertson, David L., Rubino, Luisa, and Sabanadzovic, Sead
Subjects: TAXONOMY, MANAGEMENT committees
Abstract: This article reports the changes to virus taxonomy approved and ratified by the International Committee on Taxonomy of Viruses (ICTV) in March 2022. The entire ICTV was invited to vote on 174 taxonomic proposals approved by the ICTV Executive Committee at its annual meeting in July 2021. All proposals were ratified by an absolute majority of the ICTV members. Of note, the Study Groups have started to implement the new rule for uniform virus species naming that became effective in 2021 and mandates the binomial 'Genus_name species_epithet' format with or without Latinization. As a result of this ratification, the names of 6,481 virus species (more than 60 percent of all species names currently recognized by ICTV) now follow this format. [ABSTRACT FROM AUTHOR]
Published: 2022
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8. ICTV Virus Taxonomy Profile: Pseudoviridae

Author: Llorens, Carlos, Soriano, Beatriz, Krupovic, Mart, Report Consortium, Ictv, Biotechvana [Valencia, Spain], Virologie des archées - Archaeal Virology, Institut Pasteur [Paris], B.S. was supported by the pre-doctoral research fellowship from Industrial Doctorates of MINECO (Grant 659 DI-17-09134). Production of this Profile, the ICTV Report, and associated resources was funded by a grant from the Wellcome Trust (WT108418AIA)., Members of the ICTV Report Consortium are Stuart G. Siddell, Andrew J. Davison, Elliot J. Lefkowitz, Sead Sabanadzovic, Peter Simmonds, Donald B. Smith, Richard J. Orton and Balázs Harrach., and Institut Pasteur [Paris] (IP)
Subjects: 0301 basic medicine, INT, Retroelements, taxonomy. Abbreviations: CP, viruses, LTR, 030106 microbiology, nucleocapsid, Retrotransposon, Genome, Viral, Virus Replication, virus-like particles, Genome, Virus, PR, RT, PPT, 03 medical and health sciences, taxonomy, Virology, VLP, Retroviruses, reverse transcriptase, ICTV Report, capsid, RNA Viruses, PBS, Virus classification, biology, Animal, fungi, Terminal Repeat Sequences, Pseudoviridae, protease, polypurine tract, biology.organism_classification, Long terminal repeat, long terminal repeat, 030104 developmental biology, [SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology, RNA, Viral, integrase, RH, NC, Ictv Virus Taxonomy Profile, ribonuclease H, primer binding site
Abstract: Pseudoviridae is a family of reverse-transcribing viruses with long terminal repeats (LTRs) belonging to the order Ortervirales. Pseudoviruses are commonly found integrated in the genomes of diverse plants, fungi and animals and are broadly known as Ty1/Copia LTR retrotransposons. Inside the cell, they form icosahedral virus particles, but unlike most other viruses, do not have an extracellular phase. This is a summary of the ICTV Report on the family Pseudoviridae, which is available at ictv.global/report/pseudoviridae.
Published: 2021

9. Changes to virus taxonomy and to the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2021)

Author: Walker, Peter J, Siddell, Stuart G, Lefkowitz, Elliot J, Mushegian, Arcady R, Adriaenssens, Evelien M, Alfenas-Zerbini, Poliane, Davison, Andrew J, Dempsey, Donald M, Dutilh, Bas E, García, María Laura, Harrach, Balázs, Harrison, Robert L, Hendrickson, R Curtis, Junglen, Sandra, Knowles, Nick J, Krupovic, Mart, Kuhn, Jens H, Lambert, Amy J, Łobocka, Małgorzata, Nibert, Max L, Oksanen, Hanna M, Orton, Richard J, Robertson, David L, Rubino, Luisa, Sabanadzovic, Sead, Simmonds, Peter, Smith, Donald B, Suzuki, Nobuhiro, Van Dooerslaer, Koenraad, Vandamme, Anne-Mieke, Varsani, Arvind, Zerbini, Francisco Murilo, Sub Bioinformatics, Theoretical Biology and Bioinformatics, Instituto de Higiene e Medicina Tropical (IHMT), Global Health and Tropical Medicine (GHTM), TB, HIV and opportunistic diseases and pathogens (THOP), University of Queensland [Brisbane], University of Bristol [Bristol], University of Alabama at Birmingham [ Birmingham] (UAB), National Science Foundation [Arlington] (NSF), Quadram Institute Biosciences, Universidade Federal de Vicosa (UFV), MRC - University of Glasgow Centre for Virus Research, Utrecht University [Utrecht], Consejo Nacional de Investigaciones Científicas y Técnicas [Buenos Aires] (CONICET), Institute for Veterinary Medical Research [Budapest] (AOTI), Centre for Agricultural Research [Budapest] (ATK), Hungarian Academy of Sciences (MTA)-Hungarian Academy of Sciences (MTA), Invasive Insect Biocontrol and Behavior Laboratory [Beltsville, USA], USDA Agricultural Research Service [Beltsville, Maryland], USDA-ARS : Agricultural Research Service-USDA-ARS : Agricultural Research Service, Charité - UniversitätsMedizin = Charité - University Hospital [Berlin], Institute for Animal Health, the Pirbright Institute, Virologie des archées - Archaeal Virology, Institut Pasteur [Paris], Integrated Research Facility at Fort Detrick (IRF-Frederick), National Institute of Allergy and Infectious Diseases [Bethesda] (NIAID-NIH), National Institutes of Health [Bethesda] (NIH)-National Institutes of Health [Bethesda] (NIH), Centers for Disease Control and Prevention, Polish Academy of Sciences (PAN), Harvard Medical School [Boston] (HMS), University of Helsinki, Istituto per la Protezione Sostenibile delle Piante (CNR-IPSP), UOS Torino, Mississippi State University [Mississippi], University of Oxford [Oxford], Okayama University, University of Arizona, Catholic University of Leuven - Katholieke Universiteit Leuven (KU Leuven), Universidade Nova de Lisboa = NOVA University Lisbon (NOVA), Arizona State University [Tempe] (ASU), E.M.A. gratefully acknowledges funding by the U.K. Biotechnology and Biological Sciences Research Council (BBSRC), this research was funded by the BBSRC Institute Strategic Programme Gut Microbes and Health BB/R012490/1 and its constituent projects BBS/E/F/000PR10353 and BBS/E/F/000PR10356. A.J.D. is supported by the U.K. Medical Research Council (MC_UU_12014/3). B.E.D. is supported by Netherlands Organization for Scientific Research (NWO) Vidi grant 864.14.004. B.H. is supported by the National Research, Development and Innovation Office—NKFIH (NN128309). N.J.K. is partially supported by core funding provided by the Biotechnology and Biological Sciences Research Council, UK. Mention of trade names or commercial products in this publication is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the U.S. Department of Agriculture. USDA is an Equal Opportunity Provider and Employer. This work was supported in part through Laulima Government Solutions, LLC prime contract with the US National Institute of Allergy and Infectious Diseases (NIAID) under Contract No. HHSN272201800013C. J.H.K. performed this work as an employee of Tunnell Government Services (TGS), a subcontractor of Laulima Government Solutions, LLC under Contract No. HHSN272201800013C. A.R.M. is a Program Director at the U.S. National Science Foundation (NSF), the statements and opinions expressed herein are made in a personal capacity and do not constitute endorsement by NSF or the government of the United States. H.M.O was supported by the University of Helsinki and Academy of Finland by funding for FINStruct and Instruct Centre FI, part of Biocenter Finland and Instruct-ERIC. D.L.R. is supported by the U.K. Medical Research Council (MC_UU_1201412). R.J.O. and D.B.S. are supported by the Wellcome Trust (WT108418AIA). S.S. acknowledges partial support from the Special Research Initiative (MAFES), Mississippi State University, and from the National Institute of Food and Agriculture, US Department of Agriculture, Hatch Project 1021494. Except for Donald M. Dempsey, R. Curtis Hendrickson, Richard J. Orton and Donald B. Smith, the authors were members of the ICTV Executive Committee during the relevant period. The views and conclusions contained in this document are those of the authors and should not be interpreted as necessarily representing the official policies, either expressed or implied, of the US Department of Health and Human Services, or of the institutions and companies affiliated with the authors., Sub Bioinformatics, Theoretical Biology and Bioinformatics, Quadram Institute Bioscience [Norwich, U.K.] (QIB), Biotechnology and Biological Sciences Research Council (BBSRC), Universidade Federal de Viçosa = Federal University of Viçosa (UFV), The Pirbright Institute, Université Paris Cité (UPCité)-Microbiologie Intégrative et Moléculaire (UMR6047), Institut Pasteur [Paris] (IP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut Pasteur [Paris] (IP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Helsingin yliopisto = Helsingfors universitet = University of Helsinki, CNR Istituto per la Protezione Sostenibile delle Piante [Torino, Italia] (IPSP), National Research Council of Italy | Consiglio Nazionale delle Ricerche (CNR), University of Oxford, and Molecular and Integrative Biosciences Research Programme
Subjects: International Cooperation, education, virus, Viroids/classification, Viruses, Unclassified/classification, MESH: Viruses, ICTV, 03 medical and health sciences, SDG 17 - Partnerships for the Goals, SDG 3 - Good Health and Well-being, Virology, Taverne, SDG 14 - Life Below Water, MESH: Phylogeny, Phylogeny, Taxonomy, 030304 developmental biology, SDG 15 - Life on Land, 11832 Microbiology and virology, 0303 health sciences, Unclassified/classification, Code, 030306 microbiology, Viruses/classification, General Medicine, Classification, Viroids, 3. Good health, MESH: Viroids, MESH: Classification, MESH: International Cooperation, [SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology, Viruses, MESH: Viruses, Unclassified, Viruses, Unclassified, Classification/methods
Abstract: Funding Information: E.M.A. gratefully acknowledges funding by the U.K. Biotechnology and Biological Sciences Research Council (BBSRC); this research was funded by the BBSRC Institute Strategic Programme Gut Microbes and Health BB/R012490/1 and its constituent projects BBS/E/F/000PR10353 and BBS/E/F/000PR10356. A.J.D. is supported by the U.K. Medical Research Council (MC_UU_12014/3). B.E.D. is supported by Netherlands Organization for Scientific Research (NWO) Vidi grant 864.14.004. B.H. is supported by the National Research, Development and Innovation Office—NKFIH (NN128309). N.J.K. is partially supported by core funding provided by the Biotechnology and Biological Sciences Research Council, UK. Mention of trade names or commercial products in this publication is solely for the purpose of providing specific information and does not imply recommendation or endorsement by the U.S. Department of Agriculture. USDA is an Equal Opportunity Provider and Employer. This work was supported in part through Laulima Government Solutions, LLC prime contract with the US National Institute of Allergy and Infectious Diseases (NIAID) under Contract No. HHSN272201800013C. J.H.K. performed this work as an employee of Tunnell Government Services (TGS), a subcontractor of Laulima Government Solutions, LLC under Contract No. HHSN272201800013C. A.R.M. is a Program Director at the U.S. National Science Foundation (NSF); the statements and opinions expressed herein are made in a personal capacity and do not constitute endorsement by NSF or the government of the United States. H.M.O was supported by the University of Helsinki and Academy of Finland by funding for FINStruct and Instruct Centre FI, part of Biocenter Finland and Instruct-ERIC. D.L.R. is supported by the U.K. Medical Research Council (MC_UU_1201412). R.J.O. and D.B.S. are supported by the Wellcome Trust (WT108418AIA). S.S. acknowledges partial support from the Special Research Initiative (MAFES), Mississippi State University, and from the National Institute of Food and Agriculture, US Department of Agriculture, Hatch Project 1021494. Except for Donald M. Dempsey, R. Curtis Hendrickson, Richard J. Orton and Donald B. Smith, the authors were members of the ICTV Executive Committee during the relevant period. The views and conclusions contained in this document are those of the authors and should not be interpreted as necessarily representing the official policies, either expressed or implied, of the US Department of Health and Human Services, or of the institutions and companies affiliated with the authors. Publisher Copyright: © 2021, This is a U.S. government work and not under copyright protection in the U.S.; foreign copyright protection may apply. This article reports the changes to virus taxonomy approved and ratified by the International Committee on Taxonomy of Viruses (ICTV) in March 2021. The entire ICTV was invited to vote on 290 taxonomic proposals approved by the ICTV Executive Committee at its meeting in October 2020, as well as on the proposed revision of the International Code of Virus Classification and Nomenclature (ICVCN). All proposals and the revision were ratified by an absolute majority of the ICTV members. Of note, ICTV mandated a uniform rule for virus species naming, which will follow the binomial 'genus-species' format with or without Latinized species epithets. The Study Groups are requested to convert all previously established species names to the new format. ICTV has also abolished the notion of a type species, i.e., a species chosen to serve as a name-bearing type of a virus genus. The remit of ICTV has been clarified through an official definition of ‘virus’ and several other types of mobile genetic elements. The ICVCN and ICTV Statutes have been amended to reflect these changes. publishersversion inpress
Published: 2021

