8 results on '"Zicca, Stefania"'
Search Results
2. Antagonistic activity of olive endophytic bacteria and of Bacillus spp. strains against Xylella fastidiosa.
- Author
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Zicca S, De Bellis P, Masiello M, Saponari M, Saldarelli P, Boscia D, and Sisto A
- Subjects
- Bacteria genetics, Bacteria isolation & purification, Bacteria metabolism, Biological Control Agents pharmacology, DNA, Bacterial genetics, Endophytes genetics, Endophytes metabolism, Pathology, Molecular, Plant Diseases microbiology, Plant Diseases therapy, Antibiosis, Bacillus metabolism, Endophytes isolation & purification, Olea microbiology, Xylella pathogenicity
- Abstract
Strains of Xylella fastidiosa subsp. pauca characterized by a specific genotype, the so called sequence type "ST53", have been associated with a severe disease named Olive Quick Decline Syndrome (OQDS). Despite the relevant research efforts devoted to control the disease caused by X. fastidiosa, so far there are no therapeutic means able to cure the infected host plants. As such, the aim of this study was the identification of antagonistic bacteria potentially deployable as bio-control agents against X. fastidiosa. To this end, two approaches were used, i.e. the evaluation of the antagonistic activity of: i) endophytic bacteria isolated from olive trees located in an infected area but showing mild or no symptoms, and ii) Bacillus strains, as they are already known as bio-control agents. Characterization of endophytic bacterial isolates revealed that the majority belonged to different species of the genera Sphingomonas, Methylobacterium, Micrococcus and Curtobacterium. However, when they were tested in vitro against X. fastidiosa ST53 none of them showed antagonistic activity. On the contrary, when strains belonging to different species of the genus Bacillus were included in these tests, remarkable antagonistic activities were recorded. Some B. velezensis strains also produced culture filtrates with inhibitory activity against X. fastidiosa ST53. Taking also into account that two of these B. velezensis strains (namely strains D747 and QST713) are already registered and commercially available as bio-control agents, our results pave the way for further studies aimed at the development of a sustainable bio-control strategy of the OQDS., (Copyright © 2020 Elsevier GmbH. All rights reserved.)
- Published
- 2020
- Full Text
- View/download PDF
3. Draft Genome Sequence Resources of Three Strains (TOS4, TOS5, and TOS14) of Xylella fastidiosa Infecting Different Host Plants in the Newly Discovered Outbreak in Tuscany, Italy.
- Author
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Giampetruzzi A, D'Attoma G, Zicca S, Abou Kubaa R, Rizzo D, Boscia D, Saldarelli P, and Saponari M
- Subjects
- Disease Outbreaks, Europe, Italy, Phylogeny, Plant Diseases microbiology, Sequence Analysis, DNA, Xylella
- Abstract
An outbreak of Xylella fastidiosa was discovered in late 2018 in northern Italy affecting several plant species. Multilocus sequence typing analyses detected the presence of strains clustering in X. fastidiosa subsp. multiplex and harboring a hitherto uncharacterized sequence type, ST87. Three cultured strains (TOS4, TOS5, and TOS14) were subjected to high-throughput sequencing and the draft genomes assembled. Phylogenetic analysis conclusively indicated that they belong to the subspecies multiplex . The genetic information generated for these newly discovered strains further supports the evidence that sequence types are associated with the emergence of X. fastidiosa in Europe, posing major challenges for predicting the main threatened European and Mediterranean crops and plant species.
- Published
- 2019
- Full Text
- View/download PDF
4. Genome-Wide Analysis Provides Evidence on the Genetic Relatedness of the Emergent Xylella fastidiosa Genotype in Italy to Isolates from Central America.
- Author
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Giampetruzzi A, Saponari M, Loconsole G, Boscia D, Savino VN, Almeida RPP, Zicca S, Landa BB, Chacón-Diaz C, and Saldarelli P
- Subjects
- Costa Rica, DNA, Bacterial genetics, Gene Expression Regulation, Bacterial, Italy, Phylogeny, Polymorphism, Single Nucleotide, Genome, Bacterial, Genome-Wide Association Study, Genotype, Xylella genetics
- Abstract
Xylella fastidiosa is a plant-pathogenic bacterium recently introduced in Europe that is causing decline in olive trees in the South of Italy. Genetic studies have consistently shown that the bacterial genotype recovered from infected olive trees belongs to the sequence type ST53 within subspecies pauca. This genotype, ST53, has also been reported to occur in Costa Rica. The ancestry of ST53 was recently clarified, showing it contains alleles that are monophyletic with those of subsp. pauca in South America. To more robustly determine the phylogenetic placement of ST53 within X. fastidiosa, we performed a comparative analysis based on single nucleotide polymorphisms (SNPs) and the study of the pan-genome of the 27 currently public available whole genome sequences of X. fastidiosa. The resulting maximum-parsimony and maximum likelihood trees constructed using the SNPs and the pan-genome analysis are consistent with previously described X. fastidiosa taxonomy, distinguishing the subsp. fastidiosa, multiplex, pauca, sandyi, and morus. Within the subsp. pauca, the Italian and three Costa Rican isolates, all belonging to ST53, formed a compact phylotype in a clade divergent from the South American pauca isolates, also distinct from the recently described coffee isolate CFBP8072 imported into Europe from Ecuador. These findings were also supported by the gene characterization of a conjugative plasmid shared by all the four ST53 isolates. Furthermore, isolates of the ST53 clade possess an exclusive locus encoding a putative ATP-binding protein belonging to the family of histidine kinase-like ATPase gene, which is not present in isolates from the subspecies multiplex, sandyi, and pauca, but was detected in ST21 isolates of the subspecies fastidiosa from Costa Rica. The clustering and distinctiveness of the ST53 isolates supports the hypothesis of their common origin, and the limited genetic diversity among these isolates suggests this is an emerging clade within subsp. pauca.
