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Postharvest rot, caused by Penicillium expansum, in tomatoes poses significant economic and health risks. Traditional control methods, such as the use of fungicides, raise concerns about pathogen resistance, food safety, and environmental impact. In search of sustainable alternatives, plant secondary metabolites, particularly phenolic compounds and their derivatives, have emerged as promising natural antimicrobials. Among these, feruloyl glyceride (FG), a water-soluble derivative of ferulic acid, stands out due to its antioxidant properties, antibacterial properties, and improved solubility. In this study, we provide evidence demonstrating FG is capable of inhibiting the spore germination of P. expansum and effectively reducing the incidence rate of Penicillium rot of tomatoes, without compromising quality. Electron microscopy observations combined with metabolite and transcriptomic analyses revealed that FG treatments resulted in enhanced suberin accumulation through promoting the expression of suberin synthesis related genes and, consequently, inhibited the growth and expansion of P. expansum on the fruits. This work sheds light on the mechanisms underlying FG's inhibitory effects, allowing its potential application as a natural and safe alternative to replace chemical fungicides for postharvest preservation. [ABSTRACT FROM AUTHOR]

The tomato transcription factor SlNAC1 plays an important role in abiotic stress response and is fine‐tuned at both transcriptional and posttranslational levels. The SlNAC1 gene is strongly induced by multiple abiotic stresses and the SlNAC1 protein is subjected to ubiquitin proteasome‐mediated degradation. We found here that SlNAC1 possesses two distinct transactivation domains (TADs), TAD1 and TAD2. Significantly, the instability of SlNAC1 was attributed to the acidic amino acid‐rich TAD1, in which the instability and transcriptional potential of TAD1 functionally overlapped; whereas the glutamine‐rich TAD2 was stable and accounted for the abiotic stress signalling mediated by SlNAC1. Towards the goal of enhanced tolerance to abiotic stress in tomatoes, we manipulated SlNAC1 at both gene and protein levels: we generated a stable and functional SlNAC1 mutant SlNAC1∆191‐270 by removing TAD1 and further engineered it to be stress‐controllable by fusing the corresponding cDNA with the abiotic stress‐inducible promoter ProStNAC1. Transgenic tomato plants expressing the ProStNAC1::SlNAC1∆191‐270 transgene did not display any undesired traits and exhibited enhanced tolerance to cold, drought and salt stresses. Taken together, our manipulation of the stress‐related transcription factor via conditional expression of its derived stable and functional mutant provides a successful example for developing crops dynamically adapted to abiotic stress. [ABSTRACT FROM AUTHOR]

BSD (mammalian B TF2-like transcription factors, s ynapse-associated proteins, and D OS2-like proteins) is a conserved domain that exists in a variety of organisms, but its function has not been well studied. Here, we identified a novel BSD domain-containing protein (SlBSD1) in tomato (Solanum lycopersicum). Biochemical and microscopy assays indicated that SlBSD1 is a functional transcription factor that is predominantly localized in the nucleus. Loss-of-function and overexpression analyses suggested that SlBSD1 is a novel regulator of vegetative growth and leaf senescence in tomato. SlBSD1 -knockdown (-KD) plants exhibited retarded vegetative growth and precocious leaf senescence, whereas SlBSD1 -overexpression (-OX) plants displayed the opposite phenotypes. The negative role of SlBSD1 in leaf senescence was also supported by RNA-seq analysis comparing leaf tissues from SlBSD1 -KD and wild-type plants. In addition, contents of soluble solids were altered in fruits in the SlBSD1 -KD and SlBSD1 -OX plants. Taken together, our data suggest that the novel transcription factor SlBSD1 plays important roles in controlling fruit quality and other physiological processes in tomato, including vegetative growth and leaf senescence. [ABSTRACT FROM AUTHOR]