10. 2021 Taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales

Author: Kuhn, Jens H, Adkins, Scott, Agwanda, Bernard R, Al Kubrusli, Rim, Alkhovsky, Sergey V, Amarasinghe, Gaya K, Avšič-Županc, Tatjana, Ayllón, María A, Bahl, Justin, Balkema-Buschmann, Anne, Ballinger, Matthew J, Basler, Christopher F, Bavari, Sina, Beer, Martin, Bejerman, Nicolas, Bennett, Andrew J, Bente, Dennis A, Bergeron, Éric, Bird, Brian H, Blair, Carol D, Blasdell, Kim R, Blystad, Dag-Ragnar, Bojko, Jamie, Borth, Wayne B, Bradfute, Steven, Breyta, Rachel, Briese, Thomas, Brown, Paul A, Brown, Judith K, Buchholz, Ursula J, Buchmeier, Michael J, Bukreyev, Alexander, Burt, Felicity, Büttner, Carmen, Calisher, Charles H, Cao, Mengji, Casas, Inmaculada, Chandran, Kartik, Charrel, Rémi N, Cheng, Qi, Chiaki, Yuya, Chiapello, Marco, Choi, Il-Ryong, Ciuffo, Marina, Clegg, J Christopher S, Crozier, Ian, Dal Bó, Elena, de la Torre, Juan Carlos, de Lamballerie, Xavier, de Swart, Rik L, Debat, Humberto, Dheilly, Nolwenn M, Di Cicco, Emiliano, Di Paola, Nicholas, Di Serio, Francesco, Dietzgen, Ralf G, Digiaro, Michele, Dolnik, Olga, Drebot, Michael A, Drexler, J Felix, Dundon, William G, Duprex, W Paul, Dürrwald, Ralf, Dye, John M, Easton, Andrew J, Ebihara, Hideki, Elbeaino, Toufic, Ergünay, Koray, Ferguson, Hugh W, Fooks, Anthony R, Forgia, Marco, Formenty, Pierre B H, Fránová, Jana, Freitas-Astúa, Juliana, Fu, Jingjing, Fürl, Stephanie, Gago-Zachert, Selma, Gāo, George Fú, García, María Laura, García-Sastre, Adolfo, Garrison, Aura R, Gaskin, Thomas, Gonzalez, Jean-Paul J, Griffiths, Anthony, Goldberg, Tony L, Groschup, Martin H, Günther, Stephan, Hall, Roy A, Hammond, John, Han, Tong, Hepojoki, Jussi, Hewson, Roger, Hong, Jiang, Hong, Ni, Hongo, Seiji, Horie, Masayuki, Hu, John S, Hu, Tao, Hughes, Holly R, Hüttner, Florian, Hyndman, Timothy H, Ilyas, M, Jalkanen, Risto, Jiāng, Dàohóng, Jonson, Gilda B, Junglen, Sandra, Kadono, Fujio, Kaukinen, Karia H, Kawate, Michael, Klempa, Boris, Klingström, Jonas, Kobinger, Gary, Koloniuk, Igor, Kondō, Hideki, Koonin, Eugene V, Krupovic, Mart, Kubota, Kenji, Kurath, Gael, Laenen, Lies, Lambert, Amy J, Langevin, Stanley L, Lee, Benhur, Lefkowitz, Elliot J, Leroy, Eric M, Li, Shaorong, Li, Longhui, Lǐ, Jiànróng, Liu, Huazhen, Lukashevich, Igor S, Maes, Piet, de Souza, William Marciel, Marklewitz, Marco, Marshall, Sergio H, Marzano, Shin-Yi L, Massart, Sebastien, McCauley, John W, Melzer, Michael, Mielke-Ehret, Nicole, Miller, Kristina M, Ming, Tobi J, Mirazimi, Ali, Mordecai, Gideon J, Mühlbach, Hans-Peter, Mühlberger, Elke, Naidu, Rayapati, Natsuaki, Tomohide, Navarro, José A, Netesov, Sergey V, Neumann, Gabriele, Nowotny, Norbert, Nunes, Márcio R T, Olmedo-Velarde, Alejandro, Palacios, Gustavo, Pallás, Vicente, Pályi, Bernadett, Papa, Anna, Paraskevopoulou, Sofia, Park, Adam C, Parrish, Colin R, Patterson, David A, Pauvolid-Corrêa, Alex, Pawęska, Janusz T, Payne, Susan, Peracchio, Carlotta, Pérez, Daniel R, Postler, Thomas S, Qi, Liying, Radoshitzky, Sheli R, Resende, Renato O, Reyes, Carina A, Rima, Bertus K, Luna, Gabriel Robles, Romanowski, Víctor, Rota, Paul, Rubbenstroth, Dennis, Rubino, Luisa, Runstadler, Jonathan A, Sabanadzovic, Sead, Sall, Amadou Alpha, Salvato, Maria S, Sang, Rosemary, Sasaya, Takahide, Schulze, Angela D, Schwemmle, Martin, Shi, Mang, Shí, Xiǎohóng, Shí, Zhènglì, Shimomoto, Yoshifumi, Shirako, Yukio, Siddell, Stuart G, Simmonds, Peter, Sironi, Manuela, Smagghe, Guy, Smither, Sophie, Song, Jin-Won, Spann, Kirsten, Spengler, Jessica R, Stenglein, Mark D, Stone, David M, Sugano, Jari, Suttle, Curtis A, Tabata, Amy, Takada, Ayato, Takeuchi, Shigeharu, Tchouassi, David P, Teffer, Amy, Tesh, Robert B, Thornburg, Natalie J, Tomitaka, Yasuhiro, Tomonaga, Keizō, Tordo, Noël, Torto, Baldwyn, Towner, Jonathan S, Tsuda, Shinya, Tu, Changchun, Turina, Massimo, Tzanetakis, Ioannis E, Uchida, Janice, Usugi, Tomio, Vaira, Anna Maria, Vallino, Marta, van den Hoogen, Bernadette, Varsani, Arvind, Vasilakis, Nikos, Verbeek, Martin, von Bargen, Susanne, Wada, Jiro, Wahl, Victoria, Walker, Peter J, Wang, Lin-Fa, Wang, Guoping, Wang, Yanxiang, Wang, Yaqin, Waqas, Muhammad, Wèi, Tàiyún, Wen, Shaohua, Whitfield, Anna E, Williams, John V, Wolf, Yuri I, Wu, Jiangxiang, Xu, Lei, Yanagisawa, Hironobu, Yang, Caixia, Yang, Zuokun, Zerbini, F Murilo, Zhai, Lifeng, Zhang, Yong-Zhen, Zhang, Song, Zhang, Jinguo, Zhang, Zhe, Zhou, Xueping, Kuhn, Jens H., Agwanda, Bernard R., Alkhovsky, Sergey V., Amarasinghe, Gaya K., Ayllón, María A., Ballinger, Matthew J., Basler, Christopher F., Bennett, Andrew J., Bente, Dennis A., Bird, Brian H., Blair, Carol D., Blasdell, Kim R., Borth, Wayne B., Brown, Paul A., Brown, Judith K., Buchholz, Ursula J., Buchmeier, Michael J., Calisher, Charles H., Charrel, Rémi N., Clegg, J. Christopher S., de Swart, Rik L., Dheilly, Nolwenn M., Dietzgen, Ralf G., Drebot, Michael A., Drexler, J. Felix, Dundon, William G., Duprex, W. Paul, Dye, John M., Easton, Andrew J., Ferguson, Hugh W., Fooks, Anthony R., Formenty, Pierre B. H., Garrison, Aura R., Gonzalez, Jean-Paul J., Goldberg, Tony L., Groschup, Martin H., Hall, Roy A., Hu, John S., Hughes, Holly R., Hyndman, Timothy H., Ilyas, M., Jonson, Gilda B., Kaukinen, Karia H., Koonin, Eugene V., Lambert, Amy J., Langevin, Stanley L., Lefkowitz, Elliot J., Leroy, Eric M., Lukashevich, Igor S., Marshall, Sergio H., Marzano, Shin-Yi L., McCauley, John W., Miller, Kristina M., Ming, Tobi J., Mordecai, Gideon J., Navarro, José A., Netesov, Sergey V., Nunes, Márcio R. T., Park, Adam C., Parrish, Colin R., Patterson, David A., Pawęska, Janusz T., Pérez, Daniel R., Postler, Thomas S., Radoshitzky, Sheli R., Resende, Renato O., Reyes, Carina A., Rima, Bertus K., Runstadler, Jonathan A., Salvato, Maria S., Schulze, Angela D., Siddell, Stuart G., Spengler, Jessica R., Stenglein, Mark D., Stone, David M., Suttle, Curtis A., Tchouassi, David P., Tesh, Robert B., Thornburg, Natalie J., Towner, Jonathan S., Tzanetakis, Ioannis E., Walker, Peter J., Whitfield, Anna E., Williams, John V., Wolf, Yuri I., Zerbini, F. Murilo, NIH - National Institute of Allergy and Infectious Diseases (NIAID) (Estados Unidos), NIH - National Cancer Institute (NCI) (Estados Unidos), National Institutes of Health (Estados Unidos), United States Department of Agriculture. National Institute of Food and Agriculture, Cancer Research UK (Reino Unido), Medical Research Council (Reino Unido), Wellcome Trust, Mississippi State University (Estados Unidos), Battelle National Biodefense Institute, National Biodefense Analysis and Countermeasures Center, Tunnell Government Services (Estados Unidos), National Institute of Allergy and Infectious Diseases [Bethesda] (NIAID-NIH), National Institutes of Health [Bethesda] (NIH), U.S. Horticultural Research Laboratory ( Fort Pierce, USA), United States Department of Agriculture (USDA), Jomo Kenyatta University of Agriculture and Technology (JKUAT), National Museums of Kenya, Humboldt University Of Berlin, Ministry of Health and Social Development of Russian Federation [Moscow], Washington University School of Medicine in St. Louis, Washington University in Saint Louis (WUSTL), University of Ljubljana, Universidad Politécnica de Madrid (UPM), University of Georgia [USA], Institute of Novel and Emerging Infectious Diseases (INNT), Friedrich-Loeffler-Institut (FLI), Laboratoire de Ploufragan-Plouzané-Niort [ANSES], Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail (ANSES), Unité des Virus Emergents (UVE), Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut National de la Santé et de la Recherche Médicale (INSERM), Virologie UMR1161 (VIRO), École nationale vétérinaire - Alfort (ENVA)-Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail (ANSES)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Virologie des archées - Archaeal Virology, Université Paris Cité (UPCité)-Microbiologie Intégrative et Moléculaire (UMR6047), Institut Pasteur [Paris] (IP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut Pasteur [Paris] (IP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS), Maladies infectieuses et vecteurs : écologie, génétique, évolution et contrôle (MIVEGEC), Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud]), Stratégies antivirales, Institut Pasteur [Paris] (IP), Centre collaborateur de l'OMS Arbovirus et Fièvres Hémorragiques virales - Stratégies antivirales (CC-OMS), NIAID under Contract No. HHSN272201800013C, NCI, NIH under Contract No. 75N91019D00024, NIH contract HHSN272201000040I/HHSN27200004/D04 and grant R24AI120942, US Department of Agriculture, Hatch Project 1021494, Cancer Research UK (FC001030), UK Medical Research Council (FC001030), Wellcome Trust (FC001030), Integrated Research Facility at Fort Detrick (IRF-Frederick), National Institutes of Health [Bethesda] (NIH)-National Institutes of Health [Bethesda] (NIH), ARS, Medical School, University of Ljubljana, École nationale vétérinaire d'Alfort (ENVA)-Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail (ANSES)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), and Virology
Subjects: Phylum, Identification, Alpharhabdovirinae, Strains, Field-collected mosquitos, [SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy, Article, MESH: Viruses, ICTV, 03 medical and health sciences, Biointeractions and Plant Health, MESH: Mononegavirales, Taxonomy of Viruses, Virology, Life Science, Humans, Crepuscuviridae, Myriaviridae, ComputingMilieux_MISCELLANEOUS, Taxonomy, 030304 developmental biology, Bunyavirales, 2. Zero hunger, 0303 health sciences, Virome, 030306 microbiology, Borne virus-infectons, Betarhabdovirinae, Rhabdovirus, General Medicine, Taxonomía de Virus, Merida virus, 3. Good health, Negarnaviricota, Aliusviridae, Triniti-virus, [SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology, Viruses, Queensland, Mononegavirales, Hantavirus
Abstract: In March 2021, following the annual International Committee on Taxonomy of Viruses (ICTV) ratification vote on newly proposed taxa, the phylum Negarnaviricota was amended and emended. The phylum was expanded by four families (Aliusviridae, Crepuscuviridae, Myriaviridae, and Natareviridae), three subfamilies (Alpharhabdovirinae, Betarhabdovirinae, and Gammarhabdovirinae), 42 genera, and 200 species. Thirty-nine species were renamed and/or moved and seven species were abolished. This article presents the updated taxonomy of Negarnaviricota as now accepted by the ICTV. Instituto de Patología Vegetal Fil: Kuhn, Jens H. National Institute of Allergy and Infectious Diseases. National Institutes of Health. Integrated Research Facility at Fort Detrick; Estados Unidos Fil: Adkins, Scott. United States Department of Agriculture. Agricultural Research Service. US Horticultural Research Laboratory; Estados Unidos Fil: Agwanda, Bernard R. National Museums of Kenya. Zoology Department; Kenia Fil: Agwanda, Bernard R. Jomo Kenyatta University of Agriculture & Technology; Kenia Fil: Kubrusli, Rim Al. Humboldt-Universität zu Berlin. Faculty of Life Sciences. Division Phytomedicine; Alemania Fil: Alkhovsky, Sergey V. D.I. Ivanovsky Institute of Virology of N.F. Gamaleya National Center on Epidemiology and Microbiology of Ministry of Health of Russian Federation; Rusia Fil: Amarasinghe, Gaya K. Washington University School of Medicine. Department of Pathology and Immunology; Estados Unidos Fil: Avšič-Županc, Tatjana. University of Ljubljana. Faculty of Medicine; Eslovenia Fil: Ayllón, María A. Universidad Politécnica de Madrid—Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria. Campus de Montegancedo. Centro de Biotecnología y Genómica de Plantas; España Fil: Ayllón, María A. Universidad Politécnica de Madrid. Escuela Técnica Superior de Ingeniería Agronómica, Alimentaria y de Biosistemas. Departamento de Biotecnología-Biología Vegetal; España Fil: Bahl, Justin. University of Georgia. Center for Ecology of Infectious Diseases, Department of Infectious Diseases, Department of Epidemiology and Biostatistics, Insitute of Bioinformatics; Estados Unidos Fil: Balkema-Buschmann, Anne. Institute of Novel and Emerging Infectious Diseases. Friedrich-Loeffler-Institut. Federal Research Institute for Animal Health; Alemania Fil: Bejerman, Nicolas Esteban. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina Fil: Bejerman, Nicolas Esteban. Consejo Nacional de Investigaciones Científicas y Técnicas. Unidad de Fitopatología y Modelización Agrícola (UFyMA); Argentina Fil: Debat, Humberto Julio. Instituto Nacional de Tecnología Agropecuaria (INTA). Instituto de Patología Vegetal; Argentina Fil: Debat, Humberto Julio. Consejo Nacional de Investigaciones Científicas y Técnicas. Unidad de Fitopatología y Modelización Agrícola (UFyMA); Argentina Fil: Zhou, Xueping. Chinese Academy of Agricultural Sciences. Institute of Plant Protection. State Key Laboratory for Biology of Plant Diseases and Insect Pests; China
Published: 2021