- Published
- 2017
- Full Text
- View/download PDF
5. Diagnostic pipeline and large-scale monitoring: the experience in the Apulian outbreak
- Author
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Saponari Maria, Percoco Anna, Caroppo Concetta, Specchia Francesco, Zicca Stefania, Loconsole Giuliana, and Boscia Donato
- Subjects
accuracy ,xylella ,detection ,large-scale monitoring ,plant health - Abstract
In Apulia (southern Italy) since 2016 one of the largest monitoring campaign in EU is ongoing, with an average number of 100.000 samples tested per year in the framework of the official monitoring program for Xylella fastidiosa, in the demarcated and Xylella-free areas. More than 85% of the samples were from olive trees, the remaining from almond, oleander and other host plants. Before the promulgation of the EU Regulation 2020/1201, the diagnostic program was organized with two levels of checks. Samples were first screened in 4 regional laboratories by ELISA, with each laboratories processing 300-600 samples/day. Samples yielding positive or doubtful ELISA-results along with 3-5% of the negative samples, were re-tested by qPCR as confirmation tests and for verifying the lab performance for the serological tests. An average of 8.000 sample/year were re-tested by qPCR. Using this large dataset of samples (double tested by ELISA and qPCR) we determined the diagnostic specificity and sensitivity of the test used, and assessed the influence of other factors (period of sampling, origin of the samples). Overall, less than 0.03% of the ELISA-tested samples could not be assigned as negative/positive (i.e. undetermined) and thus re-tested by qPCR, yielding in the majority of the cases (>85%) negative qPCR-results. The diagnostic sensitivity and specificity calculated on the panel of ELISA-negative/positive samples re-tested in qPCR, approx. 26.000 samples, were 94% and 97%, respectively. These values did not vary significantly when the results were analyzed based on the period of sampling or location of the sampled trees. In conclusion, under the specific scenario characterizing the Apulian epidemics (olive predominant host plants, climatic conditions) this diagnostic workflow had allowed to screen with good diagnostic accuracy a relevant number of samples/year. Given the need to replace ELISA with qPCR tests, the capability of the laboratories to process the samples is now reduced (approx. half samples/day) and other possibilities will be consider for the implementation of the upcoming monitoring campaign (i.e testing pooled samples) to ensure testing the same amount of samples., IT; PDF; donato.boscia@ipsp.cnr.it
- Published
- 2021
- Full Text
- View/download PDF
6. Search for crop species immune to Xylella fastidiosa subsp. pauca, ST53
- Author
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Montilon Vito, Vincenzo, Cavalieri, Giuseppe, Altamura, Zicca Stefania, Nicola, Savino Vito, Potere Oriana, and Leonardo, Susca
- Subjects
fungi ,xylella ,plant health ,immunity - Abstract
Up to date 35 different host species have been reported susceptible to Xylella fastidiosa, subsp. pauca, ST53 (Xfp), in the Apulia region (southern Italy). Xfp is genetically related to coffee strains of the subsp. pauca, particularly aggressive on olives, the predominant crop species in the area, and on other species (i.e. oleander, Acacia spp, Polygala myrtifolia). On the other hand, our previous investigations demonstrated that this genotype was not able to infect Vitis spp., several species of Citrus and the Prunus hybrid GF677. In the last 3 years, we extended the investigations by performing a series of artificial inoculations on different species, with the aim of identifying additional immune species. These included Pyrus communis, Juglans regia, Ceratonia siliqua, Mespilus germanica, Diospyros kaki, Citrus limon, Punica granatum, Persea americana. At least 10 plants for each species were needle-inoculated in 2017, along with susceptible controls (periwinkle and olive). Vector-mediated transmission was also used for P. americana, by caging the plants with Xfp-infected specimen of Philaenus spumarius. Inoculated plants were periodically inspected and sampled to assess bacterial multiplication and host colonization. Overall, the diagnostic tests performed during the 3 years post-inoculation did not reveal the presence of the bacterium in the tissues above (>10cm) the inoculation points of any of the inoculated plants. Detection occurred only when leaf petioles from the inoculation points were tested. Similarly, no positive detections occurred in the plants of P. americana exposed to infected insects. In addition, for C. limon, P. granatum, P. communis and C. siliqua surveys conducted in these last 3 years in the heavily infected area did not reveal the occurrence of natural infected plants. Overall, the data suggest that these species do not support the multiplication and the spread of the bacterium. However, even if for P. Americana needle-inoculations were complemented with vector transmissions, for the remaining species mechanical inoculations should be integrated by vector-mediated transmission tests for conclusive assessment of their immunity.