Abstract: Seven in absentia (SINA) protein is one subgroup of ubiquitin ligases possessing an N‐terminal cysteine‐rich really interesting new gene (RING) domain, two zinc‐finger motifs, and a C‐terminal domain responsible for substrate‐binding and dimerization. In tomato (Solanum lycopersicum), the SINA gene family has six members, and we characterize in this study all tomato SINA (SlSINA) genes and the gene products. Our results show that SlSINA genes are differentially regulated in leaf, bud, stem, flower, and root. All SlSINA proteins possess RING‐dependent E3 ubiquitin ligase activity, exhibiting similar specificity towards the E2 ubiquitin‐conjugating enzyme. SlSINA1/3/4/5/6 are localized in both cytoplasm and nucleus, whereas SlSINA2 is exclusively localized in the nucleus. Moreover, all SlSINAs can interact with each other for homo‐ or hetero‐dimerization. The functionality of SlSINA proteins has been investigated. SlSINA4 plays a positive role in defense signalling, as manifested by elicitation of E3‐dependent hypersensitive response‐like cell death; the other SlSINAs are negative regulator and capable to suppress hypersensitive response cell death. Transgenic tomato plants overexpressing SlSINA2 exhibit pale‐green leaf phenotype, suggesting SlSINA2 regulates chlorophyll level in plant cells, whereas transgenic tomato plants overexpressing SlSINA5 have altered floral structure with exserted stigma, implicating SlSINA5 plays a role in flower development. [ABSTRACT FROM AUTHOR]

CULLIN4(CUL4)–DAMAGED DNA BINDING PROTEIN1 (DDB1)-based ubiquitin ligase plays significant roles in multiple physiological processes via ubiquitination-mediated degradation of relevant target proteins. The DDB1–CUL4-associated factor (DCAF) acts as substrate receptor in the CUL4–DDB1 ubiquitin ligase complex and determines substrate specificity. In this study, we identified a tomato ( Solanum lycopersicum ) DDB1-interacting (DDI1) protein as a DCAF protein involved in response to abiotic stresses, including UV radiation, high salinity and osmotic stress. Co-immunoprecipitation and bimolecular fluorescence complementation assay indicated that DDI1 associates with CUL4–DDB1 in the nucleus. Quantitative RT-PCR analysis indicated the DDI1 gene is induced by salt, mannitol and UV-C treatment. Moreover, transgenic tomato plants with overexpression or knockdown of the DDI1 gene exhibited enhanced or attenuated tolerance to salt/mannitol/UV-C, respectively. Thus, our data suggest that DDI1 functions as a substrate receptor of the CUL4–DDB1 ubiquitin ligase, positively regulating abiotic stress response in tomato. [ABSTRACT FROM AUTHOR]

Prolonging the fruit storage period is strategically important due to the limitation of postharvest life determined by excessive softening. Efforts have been made to alleviate the issue of fruit softening in transgenic fruit by suppressing genes that encode cell wall-degrading proteins. However, individual genes related to the degradation of cell walls have limited ability, resulting in minimal success. SET domain-containing protein (SET protein) is widely expressed in most plant organs and crucial in plant growth and development. A tomato SET protein was previously identified as SlDDI4 (Solanum lycopersicum DDB1 interacting protein 4) with a H3K9 methyltransferase activity involving cell proliferation and organ size regulation. In this study, we demonstrated that SlDDI4 overexpression (SlDDI4-OE) promotes fruit firmness in addition to increased fruit size. Further experimental investigations revealed that the increased expression of SlDDI4 inhibited cellulase and pectinase activities, consequently increasing the proportion of cellulose and insoluble pectin. RNA-seq profiling indicated the genes involved in cell wall metabolism in SlDDI4-OE fruit were significantly down-regulated. DNA methylation and McrBC-PCR analysis at the SlCEL2 , SlPG2 , and SlEXP12 loci revealed that their down-regulation was associated with the elevated methylation level in the individual promoter regions. Furthermore, up-regulation of SlDDI4 generated fruit with increased lycopene content and prolonging shelf-life by approximately 20 d without adverse impacts on the flavor indicators. Thus, our results suggest that manipulation of SlDDI4 expression enables broad favorable effects on postharvest life as well as fruit size and quality through chromatin remodeling. • Overexpression of SlDDI4 promotes fruit firmness. • SlDDI4 extends tomato shelf-life and boosts nutritional value. • SlDDI4 increases the proportion of cellulose and insoluble pectin in fruit tissue. • SlDDI4 represses cell wall degradation genes via promoter DNA methylation. [ABSTRACT FROM AUTHOR]