11. ICTV Virus Taxonomy Profile: Spiraviridae

Author: Prangishvili, David, Mochizuki, Tomohiro, Krupovic, Mart, Report Consortium, Ictv, Virologie des archées - Archaeal Virology, Institut Pasteur [Paris] (IP), Ivane Javakhishvili Tbilisi State University (TSU), Earth-Life Science Institute [Tokyo] (ELSI), Tokyo Institute of Technology [Tokyo] (TITECH), Production of this summary, the online chapter, and associated resources was funded by a grant from the Wellcome Trust (WT108418AIA)., Members of the ICTV 10th Report Consortium are Stuart G. Siddell, Andrew J. Davison, Elliot J. Lefkowitz, Sead Sabanadzovic, Peter Simmonds, Donald B. Smith, Richard J. Orton and Andrew M. Kropinski., and Institut Pasteur [Paris]
Subjects: 0301 basic medicine, Prokaryotic Viruses, Aeropyrum, viruses, ICTV Virus Taxonomy Profile, 030106 microbiology, DNA, Single-Stranded, Genome, Viral, Biology, Virus Replication, Genome, Open Reading Frames, 03 medical and health sciences, chemistry.chemical_compound, taxonomy, Virology, ICTV Report, Virus classification, Appendage, Spiraviridae, DNA Viruses, Virion, biology.organism_classification, Nucleoprotein, Nucleoproteins, 030104 developmental biology, chemistry, DNA, Viral, [SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology, Taxonomy (biology), DNA
Abstract: International audience; The family Spiraviridae includes viruses that replicate in hyperthermophilic archaea from the genus Aeropyrum. The non-enveloped, hollow, cylindrical virions are formed from a coiling fibre that consists of two intertwining halves of a single circular nucleoprotein filament. A short appendage protrudes from each end of the cylindrical virion. The genome is circular, positive-sense, single-stranded DNA of 24 893 nucleotides. This is a summary of the International Committee on Taxonomy of Viruses (ICTV) report on the family Spiraviridae, which is available at ictv.global/report/spiraviridae.
Published: 2020

