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Although an increasing number of species-specific databases have been constructed to facilitate the global research community, comprehensive databases remain rare with multidimensional research resources rather than genomic data solely, in particular for non-model species. Here we introduced GinkgoDB, the ecological genome database for the world-renowned living fossil, Ginkgo biloba L. a tree species with extreme longevity, exceptional resistance, global landscape application and dioecy. The present version of GinkgoDB consists of four modules of genome, occurrence, quadrat and gallery. The genome module includes two versions of chromosome-level assembled genomes with high-quality annotation, expression profiles of each sex for different tissues and variants from 545 ginkgo genomes. A suite of tools were also deployed online for search, blast and further analyses. The occurrence module contains distribution information of over one million records across the world with an emphasis on 8926 individual-level tagged trees with phenotypic trait data in eastern Asia. The quadrat module provides monitoring data of both species and habitats from 27 plots of natural ginkgo forests and periodic data of functional traits measured for the entire plant communities. The gallery module collects field morphological photos and scanned phenotypic images of various ginkgo materials. GinkgoDB showcases a comprehensive and persistently growing database for a single non-model species. Database URL : https://ginkgo.zju.edu.cn/ [ABSTRACT FROM AUTHOR]

Gelsemium elegans, endemic to southern Asia, is a highly toxic plant with various medicinal functions. The complete mitochondrial genome of G. elegans was sequenced and assembled in this study. The genome is 405,990 bp in length and contains 37 protein-coding genes, 20 tRNA genes, and 3 rRNA genes. The phylogenetic tree based on 15 protein-coding genes common to six mitochondrial genomes in Gentianales support that G. elegans of Gelsemiaceae is sister to Apocynaceae. [ABSTRACT FROM AUTHOR]

Triadica sebifera, commonly known as Chinese tallow, is an important medicinal and biofuel plant native to eastern Asia. In the study, we assembled the complete chloroplast genome of T. sebifera based on Illumina pair-end sequencing data. The complete genome sequence length is 159,342 bp. Finally, 122 genes were identified, including 82 protein-coding genes, 8 rRNA genes, and 36 tRNA genes. Further phylogenomic analysis showed that T. sebifera is clustered with Euphorbia esula. [ABSTRACT FROM AUTHOR]

Kadsura (Schisandraceae) comprises ca. 16 species and widely distributes in eastern Asia. Many species in the genus were used as important medicinal plants in China and other Asian countries. In present study, we described the first Kadsura chloroplast genome, Kadsura longipedunculata, based on illumine pair-end sequencing data. The complete plastome length is 145,346 bp long with a large single copy, a small single copy, and two inverted repeat regions of length 94,947, 17,752, and 16,323 bp, respectively. A total of 118 genes were identified, including 75 protein-coding gens, 8 rRNA genes, and 34 tRNA genes. Eighteen plastome accessions from Austrobaileyales, Nymphaeales, and Magnoliales were selected to assess the phylogenetic placement of genus. [ABSTRACT FROM AUTHOR]