- Published
- 2021
7. Search for crop species immune to Xylella fastidiosa subsp. pauca, ST53
- Author
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Montilon Vito, Vincenzo, Cavalieri, Giuseppe, Altamura, Zicca Stefania, Nicola, Savino Vito, Potere Oriana, and Leonardo, Susca
- Subjects
2. Zero hunger ,fungi ,xylella ,plant health ,immunity - Abstract
Up to date 35 different host species have been reported susceptible to Xylella fastidiosa, subsp. pauca, ST53 (Xfp), in the Apulia region (southern Italy). Xfp is genetically related to coffee strains of the subsp. pauca, particularly aggressive on olives, the predominant crop species in the area, and on other species (i.e. oleander, Acacia spp, Polygala myrtifolia). On the other hand, our previous investigations demonstrated that this genotype was not able to infect Vitis spp., several species of Citrus and the Prunus hybrid GF677. In the last 3 years, we extended the investigations by performing a series of artificial inoculations on different species, with the aim of identifying additional immune species. These included Pyrus communis, Juglans regia, Ceratonia siliqua, Mespilus germanica, Diospyros kaki, Citrus limon, Punica granatum, Persea americana. At least 10 plants for each species were needle-inoculated in 2017, along with susceptible controls (periwinkle and olive). Vector-mediated transmission was also used for P. americana, by caging the plants with Xfp-infected specimen of Philaenus spumarius. Inoculated plants were periodically inspected and sampled to assess bacterial multiplication and host colonization. Overall, the diagnostic tests performed during the 3 years post-inoculation did not reveal the presence of the bacterium in the tissues above (>10cm) the inoculation points of any of the inoculated plants. Detection occurred only when leaf petioles from the inoculation points were tested. Similarly, no positive detections occurred in the plants of P. americana exposed to infected insects. In addition, for C. limon, P. granatum, P. communis and C. siliqua surveys conducted in these last 3 years in the heavily infected area did not reveal the occurrence of natural infected plants. Overall, the data suggest that these species do not support the multiplication and the spread of the bacterium. However, even if for P. Americana needle-inoculations were complemented with vector transmissions, for the remaining species mechanical inoculations should be integrated by vector-mediated transmission tests for conclusive assessment of their immunity., IT; PPT; leonardo.susca@uniba.it
8. Search for crop species immune to Xylella fastidiosa subsp. pauca, ST53
- Author
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Montilon Vito, Cavalieri Vincenzo, Altamura Giuseppe, Zicca Stefania, Savino Vito Nicola, Potere Oriana, and Susca Leonardo
- Subjects
2. Zero hunger ,xylella ,15. Life on land ,plant health ,immunity - Abstract
Up to date 35 different host species have been reported susceptible to Xylella fastidiosa, subsp. pauca, ST53 (Xfp), in the Apulia region (southern Italy). Xfp is genetically related to coffee strains of the subsp. pauca, particularly aggressive on olives, the predominant crop species in the area, and on other species (i.e. oleander, Acacia spp, Polygala myrtifolia). On the other hand, our previous investigations demonstrated that this genotype was not able to infect Vitis spp., several species of Citrus and the Prunus hybrid GF677. In the last 3 years, we extended the investigations by performing a series of artificial inoculations on different species, with the aim of identifying additional immune species. These included Pyrus communis, Juglans regia, Ceratonia siliqua, Mespilus germanica, Diospyros kaki, Citrus limon, Punica granatum, Persea americana. At least 10 plants for each species were needle-inoculated in 2017, along with susceptible controls (periwinkle and olive). Vector-mediated transmission was also used for P. americana, by caging the plants with Xfp-infected specimen of Philaenus spumarius. Inoculated plants were periodically inspected and sampled to assess bacterial multiplication and host colonization. Overall, the diagnostic tests performed during the 3 years post-inoculation did not reveal the presence of the bacterium in the tissues above (>10cm) the inoculation points of any of the inoculated plants. Detection occurred only when leaf petioles from the inoculation points were tested. Similarly, no positive detections occurred in the plants of P. americana exposed to infected insects. In addition, for C. limon, P. granatum, P. communis and C. siliqua surveys conducted in these last 3 years in the heavily infected area did not reveal the occurrence of natural infected plants. Overall, the data suggest that these species do not support the multiplication and the spread of the bacterium. However, even if for P. Americana needle-inoculations were complemented with vector transmissions, for the remaining species mechanical inoculations should be integrated by vector-mediated transmission tests for conclusive assessment of their immunity.  
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