12. Changes to virus taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2019)

Author: Walker, Peter J, Siddell, Stuart G, Lefkowitz, Elliot J, Mushegian, Arcady R, Dempsey, Donald M, Dutilh, Bas E, Harrach, Balázs, Harrison, Robert L, Hendrickson, R Curtis, Junglen, Sandra, Knowles, Nick J, Kropinski, Andrew M, Krupovic, Mart, Kuhn, Jens H, Nibert, Max, Rubino, Luisa, Sabanadzovic, Sead, Simmonds, Peter, Varsani, Arvind, Zerbini, Francisco Murilo, Davison, Andrew J, Theoretical Biology and Bioinformatics, Sub Bioinformatics, School of Biological Sciences [Brisbane], University of Queensland [Brisbane], School of Cellular and Molecular Medicine [Bristol] (CellModMed), University of Bristol [Bristol], University of Alabama at Birmingham [ Birmingham] (UAB), National Science Foundation [Arlington] (NSF), Centre for Molecular and Biomolecular Informatics [Nijmegen, the Netherlands] (CMBI), Radboud Institute for Molecular Life Sciences [Nijmegen, the Netherlands], Institute for Veterinary Medical Research [Budapest] (AOTI), Centre for Agricultural Research [Budapest] (ATK), Hungarian Academy of Sciences (MTA)-Hungarian Academy of Sciences (MTA), Invasive Insect Biocontrol and Behavior Laboratory [Beltsville, USA], USDA Agricultural Research Service [Beltsville, Maryland], USDA-ARS : Agricultural Research Service-USDA-ARS : Agricultural Research Service, Charité - UniversitätsMedizin = Charité - University Hospital [Berlin], Institute for Animal Health, the Pirbright Institute, University of Guelph, Département de Microbiologie - Department of Microbiology, Institut Pasteur [Paris], Integrated Research Facility at Fort Detrick (IRF-Frederick), National Institute of Allergy and Infectious Diseases [Bethesda] (NIAID-NIH), National Institutes of Health [Bethesda] (NIH)-National Institutes of Health [Bethesda] (NIH), Department of Microbiology and Immunobiology, Harvard Medical School [Boston] (HMS), Consiglio Nazionale delle Ricerche (CNR), Mississippi State University [Mississippi], University of Oxford [Oxford], Biodesign Center for Fundamental and Applied Microbiomics [ASU, Tempe], School of Life Sciences [Tempe, USA], Arizona State University [Tempe] (ASU)-Arizona State University [Tempe] (ASU), Universidade Federal de Vicosa (UFV), MRC - University of Glasgow Centre for Virus Research, This work was supported in part through Battelle Memorial Institute’s prime contract with the U.S. National Institute of Allergy and Infectious Diseases (NIAID) under Contract No. HHSN272200700016I (J.H.K.). N.J.K. is partially supported by core funding provided by the Biotechnology and Biological Sciences Research Council, UK. B.E.D. is supported by Netherlands Organization for Scientific Research (NWO) Vidi Grant 864.14.004. B.H. is partially supported by National Research, Development and Innovation Office–NKFIH, NN128309. A.J.D. is supported by the Medical Research Council (MC_UU_12014/3). S.S. acknowledges partial support from Mississippi Agricultural and Forestry Experiment Station (MAFES), Mississippi State University., Theoretical Biology and Bioinformatics, Sub Bioinformatics, The Pirbright Institute, Biotechnology and Biological Sciences Research Council (BBSRC), Institut Pasteur [Paris] (IP), National Research Council of Italy | Consiglio Nazionale delle Ricerche (CNR), University of Oxford, and Universidade Federal de Viçosa = Federal University of Viçosa (UFV)
Subjects: MESH: Viruses/genetics, MESH: Terminology as Topic, viruses, Coronacrisis-Taverne, virus, MESH: Committee Membership, 03 medical and health sciences, ICTV, Terminology as Topic, Virology, Tumours of the digestive tract Radboud Institute for Molecular Life Sciences [Radboudumc 14], 030304 developmental biology, Taxonomy, MESH: Virology/organization & administration, 0303 health sciences, 030306 microbiology, MESH: Virology/standards, General Medicine, 3. Good health, MESH: Viruses/classification, Viruses, [SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology, Committee Membership, RNA, Viral, MESH: Viruses/isolation & purification, MESH: RNA, Viral/genetics
Abstract: Contains fulltext : 208598.pdf (Publisher’s version ) (Closed access) This article reports the changes to virus taxonomy approved and ratified by the International Committee on Taxonomy of Viruses (ICTV) in February 2019. Of note, in addition to seven new virus families, the ICTV has approved, by an absolute majority, the creation of the realm Riboviria, a likely monophyletic group encompassing all viruses with positive-strand, negative-strand and double-strand genomic RNA that use cognate RNA-directed RNA polymerases for replication.
Published: 2019

13. A 2021 taxonomy update for the family Smacoviridae.

Author: Krupovic, Mart and Varsani, Arvind
Subjects: *SINGLE-stranded DNA, *CIRCULAR DNA, *TAXONOMY
Abstract: The family Smacoviridae (order Cremevirales, class Arfiviricetes, phylum Cressdnaviricota) is comprised of viruses with small circular single-stranded DNA genomes of ~2.3-3 kb in length that have primarily been identified in fecal sample of various animals. Smacovirus genomes carry two genes in ambisense orientation encoding a capsid protein and a rolling-circle replication initiation protein, respectively. We have revised the taxonomy of the family by assigning 138 new genomic sequences deposited in GenBank to already established taxa as well as 41 new species and six new genera. Furthermore, we have adopted binomial species nomenclature, conforming to the "Genus + freeform epithet" format for all 84 species from 12 genera. The updated Smacoviridae taxonomy presented in this article has been ratified by the International Committee on Taxonomy of Viruses (ICTV). [ABSTRACT FROM AUTHOR]
Published: 2021
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14. Family Genomoviridae: 2021 taxonomy update.

Author: Varsani, Arvind and Krupovic, Mart
Subjects: *SINGLE-stranded DNA, *CIRCULAR DNA, *TAXONOMY, *CIRCLE, *DNA replication
Abstract: The family Genomoviridae (phylum Cressdnaviricota, class Repensiviricetes, order Geplafuvirales) includes viruses with circular single-stranded DNA genomes encoding two proteins, the capsid protein and the rolling-circle replication initiation protein. The genomes of the vast majority of members in this family have been sequenced directly from diverse environmental or animal- and plant-associated samples, but two genomoviruses have been identified infecting fungi. Since the last taxonomic update of the Genomoviridae, a number of new members of this family have been sequenced. Here, we report on the most recent taxonomic update, including the creation of one new genus, Gemytripvirus, and classification of ~420 new genomoviruses into 164 new species. We also announce the adoption of the "Genus + freeform epithet" binomial system for the naming of all 236 officially recognized species in the family Genomoviridae. The updated taxonomy presented in this article has been accepted by the International Committee on Taxonomy of Viruses (ICTV). [ABSTRACT FROM AUTHOR]
Published: 2021
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15. Adnaviria: a New Realm for Archaeal Filamentous Viruses with Linear A-Form Double-Stranded DNA Genomes.

Author: Krupovic, Mart, Kuhn, Jens H., Fengbin Wang, Baquero, Diana P., Dolja, Valerian V., Egelman, Edward H., Prangishvili, David, and Koonin, Eugene V.
Subjects: *DNA, *VIRUSES, *GENOMES, *TAXONOMY, *DOUBLE-stranded RNA
Abstract: The International Committee on Taxonomy of Viruses (ICTV) has recently adopted a comprehensive, hierarchical system of virus taxa. The highest ranks in this hierarchy are realms, each of which is considered monophyletic but apparently originated independently of other realms. Here, we announce the creation of a new realm, Adnaviria, which unifies archaeal filamentous viruses with linear A-form double-stranded DNA genomes and characteristic major capsid proteins unrelated to those encoded by other known viruses. [ABSTRACT FROM AUTHOR]
Published: 2021
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16. ICTV Virus Taxonomy Profile: Globuloviridae

Author: Prangishvili, David, Krupovic, Mart, Report Consortium, Ictv, Biologie Moléculaire du Gène chez les Extrêmophiles (BMGE), Institut Pasteur [Paris] (IP), Production of this summary, the online chapter, and associated resources was funded by a grant from the Wellcome Trust (WT108418AIA)., and Institut Pasteur [Paris]
Subjects: 0301 basic medicine, Globuloviridae, viruses, [SDV]Life Sciences [q-bio], Genome, 03 medical and health sciences, Viral envelope, Virology, Host chromosome, ICTV Report, Virus classification, Taxonomy, Thermoproteus, biology, Pyrobaculum, DNA Viruses, Virion, DNA, biology.organism_classification, 030112 virology, 3. Good health, 030104 developmental biology, DNA, Viral, Taxonomy (biology), Archaea
Abstract: International audience; The family Globuloviridae comprises enveloped viruses with linear, double-stranded DNA genomes of about 21-28 kbp. The virions are spherical with a diameter of 70-100 nm. No information is available about genome replication. Globuloviruses infect hyperthermophilic archaea belonging to the genera Pyrobaculum and Thermoproteus, which thrive in extreme geothermal environments. Infection does not cause lysis of host cells and is noncytocidal. The viral genome does not integrate into the host chromosome. This is a summary of the International Committee on Taxonomy of Viruses (ICTV) Report on the taxonomy of the Globuloviridae, which is available at www.ictv.global/report/globuloviridae.
Published: 2018

17. ICTV Virus Taxonomy Profile: Bicaudaviridae

Author: Prangishvili, David, Krupovic, Mart, Report Consortium, Ictv, Biologie Moléculaire du Gène chez les Extrêmophiles (BMGE), Institut Pasteur [Paris], Production of this summary, the online chapter, and associated resources was funded by a grant from the Wellcome Trust (WT108418AIA)., Members of the ICTV Report Consortium are Elliot J. Lefkowitz, Andrew J. Davison, Stuart G. Siddell, Peter Simmonds, Sead Sabanadzovic, Donald B. Smith, Richard J. Orton and Andrew M. Kropinski., and Institut Pasteur [Paris] (IP)
Subjects: 0301 basic medicine, Bicaudaviridae, viruses, [SDV]Life Sciences [q-bio], 030106 microbiology, Genome, Viral, Virus Replication, Genome, Virus, 03 medical and health sciences, taxonomy, Virology, Lysogenic cycle, [SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN], ICTV Report, Virus classification, Phylogeny, Acidianus two-tailed virus, biology, DNA Viruses, biology.organism_classification, Archaea, 030104 developmental biology, Lytic cycle, [SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology, Taxonomy (biology), Acidianus
Abstract: International audience; The family Bicaudaviridae includes viruses that infect hyperthermophilic archaea in the genus Acidianus. The circular double-stranded DNA genome of Acidianus two-tailed virus consists of 62 730 bp, and replication can be either lytic or lysogenic. Virions undergo unique extracellular morphogenesis, being released from host cells as spindle-shaped particles that subsequently develop long tails, one at each of the two pointed ends. The spindle-shaped morphology represents a group of archaea-specific virion morphotypes. This is a summary of the International Committee on Taxonomy of Viruses (ICTV) Report on the taxonomy of the Bicaudaviridae which is available at www.ictv.global/report/bicaudaviridae.
Published: 2018

18. ICTV Virus Taxonomy Profile: Plasmaviridae

Author: Krupovic, Mart, Report Consortium, Ictv, Biologie Moléculaire du Gène chez les Extrêmophiles (BMGE), Institut Pasteur [Paris], Production of this summary, the online chapter and associated resources was funded by a grant from the Wellcome Trust (WT108418AIA)., Members of the ICTV Report Consortium are Elliot J. Lefkowitz, Andrew J. Davison, Stuart G. Siddell, Peter Simmonds, Sead Sabanadzovic, Donald B. Smith, Richard J. Orton and Andrew M. Kropinski., and Institut Pasteur [Paris] (IP)
Subjects: 0301 basic medicine, viruses, [SDV]Life Sciences [q-bio], Genome, Viral, Virus Replication, [SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy, Virus, Bacteriophage, 03 medical and health sciences, taxonomy, Plasmaviridae, Virology, ICTV Report, Bacteriophages, Phylogeny, Virus classification, Prophage, Tenericutes, biology, DNA Viruses, Virion, biology.organism_classification, 030112 virology, 3. Good health, Acholeplasma virus L2, Acholeplasma, 030104 developmental biology, [SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology, bacteria, lipids (amino acids, peptides, and proteins), Bacterial virus
Abstract: International audience; The family Plasmaviridae includes bacterial viruses with slightly pleomorphic, enveloped virions with a diameter of 50-125 nm. Virions contain infectious, circular, supercoiled dsDNA molecule(s) of approximately 12 kbp. Plasmaviruses infect Acholeplasma species, wall-less bacteria of the class Mollicutes, and are released by budding through the cell membrane without causing host cell lysis. Although the temperate bacteriophage Acholeplasma virus L2 of Acholeplasma laidlawii is currently the only classified plasmavirus, related prophages reside in the genomes of different Acholeplasma species, where they are integrated into tRNA genes. This is a summary of the International Committee on Taxonomy of Viruses (ICTV) Report on the taxonomy of the Plasmaviridae, which is available at www.ictv.global/report/plasmaviridae.
Published: 2018

19. Taxonomy of prokaryotic viruses: 2017 update from the ICTV Bacterial and Archaeal Viruses Subcommittee

Author: Adriaenssens, Evelien M, Wittmann, Johannes, Kuhn, Jens H, Turner, Dann, Sullivan, Matthew B., Dutilh, Bas E, Jang, Ho Bin, van Zyl, Leonardo J, Klumpp, Jochen, Lobocka, Malgorzata, Moreno Switt, Andrea I, Rumnieks, Janis, Edwards, Robert A, Uchiyama, Jumpei, Alfenas-Zerbini, Poliane, Petty, Nicola K, Kropinski, Andrew M, Barylski, Jakub, Gillis, Annika, Clokie, Martha R C, Prangishvili, David, Lavigne, Rob, Aziz, Ramy Karam, Duffy, Siobain, Krupovic, Mart, Poranen, Minna M., Knezevic, Petar, Enault, Francois, Tong, Yigang, Oksanen, Hanna M., Rodney Brister, J, Sub Bioinformatics, Theoretical Biology and Bioinformatics, University of Liverpool, Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH / Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures (DSMZ), National Institute of Allergy and Infectious Diseases [Bethesda] (NIAID-NIH), National Institutes of Health [Bethesda] (NIH), University of the West of England [Bristol] (UWE Bristol), Ohio State University [Columbus] (OSU), Utrecht University [Utrecht], Radboud University Medical Center [Nijmegen], University of the Western Cape, Eidgenössische Technische Hochschule - Swiss Federal Institute of Technology [Zürich] (ETH Zürich), Polish Academy of Sciences (PAN), Universidad Andrés Bello - UNAB (CHILE), Latvian Biomedical Research and Study Centre [Rīga], San Diego State University (SDSU), Azabu University, Universidade Federal de Vicosa (UFV), iThree Institute, University of Technology Sydney (UTS), University of Guelph, Adam Mickiewicz University in Poznań (UAM), Université Catholique de Louvain = Catholic University of Louvain (UCL), University of Leicester, Biologie Moléculaire du Gène chez les Extrêmophiles (BMGE), Institut Pasteur [Paris], Catholic University of Leuven - Katholieke Universiteit Leuven (KU Leuven), Cairo University, University of Warwick [Coventry], University of Helsinki, University of Novi Sad, Laboratoire Microorganismes : Génome et Environnement (LMGE), Centre National de la Recherche Scientifique (CNRS)-Université Clermont Auvergne [2017-2020] (UCA [2017-2020]), Beijing Institute of Microbiology and Epidemiology, This work was funded in part through Battelle Memorial Institute’s prime contract with the US National Institute of Allergy and Infectious Diseases (NIAID) under Contract No. HHSN272200700016I (J.H.K.). B.E.D. was supported by the Netherlands Organization for Scientific Research (NWO), Vidi Grant 864.14.004. R.A.E was supported by grant MCB-1330800 from the National Science Foundation. J.R.B. was supported by the Intramural Research Program of the National Institutes of Health, National Library of Medicine. R.L. is a member of the phagebiotics research community, supported by FWO Vlaanderen. M.M.P. was supported by the Academy of Finland (272507). A.G. was supported by the National Fund for Scientific Research (FNRS). H.M.O. was supported by University of Helsinki funding for Instruct-F1 research infrastructure., The committee would like to thank Dr. Graham Hatfull (University of Pittsburgh) for permitting us to use Actinobacteriophage Database electron micrographs in 2017’s taxonomy proposals. The authors thank Laura Bollinger (National Institutes of Health/National Institute of Allergy and Infectious Diseases, Integrated Research Facility at Fort Detrick, Frederick, MD, USA) for editing this paper., University of the Western Cape (UWC), Universidad Andrés Bello [Santiago] (UNAB), Universidade Federal de Viçosa = Federal University of Viçosa (UFV), Institut Pasteur [Paris] (IP), Helsingin yliopisto = Helsingfors universitet = University of Helsinki, Université Clermont Auvergne [2017-2020] (UCA [2017-2020])-Centre National de la Recherche Scientifique (CNRS), UCL - SST/ELI/ELIM - Applied Microbiology, Sub Bioinformatics, and Theoretical Biology and Bioinformatics
Subjects: 0301 basic medicine, Archaeal Viruses, viruses, [SDV]Life Sciences [q-bio], 030106 microbiology, education, Coronacrisis-Taverne, Zoology, Computational biology, Biology, [SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy, 03 medical and health sciences, Phylogenetics, Virology, MESH: Archaeal Viruses, Tumours of the digestive tract Radboud Institute for Molecular Life Sciences [Radboudumc 14], Bacteriophages, MESH: Bacteriophages, Virus classification, Taxonomy, General Medicine, 030104 developmental biology, [SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology, ICTV bacterial, Classification methods, Taxonomy (biology), Bacterial virus
Abstract: International audience; The prokaryotic virus community is represented at the International Committee on Taxonomy of Viruses (ICTV) by the Bacterial and Archaeal Viruses Subcommittee. Since our last report [5], the committee composition has changed, and a large number of taxonomic proposals (TaxoProps) were submitted to the ICTV Executive Committee (EC) for approval.
Published: 2018

20. Virus taxonomy in the age of metagenomics

Author: Simmonds, Peter, Adams, Mike J., Benko, Mária, Breitbart, Mya, Brister, J. Rodney, Zerbini, F. Murilo, Carstens, Eric B., Davison, Andrew J., Delwart, Eric, Gorbalenya, Alexander E., Harrach, Balázs, Hull, Roger, King, Andrew M.Q., Koonin, Eugene V., Krupovic, Mart, Kuhn, Jens H., and Lefkowitz, Elliot J.
Subjects: Characterization, Virus, Taxonomy
Abstract: The number and diversity of viral sequences that are identified in metagenomic data far exceeds that of experimentally characterized virus isolates. In a recent workshop, a panel of experts discussed the proposal that, with appropriate quality control, viruses that are known only from metagenomic data can, and should be, incorporated into the official classification scheme of the International Committee on Taxonomy of Viruses (ICTV). Although a taxonomy that is based on metagenomic sequence data alone represents a substantial departure from the traditional reliance on phenotypic properties, the development of a robust framework for sequence-based virus taxonomy is indispensable for the comprehensive characterization of the global virome. In this Consensus Statement article, we consider the rationale for why metagenomic sequence data should, and how it can, be incorporated into the ICTV taxonomy, and present proposals that have been endorsed by the Executive Committee of the ICTV.
Published: 2017

21. ICTV Virus Taxonomy Profile: Ampullaviridae

Author: Prangishvili, David, Krupovic, Mart, Report Consortium, Ictv, Biologie Moléculaire du Gène chez les Extrêmophiles (BMGE), Institut Pasteur [Paris], Production of this summary, the online chapter, and associated resources was funded by a grant from the Wellcome Trust (WT108418AIA)., Members of the ICTV Report Consortium are Elliot J. Lefkowitz, Andrew J. Davison, Stuart G. Siddell, Peter Simmonds, Sead Sabanadzovic, Donald B. Smith, Richard J. Orton and Andrew M. Kropinski., and Institut Pasteur [Paris] (IP)
Subjects: 0301 basic medicine, Prokaryotic Viruses, [SDV]Life Sciences [q-bio], viruses, 030106 microbiology, Genome, Viral, Acidianus bottle-shaped virus, Virus Replication, [SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy, Genome, 03 medical and health sciences, Virology, ICTV Report, RNA Viruses, Bacteriophages, Phylogeny, Polymerase, Virus classification, Taxonomy, [SDV.GEN]Life Sciences [q-bio]/Genetics, biology, Ampullaviridae, Virion, biology.organism_classification, Archaea, ICTV Virus Taxonomy Profiles, Nucleoprotein, 030104 developmental biology, [SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology, biology.protein, Taxonomy (biology), Bacteria
Abstract: International audience; The family Ampullaviridae includes viruses with linear dsDNA genomes that replicate in hyperthermophilic archaea from the genus Acidianus. The virions have a unique champagne bottle-shaped morphology and consist of a nucleoprotein filament condensed into a cone-shaped core, which is encased by an envelope, with the base of the 'bottle' decorated with a ring of 20 filaments. Genome replication is presumably carried out by the virus-encoded protein-primed family B DNA polymerase. The bottle-shaped morphology is unprecedented among viruses of bacteria and eukaryotes and represents a group of archaea-specific virion morphotypes. This is a summary of the International Committee on Taxonomy of Viruses (ICTV) Report on the taxonomy of the Ampullaviridae, which is available at www.ictv.global/report/ampullaviridae.
Published: 2018

22. Strengthening the Interaction of the Virology Community with the International Committee on Taxonomy of Viruses (ICTV) by Linking Virus Names and Their Abbreviations to Virus Species.

Author: Calisher, Charles H, Briese, Thomas, Brister, J Rodney, Charrel, Rémi N, Dürrwald, Ralf, Ebihara, Hideki, Fulhorst, Charles F, Gāo, George Fú, Groschup, Martin H, Haddow, Andrew D, Hyndman, Timothy H, Junglen, Sandra, Klempa, Boris, Klingström, Jonas, Kropinski, Andrew M, Krupovic, Mart, LaBeaud, A Desiree, Maes, Piet, Nowotny, Norbert, and Nunes, Márcio Roberto Teixeira
Subjects: VIROLOGY, VIRUSES, TAXONOMY, SPECIES
Abstract: The International Committee on Taxonomy of Viruses (ICTV) is tasked with classifying viruses into taxa (phyla to species) and devising taxon names. Virus names and virus name abbreviations are currently not within the ICTV's official remit and are not regulated by an official entity. Many scientists, medical/veterinary professionals, and regulatory agencies do not address evolutionary questions nor are they concerned with the hierarchical organization of the viral world, and therefore, have limited use for ICTV-devised taxa. Instead, these professionals look to the ICTV as an expert point source that provides the most current taxonomic affiliations of viruses of interests to facilitate document writing. These needs are currently unmet as an ICTV-supported, easily searchable database that includes all published virus names and abbreviations linked to their taxa is not available. In addition, in stark contrast to other biological taxonomic frameworks, virus taxonomy currently permits individual species to have several members. Consequently, confusion emerges among those who are not aware of the difference between taxa and viruses, and because certain well-known viruses cannot be located in ICTV publications or be linked to their species. In addition, the number of duplicate names and abbreviations has increased dramatically in the literature. To solve this conundrum, the ICTV could mandate listing all viruses of established species and all reported unclassified viruses in forthcoming online ICTV Reports and create a searchable webpage using this information. The International Union of Microbiology Societies could also consider changing the mandate of the ICTV to include the nomenclature of all viruses in addition to taxon considerations. With such a mandate expansion, official virus names and virus name abbreviations could be catalogued and virus nomenclature could be standardized. As a result, the ICTV would become an even more useful resource for all stakeholders in virology. [ABSTRACT FROM AUTHOR]
Published: 2019
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23. Additional changes to taxonomy ratified in a special vote by the International Committee on Taxonomy of Viruses (October 2018).

Author: Siddell, Stuart G., Walker, Peter J., Lefkowitz, Elliot J., Mushegian, Arcady R., Adams, Michael J., Dutilh, Bas E., Gorbalenya, Alexander E., Harrach, Balázs, Harrison, Robert L., Junglen, Sandra, Knowles, Nick J., Kropinski, Andrew M., Krupovic, Mart, Kuhn, Jens H., Nibert, Max, Rubino, Luisa, Sabanadzovic, Sead, Sanfaçon, Hélène, Simmonds, Peter, and Varsani, Arvind
Subjects: TAXONOMY, ANAPLASTIC lymphoma kinase, MEDICAL care, VIRUS diversity, INFORMATION & communication technologies
Abstract: This article reports the changes to virus taxonomy approved and ratified by the International Committee on Taxonomy of Viruses (ICTV) in October 2018. Of note, the ICTV has approved, by an absolute majority, the creation of additional taxonomical ranks above those recognized previously. A total of 15 ranks (realm, subrealm, kingdom, subkingdom, phylum, subphylum, class, subclass, order, suborder, family, subfamily, genus, subgenus, and species) are now available to encompass the entire spectrum of virus diversity. Classification at ranks above genus is not obligatory but can be used by the authors of new taxonomic proposals when scientific justification is provided. [ABSTRACT FROM AUTHOR]
Published: 2019
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24. Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2018).

Author: King, Andrew M. Q., Lefkowitz, Elliot J., Mushegian, Arcady R., Adams, Michael J., Dutilh, Bas E., Gorbalenya, Alexander E., Harrach, Balázs, Harrison, Robert L., Junglen, Sandra, Knowles, Nick J., Kropinski, Andrew M., Krupovic, Mart, Kuhn, Jens H., Nibert, Max L., Rubino, Luisa, Sabanadzovic, Sead, Sanfaçon, Hélène, Siddell, Stuart G., Simmonds, Peter, and Varsani, Arvind
Subjects: CLASSIFICATION of viruses, NAMES of viruses, TAXONOMY, VIRUSES, VIROLOGY, GOVERNMENT policy
Abstract: This article lists the changes to virus taxonomy approved and ratified by the International Committee on Taxonomy of Viruses in February 2018. A total of 451 species, 69 genera, 11 subfamilies, 9 families and one new order were added to the taxonomy. The current totals at each taxonomic level now stand at 9 orders, 131 families, 46 subfamilies, 803 genera and 4853 species. A change was made to the International Code of Virus Classification and Nomenclature to allow the use of the names of people in taxon names under appropriate circumstances. An updated Master Species List incorporating the approved changes was released in March 2018 (https://talk.ictvonline.org/taxonomy/). [ABSTRACT FROM AUTHOR]
Published: 2018
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25. Taxonomy of prokaryotic viruses: update from the ICTV bacterial and archaeal viruses subcommittee.

Author: Krupovic, Mart, Dutilh, Bas, Adriaenssens, Evelien, Wittmann, Johannes, Vogensen, Finn, Sullivan, Mathew, Rumnieks, Janis, Prangishvili, David, Lavigne, Rob, Kropinski, Andrew, Klumpp, Jochen, Gillis, Annika, Enault, Francois, Edwards, Rob, Duffy, Siobain, Clokie, Martha, Barylski, Jakub, Ackermann, Hans-Wolfgang, and Kuhn, Jens
Subjects: *PROKARYOTES, *TAXONOMY, *CAUDOVIRALES, *BIOLOGICAL evolution, *BACTERIOPHAGE lambda
Published: 2016
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26. 2020 taxonomic update for phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales

Author: Amadou A. Sall, Christopher F. Basler, Gary P. Kobinger, Amy J. Lambert, Rodrigo Jardim, John V. da Graça, Yong-Zhen Zhang, Víctor Romanowski, Massimo Turina, John W. McCauley, Lin-Fa Wang, Paul A. Rota, Olga Dolnik, Juan Carlos de la Torre, Gabriele Neumann, Natalie J. Thornburg, Tomohide Natsuaki, Jin Won Song, Kartik Chandran, Carol D. Blair, Michael A. Drebot, Guohui Zhou, Rémi N. Charrel, Heather L. Wells, Ralf G. Dietzgen, Bernadett Pályi, Arnfinn Lodden Økland, Ian Crozier, Gael Kurath, Gilda B. Jonson, Robert R. Martin, Xuejie Yu, Anthony R. Fooks, Renato O. Resende, Ali Mirazimi, Bernadette G. van den Hoogen, Scott Adkins, Colin R. Parrish, Alexander Bukreyev, Anthony Griffiths, Timothy H. Hyndman, Peter Simmonds, Rachel Breyta, Zhìqiáng Wú, Ralf Dürrwald, Jorlan Fernandes, Biao Chen, Udo Hetzel, Alexandro Guterres, Jessica R. Spengler, Michael J. Buchmeier, Rayapati A. Naidu, Janusz T. Paweska, Keizō Tomonaga, Kamil Sarpkaya, Ivan V. Kuzmin, Jens H. Kuhn, Piet Maes, Marco Marklewitz, Masayuki Horie, Arvind Varsani, Shin-Yi Lee Marzano, Ursula J. Buchholz, Jean-Paul Gonzalez, Angelantonio Minafra, Daniela Alioto, Simon J. Anthony, Florian Pfaff, Brian H. Bird, Peter J. Walker, Robert A. Lamb, Noël Tordo, Rainer G. Ulrich, Sergio H. Marshall, Eric M. Leroy, Ayato Takada, Kirsten Spann, Xavier de Lamballerie, John M. Dye, Inmaculada Casas, Manuela Sironi, J. Christopher S. Clegg, Paul Brown, Dennis Rubbenstroth, Yan Liu, Márcio Roberto Teixeira Nunes, Tatjana Avšič-Županc, Martin Verbeek, Andrew J. Easton, Beatriz Navarro, Hideki Ebihara, Benhur Lee, Pierre Formenty, Qi Jin, Hideki Kondō, Eric Bergeron, Sébastien Massart, Daniel R. Perez, S. V. Alkhovsky, Charles H. Calisher, Anna Papa, Xīnglóu Yáng, José A. Navarro, Xifeng Wang, Taiyun Wei, Kim R. Blasdell, Lucie Dufkova, Renata Carvalho de Oliveira, Elba Regina Sampaio de Lemos, Nikos Vasilakis, Pedro Luis Ramos-González, Tong Zhang, Holly R. Hughes, Leonie Forth, Serpil Karadağ, F. Murilo Zerbini, Xueping Zhou, María Laura García, Tomáš Bartonička, Sandra Junglen, Aziz ul Rahman, Petra Straková, Karen E. Keller, William G. Dundon, Jiří Salát, Dexin Li, Jussi Hepojoki, Maria S. Salvato, Hui Wang, Justin Bahl, Bernd Hoffmann, Alberto M. R. Dávila, Jonathan S. Towner, Wénwén Liú, Mifang Liang, Yuri I. Wolf, Gaya K. Amarasinghe, Jianwei Wang, Alex Pauvolid-Corrêa, Anna Maria Vaira, Roy A. Hall, William Marciel de Souza, Thomas Briese, Felicity J. Burt, Valerian V. Dolja, Boris Klempa, Satu Hepojoki, Mengji Cao, Selma Gago-Zachert, Il-Ryong Choi, Rik L. de Swart, Jan Felix Drexler, Gabriel Robles Luna, Igor S. Lukashevich, Maria Minutolo, Amara Jambai, Nihal Buzkan, Steven B. Bradfute, Are Nylund, Ioannis E. Tzanetakis, Xiǎohóng Shí, Stephan Günther, Aura R. Garrison, Takahide Sasaya, Mart Krupovic, Victoria Wahl, Seiji Hongo, Matthew J. Ballinger, María A. Ayllón, Jonas Klingström, David M. Stone, Sead Sabanadzovic, Tracey Goldstein, George Fú Gāo, Aiah Gbakima, Norbert Nowotny, Vicente Pallás, Carina Andrea Reyes, W. Paul Duprex, Roger Hewson, Muhammad Zubair Shabbir, Sophie J. Smither, John V. Williams, Hans Peter Mühlbach, John Chamberlain, Yukio Shirako, Elke Mühlberger, Lies Laenen, Martin Beer, Jiànróng Lǐ, Giovanni P. Martelli, Gustavo Palacios, Sina Bavari, Natalya Yutin, Elena Dal Bó, Michele Digiaro, Jonathan A. Runstadler, John Hammond, Martin Schwemmle, Robert B. Tesh, Dirk Höper, Martin H. Groschup, Francesco Di Serio, Teemu Smura, Sheli R. Radoshitzky, Juliana Freitas-Astúa, Susan Payne, Dennis A. Bente, Anne Balkema-Buschmann, Adolfo García-Sastre, Eugene V. Koonin, Nicholas Di Paola, Bertus K. Rima, Mark D. Stenglein, Mohamed Hassan, Michela Chiumenti, Koray Ergünay, Patrick L. Di Bello, Ron A. M. Fouchier, Anna E. Whitfield, Toufic Elbeaino, Xin Yang, Nicole Mielke-Ehret, Jana Širmarová, Daniel Ruzek, Dàohóng Jiāng, Stanley L. Langevin, Sergey V. Netesov, Zhengli Shi, National Institute of Allergy and Infectious Diseases [Bethesda] (NIAID-NIH), National Institutes of Health [Bethesda] (NIH), Laboratoire de Ploufragan-Plouzané-Niort [ANSES], Agence nationale de sécurité sanitaire de l'alimentation, de l'environnement et du travail (ANSES), Unité des Virus Emergents (UVE), Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut National de la Santé et de la Recherche Médicale (INSERM), Virologie des archées - Archaeal Virology, Institut Pasteur [Paris], Maladies infectieuses et vecteurs : écologie, génétique, évolution et contrôle (MIVEGEC), Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche pour le Développement (IRD [France-Sud]), Institut Pasteur de Dakar, Réseau International des Instituts Pasteur (RIIP), Centre collaborateur de l'OMS Arbovirus et Fièvres Hémorragiques virales - Stratégies antivirales (CC-OMS), Institut Pasteur de Guinée, Les Mandinaux, 16450 Le Grand Madieu, This work was supported in part through Laulima Government Solutions, LLC prime contract with the US National Institute of Allergy and Infectious Diseases (NIAID) under Contract No. HHSN272201800013C. J.H.K. performed this work as an employee of Tunnell Government Services (TGS), a subcontractor of Laulima Government Solutions, LLC under Contract No. HHSN272201800013C. This project has been funded in whole or in part with federal funds from the National Cancer Institute (NCI), National Institutes of Health (NIH), under Contract No. 75N91019D00024, Task Order No. 75N91019F00130 to I.C., who was supported by the Clinical Monitoring Research Program Directorate, Frederick National Lab for Cancer Research, sponsored by NCI. This work was also funded in part by Contract No. HSHQDC-15-C-00064 awarded by the US Department of Homeland Security (DHS) Science and Technology Directorate (S&T) for the management and operation of The National Biodefense Analysis and Countermeasures Center (NBACC), a federally funded research and development center operated by the Battelle National Biodefense Institute (V.W.), and NIH contract HHSN272201000040I/HHSN27200004/D04 and grant R24AI120942 (N.V., R.B.T.). S.S. acknowledges partial support from the Special Research Initiative of Mississippi Agricultural and Forestry Experiment Station (MAFES), Mississippi State University, and the National Institute of Food and Agriculture, US Department of Agriculture, Hatch Project 1021494., We thank W. Ian Lipkin and Rafal Tokarz (Columbia University Irving Medical Center, New York, New York, USA) for providing/approving new names for 'blacklegged tick phleboviruses 1 and 3' and Edward Holmes (University of Sydney, Australia) for providing/approving a new name for 'Norway phlebovirus'. Many authors are current members of 2017-2020 International Committee on Taxonomy of Viruses (ICTV) Study Groups: Arenaviridae (Jens H. Kuhn, Michael J. Buchmeier, Rémi N. Charrel, J. Christopher S. Clegg, Juan Carlos de la Torre, Jean-Paul J. Gonzalez, Stephan Günther, Mark D. Stenglein, Jussi Hepojoki, Manuela Sironi, Igor S. Lukashevich, Sheli R. Radoshitzky, Víctor Romanowski, Maria S. Salvato), Artoviridae (Jens H. Kuhn, Ralf G. Dietzgen, Dàohóng Jiāng, Nikos Vasilakis), Aspiviridae (John V. da Graça, Elena Dal Bó, Selma Gago-Zachert, María Laura García, John Hammond, Tomohide Natsuaki, José A. Navarro, Vicente Pallás, Carina A. Reyes, Gabriel Robles Luna, Takahide Sasaya, Ioannis Tzanetakis, Anna Maria Vaira, Martin Verbeek), Bornaviridae (Jens H. Kuhn, Thomas Briese, Ralf Dürrwald, Masayuki Horie, Timothy H. Hyndman, Norbert Nowotny, Susan Payne, Dennis Rubbenstroth, Mark D. Stenglein, Keizō Tomonaga), Bunyavirales (Jens H. Kuhn, Scott Adkins, Juan Carlos de la Torre, Sandra Junglen, Amy J. Lambert, Piet Maes, Marco Marklewitz, Gustavo Palacios, Takahide Sasaya, Yong-Zhen Zhang), Filoviridae (Jens H. Kuhn, Gaya K. Amarasinghe, Christopher Basler, Sina Bavari, Alexander Bukreyev, Kartik Chandran, Ian Crozier, Olga Dolnik, John M. Dye, Pierre B. H. Formenty, Anthony Griffiths, Roger Hewson, Gary Kobinger, Eric M. Leroy, Elke Mühlberger, Sergey V. Netesov, Gustavo Palacios, Bernadett Pályi, Janusz T. Pawęska, Sophie Smither, Ayato Takada, Jonathan S. Towner, Victoria Wahl), Fimoviridae (Michele Digiaro, Toufic Elbeaino, Giovanni P. Martelli, Nicole Mielke-Ehret, Hans-Peter Mühlbach), Hantaviridae (Steven Bradfute, Charles H. Calisher, Boris Klempa, Jonas Klingström, Lies Laenen, Piet Maes, Jin-Won Song, Yong-Zhen Zhang), Jingchuvirales (Nicholas Di Paola), Monjiviricetes (Jens H. Kuhn, Ralf G. Dietzgen, W. Paul Duprex, Dàohóng Jiāng, Piet Maes, Janusz T. Pawęska, Bertus K. Rima, Dennis Rubbenstroth, Peter J. Walker, Yong-Zhen Zhang), Mymonaviridae (María A. Ayllón, Dàohóng Jiāng, Shin-Yi L. Marzano), Nairoviridae (Jens H. Kuhn, Sergey V. Alkhovsky, Tatjana Avšič-Županc, Dennis A. Bente, Éric Bergeron, Felicity Burt, Nicholas Di Paola, Koray Ergünay, Aura R. Garrison, Roger Hewson, Ali Mirazimi, Gustavo Palacios, Anna Papa, Amadou Alpha Sall, Jessica R. Spengler), Negarnaviricota (Jens H. Kuhn, Eugene V. Koonin, Mart Krupovic, Yuri I. Wolf), Nyamiviridae (Jens H. Kuhn, Ralf G. Dietzgen, Dàohóng Jiāng, Nikos Vasilakis), Orthomyxoviridae (Justin Bahl, Inmaculada Casas, Adolfo García-Sastre, Seiji Hongo, Sergio H. Marshall, John W. McCauley, Gabriele Neumann, Colin R. Parrish, Daniel R. Pérez, Jonathan A. Runstadler, Martin Schwemmle), Paramyxoviridae (Anne Balkema-Buschmann, William G. Dundon, W. Paul Duprex, Andrew J. Easton, Ron Fouchier, Gael Kurath, Benhur Lee, Bertus K. Rima, Paul Rota, Lin-Fa Wang, Robobert A. Lamb), Peribunyaviridae (Scott Adkins, Sergey V. Alkhovsky, Martin Beer, Carol D. Blair, Charles H. Calisher, Michael A. Drebot, Holly R. Hughes, Amy J. Lambert, William Marciel de Souza, Marco Marklewitz, Márcio R. T. Nunes, Xiǎohóng Shí), Phasmaviridae (Matthew J. Ballinger, Roy A. Hall, Sandra Junglen, Stanley L. Langevin, Alex Pauvolid-Corrêa), Phenuiviridae (Thomas Briese, Rémi N. Charrel, Xavier De Lamballerie, Hideki Ebihara, George Fú Gāo, Martin H. Groschup, Márcio R. T. Nunes, Gustavo Palacios, Takahide Sasaya, Jin-Won Song), Pneumoviridae (Paul A. Brown, Ursula J. Buchholz, Rik L. de Swart, Jan Felix Drexler, W. Paul Duprex, Andrew J. Easton, Jiànróng Lǐ, Kirsten Spann, Natalie J. Thornburg, Bernadette van den Hoogen, John V. Williams), Rhabdoviridae (Kim R. Blasdell, Rachel Breyta, Ralf G. Dietzgen, Anthony R. Fooks, Juliana Freitas-Astúa, Hideki Kondō, Gael Kurath, Ivan V. Kuzmin, David M. Stone, Robert B. Tesh, Noël Tordo, Nikos Vasilakis, Peter J. Walker, Anna E. Whitfield), Sunviridae (Timothy H. Hyndman, Gael Kurath), Tenuivirus (Il-Ryong Choi, Gilda B. Jonson, Takahide Sasaya, Yukio Shirako, Tàiyún Wèi, Xueping Zhou), and Tospoviridae (Scott Adkins, Amy J. Lambert, Rayapati Naidu, Renato O. Resende, Massimo Turina, Anna E. Whitfield), or are ICTV Executive Committee Members: the 2017–2020 ICTV Chair of the Fungal and Protist Viruses Subcommittee (Peter Simmonds), the 2018–2020 ICTV Proposal Secretary (Peter J. Walker), the 2017–2020 ICTV Chair of the Plant Viruses Subcommittee (F. Murilo Zerbini), the 2017–2020 ICTV Chair of the Animal dsRNA and ssRNA- Viruses Subcommittee (Jens H. Kuhn), and 2017–2020 Elected Members (Sead Sabanadzovic, Arvind Varsani). We would like to thank Anya Crane (NIH/NIAID/DCR/IRF-Frederick) for critically editing the manuscript., NIH - National Institute of Allergy and Infectious Diseases (NIAID) (Estados Unidos), NIH - National Cancer Institute (NCI) (Estados Unidos), United State Department of Homeland Security (Estados Unidos), National Biodefense Analysis and Countermeasures Center (NBACC) (Estados Unidos), Battelle National Biodefense Institute, Mississippi Agricultural and Forestry Experiment Station (MAFES) (Estados Unidos), Mississippi State University (Estados Unidos), United States Department of Agriculture. National Institute of Food and Agriculture, Institut Pasteur [Paris] (IP), Virology, H Kuhn, Jen, Adkins, Scott, Alioto, Daniela, V Alkhovsky, Sergey, K Amarasinghe, Gaya, J Anthony, Simon, Avšič-Županc, Tatjana, A Ayllón, María, Bahl, Justin, Balkema-Buschmann, Anne, J Ballinger, Matthew, Bartonička, Tomáš, Basler, Christopher, Bavari, Sina, Beer, Martin, A Bente, Denni, Bergeron, Éric, H Bird, Brian, Blair, Carol, R Blasdell, Kim, B Bradfute, Steven, Breyta, Rachel, Briese, Thoma, A Brown, Paul, J Buchholz, Ursula, J Buchmeier, Michael, Bukreyev, Alexander, Burt, Felicity, Buzkan, Nihal, H Calisher, Charle, Cao, Mengji, Casas, Inmaculada, Chamberlain, John, Chandran, Kartik, N Charrel, Rémi, Chen, Biao, Chiumenti, Michela, Choi, Il-Ryong, S Clegg, J Christopher, Crozier, Ian, V da Graça, John, Dal Bó, Elena, R Dávila, Alberto M, Carlos de la Torre, Juan, de Lamballerie, Xavier, L de Swart, Rik, L Di Bello, Patrick, Di Paola, Nichola, Di Serio, Francesco, G Dietzgen, Ralf, Digiaro, Michele, V Dolja, Valerian, Dolnik, Olga, A Drebot, Michael, Felix Drexler, Jan, Dürrwald, Ralf, Dufkova, Lucie, G Dundon, William, Paul Duprex, W, M Dye, John, J Easton, Andrew, Ebihara, Hideki, Elbeaino, Toufic, Ergünay, Koray, Fernandes, Jorlan, R Fooks, Anthony, H Formenty, Pierre B, F Forth, Leonie, M Fouchier, Ron A, Freitas-Astúa, Juliana, Gago-Zachert, Selma, Fú Gāo, George, Laura García, María, García-Sastre, Adolfo, R Garrison, Aura, Gbakima, Aiah, Goldstein, Tracey, J Gonzalez, Jean-Paul, Griffiths, Anthony, H Groschup, Martin, Günther, Stephan, Guterres, Alexandro, A Hall, Roy, Hammond, John, Hassan, Mohamed, Hepojoki, Jussi, Hepojoki, Satu, Hetzel, Udo, Hewson, Roger, Hoffmann, Bernd, Hongo, Seiji, Höper, Dirk, Horie, Masayuki, R Hughes, Holly, H Hyndman, Timothy, Jambai, Amara, Jardim, Rodrigo, Jiāng, Dàohóng, Jin, Qi, B Jonson, Gilda, Junglen, Sandra, Karadağ, Serpil, E Keller, Karen, Klempa, Bori, Klingström, Jona, Kobinger, Gary, Kondō, Hideki, V Koonin, Eugene, Krupovic, Mart, Kurath, Gael, V Kuzmin, Ivan, Laenen, Lie, A Lamb, Robert, J Lambert, Amy, L Langevin, Stanley, Lee, Benhur, S Lemos, Elba R, M Leroy, Eric, Li, Dexin, Lǐ, Jiànróng, Liang, Mifang, Liú, Wénwén, Liú, Yàn, S Lukashevich, Igor, Maes, Piet, Marciel de Souza, William, Marklewitz, Marco, H Marshall, Sergio, P Martelli, Giovanni, R Martin, Robert, L Marzano, Shin-Yi, Massart, Sébastien, W McCauley, John, Mielke-Ehret, Nicole, Minafra, Angelantonio, Minutolo, Maria, Mirazimi, Ali, Mühlbach, Hans-Peter, Mühlberger, Elke, Naidu, Rayapati, Natsuaki, Tomohide, Navarro, Beatriz, A Navarro, José, V Netesov, Sergey, Neumann, Gabriele, Nowotny, Norbert, T Nunes, Márcio R, Nylund, Are, L Økland, Arnfinn, C Oliveira, Renata, Palacios, Gustavo, Pallas, Vicente, Pályi, Bernadett, Papa, Anna, R Parrish, Colin, Pauvolid-Corrêa, Alex, T Pawęska, Janusz, Payne, Susan, R Pérez, Daniel, Pfaff, Florian, R Radoshitzky, Sheli, Rahman, Aziz-Ul, L Ramos-González, Pedro, O Resende, Renato, A Reyes, Carina, K Rima, Bertu, Romanowski, Víctor, Robles Luna, Gabriel, Rota, Paul, Rubbenstroth, Denni, A Runstadler, Jonathan, Ruzek, Daniel, Sabanadzovic, Sead, Salát, Jiří, Alpha Sall, Amadou, S Salvato, Maria, Sarpkaya, Kamil, Sasaya, Takahide, Schwemmle, Martin, Z Shabbir, Muhammad, Shí, Xiǎohóng, Shí, Zhènglì, Shirako, Yukio, Simmonds, Peter, Širmarová, Jana, Sironi, Manuela, Smither, Sophie, Smura, Teemu, Song, Jin-Won, M Spann, Kirsten, R Spengler, Jessica, D Stenglein, Mark, M Stone, David, Straková, Petra, Takada, Ayato, B Tesh, Robert, J Thornburg, Natalie, Tomonaga, Keizō, Tordo, Noël, S Towner, Jonathan, Turina, Massimo, Tzanetakis, Ioanni, G Ulrich, Rainer, Maria Vaira, Anna, van den Hoogen, Bernadette, Varsani, Arvind, Vasilakis, Niko, Verbeek, Martin, Wahl, Victoria, J Walker, Peter, Wang, Hui, Wang, Jianwei, Wang, Xifeng, Wang, Lin-Fa, Wèi, Tàiyún, Wells, Heather, E Whitfield, Anna, V Williams, John, I Wolf, Yuri, Wú, Zhìqiáng, Yang, Xin, Yáng, Xīnglóu, Yu, Xuejie, Yutin, Natalya, Murilo Zerbini, F, Zhang, Tong, Zhang, Yong-Zhen, Zhou, Guohui, and Zhou., Xueping
Subjects: Species complex, MESH: Terminology as Topic, Biología, VÍRUS DE RNA, Biology, Article, 03 medical and health sciences, Biointeractions and Plant Health, V?rus / classifica??o, MESH: Mononegavirales, Genus, Virology, Terminology as Topic, Life Science, Bunyavirales, Ciencias Exactas, Taxonomy, 030304 developmental biology, Order Mononegavirales, 0303 health sciences, 030306 microbiology, Phylum, General Medicine, 15. Life on land, Negarnaviricota, Filogenia, Taxon, Evolutionary biology, [SDV.MP.VIR]Life Sciences [q-bio]/Microbiology and Parasitology/Virology, Taxonomy (biology), Mononegavirales
Abstract: In March 2020, following the annual International Committee on Taxonomy of Viruses (ICTV) ratification vote on newly proposed taxa, the phylum Negarnaviricota was amended and emended. At the genus rank, 20 new genera were added, two were deleted, one was moved, and three were renamed. At the species rank, 160 species were added, four were deleted, ten were moved and renamed, and 30 species were renamed. This article presents the updated taxonomy of Negarnaviricota as now accepted by the ICTV., La lista completa de autores que integran el documento puede consultarse en el archivo., Facultad de Ciencias Agrarias y Forestales, Centro de Investigaciones en Fitopatología, Facultad de Ciencias Exactas, Instituto de Biotecnologia y Biologia Molecular
Published: 2020

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26 results on '"Krupovic, Mart"'

1. Differentiating between viruses and virus species by writing their names correctly

2. ICTV Virus Taxonomy Profile: Belpaoviridae 2021

3. Diversity, taxonomy, and evolution of archaeal viruses of the class Caudoviricetes

4. Bacterial Viruses Subcommittee and Archaeal Viruses Subcommittee of the ICTV: Update of taxonomy changes in 2021

5. Four principles to establish a universal virus taxonomy.

6. ICTV Virus Taxonomy Profile: Thaspiviridae 2021

7. Recent changes to virus taxonomy ratified by the International Committee on Taxonomy of Viruses (2022).

8. ICTV Virus Taxonomy Profile: Pseudoviridae

9. Changes to virus taxonomy and to the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2021)

10. 2021 Taxonomic update of phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales

11. ICTV Virus Taxonomy Profile: Spiraviridae

12. Changes to virus taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2019)

13. A 2021 taxonomy update for the family Smacoviridae.

14. Family Genomoviridae: 2021 taxonomy update.

15. Adnaviria: a New Realm for Archaeal Filamentous Viruses with Linear A-Form Double-Stranded DNA Genomes.

16. ICTV Virus Taxonomy Profile: Globuloviridae

17. ICTV Virus Taxonomy Profile: Bicaudaviridae

18. ICTV Virus Taxonomy Profile: Plasmaviridae

19. Taxonomy of prokaryotic viruses: 2017 update from the ICTV Bacterial and Archaeal Viruses Subcommittee

20. Virus taxonomy in the age of metagenomics

21. ICTV Virus Taxonomy Profile: Ampullaviridae

22. Strengthening the Interaction of the Virology Community with the International Committee on Taxonomy of Viruses (ICTV) by Linking Virus Names and Their Abbreviations to Virus Species.

23. Additional changes to taxonomy ratified in a special vote by the International Committee on Taxonomy of Viruses (October 2018).

24. Changes to taxonomy and the International Code of Virus Classification and Nomenclature ratified by the International Committee on Taxonomy of Viruses (2018).

25. Taxonomy of prokaryotic viruses: update from the ICTV bacterial and archaeal viruses subcommittee.

26. 2020 taxonomic update for phylum Negarnaviricota (Riboviria: Orthornavirae), including the large orders Bunyavirales and Mononegavirales

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26 results on '"Krupovic, Mart"'

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