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Avoiding the undesirable impacts of invasive species requires robustly evaluating the effects of alternative management scenarios. Such evaluations depend on reliable spatio‐temporal projections of changes in the distribution and abundance of the invasive species under different scenarios. However, commonly used modelling approaches are constrained for this purpose because they do not incorporate demographic processes and are seldom validated.We develop a spatially and temporally explicit grid‐based population model for invasive fallow deer Dama dama in Tasmania, Australia, validated against observed distribution and abundance 'targets' using a pattern‐oriented approach. We use this validated model to project the future invasion patterns of deer, including encroachment into areas of high conservation value, under eight harvest and habitat suitability scenarios.Projected population sizes of deer differ greatly depending on harvest and habitat suitability scenarios. Without harvest, the population grows sixfold, from about 80,000 deer in 2019 to over 500,000 by 2100. In contrast, the population stabilises at 32,000–41,000 deer with 25% annual harvest. Abundance in the environmentally sensitive Tasmanian Wilderness World Heritage Area (TWWHA), a region of high conservation value, increases in all scenarios. We identify likely areas in the expanding range of deer where targeted removal should be most effective at minimising deer numbers in the TWWHA.Synthesis and applications: Using a pattern‐oriented model validated with spatio‐temporal data, we show how the future distribution and abundance of invasive fallow deer in Tasmania can be substantially reduced by targeted increases in harvest and prioritising areas for removal around high conservation value regions. Our approach can be used to project likely effects of management interventions on future distributions and abundances for a range of invasive taxa. [ABSTRACT FROM AUTHOR]

Invasive deer have undesirable impacts on native ecosystems. Culling is commonly used to reduce those impacts, but is expensive and sometimes controversial. It is therefore important to robustly assess how culling reduces the impacts of invasive deer.We conducted a Before‐After Control‐Impact (BACI) experiment to determine how culling affects the impacts of invasive sambar deer Cervus unicolor in an endangered alpine peatland ecosystem in south‐eastern Australia. We established two blocks, each with four 4300‐ha experimental units, in which two units were randomly assigned to a treatment of deer culling and the other two were non‐treatment areas. Sambar deer relative abundance (faecal pellet count) and three impacts (ground degradation, pugging intensity and water turbidity) in three peatland features (peatlands, natural pools and sambar deer wallows) were surveyed before and after culling was implemented. We used four metrics to quantify the culling intensity in each treatment unit: treatment versus non‐treatment, number of deer culled on each unit, deer culled within a 500‐m buffer of impact monitoring sites and local probability of use by the cullers (1‐ha grid). The effects of culling on deer abundance and impacts were estimated using Bayesian generalised linear mixed models.Our analysis revealed that the effect of culling differed between the two experimental blocks. In one block, culling reduced deer abundance and three impacts. In the other block, culling did not reduce deer abundance but reduced three impacts and increased two impacts. The effects of culling were generally stronger when culling was estimated using finer‐scale (500‐m) than coarser‐scale (experimental unit) culling metrics.Synthesis and applications. Our study provides experimental evidence that culling invasive sambar deer reduces some of their undesirable impacts on endangered peatlands. That not all impacts were reduced by culling suggests that some effects of invasive species are slow to recover or require higher culling intensities to be reversed. [ABSTRACT FROM AUTHOR]

Infections with the coccidian parasite Neospora caninum affect domestic and wild animals worldwide. In Australia, N. caninum infections cause considerable losses to the cattle industry with seroprevalence of 8.7% in beef and 10.9% in dairy cattle. Conversely, the role of wild animals, in maintaining the parasite cycle is also unclear. It is possible that native or introduced herbivorous species could be reservoir hosts of N. caninum in Australia, but to date, this has not been investigated. We report here the first large-scale screening of N. caninum antibodies in Australian wild deer, spanning three species (fallow, red and sambar deer). Consequently, we also assessed two commercial cELISA tests validated for detecting N. caninum in cattle for their ability to detect N. caninum antibodies in serum samples of wild deer. N. caninum antibodies were detected in 3.7% (7/189, 95% CI 1.8 – 7.45) of the wild deer serum samples collected in south-eastern Australia (n = 189), including 97 fallow deer (Dama dama), 14 red deer (Cervus elaphus), and 78 sambar deer (Rusa unicolor). Overall, our study provides the first detection of N. caninum antibodies in wild deer and quantifies deer's potential role in the sylvatic cycle of N. caninum. [ABSTRACT FROM AUTHOR]

Multi‐strain, host‐disease dynamics describe a system where multiple strains of a pathogen compete for susceptible individuals of a single host. The theoretical properties of these systems have been well studied, but there are few empirical studies in wildlife hosts.We examined the impacts of two novel strains of rabbit haemorrhagic disease virus (RHDV) recently introduced into Australia, one inadvertently (RHDV2) and one deliberately for rabbit biocontrol (RHDV‐K5), by analysing long‐term monitoring data for introduced European rabbits Oryctolagus cuniculus from 18 sites throughout Australia. We examined population‐level impacts using rabbit spotlight counts pre‐ and post‐arrival of the two strains. We also analysed serological data to determine potential interactions among the introduced and existing field strains of RHDV, as well as a pre‐existing benign strain of calicivirus (RCV‐A1).Serological analyses suggested that RHDV2 arrived in Australia during spring 2014 and spread rapidly through the Australian rabbit population within 2 years. Following the establishment of RHDV2, rabbit abundance was reduced by an average of 60%, with impacts most pronounced in South and Western Australia. In contrast, the deliberate release of RHDV‐K5 had little impact on rabbit populations.Although RHDV2 has spread rapidly throughout Australia, our serological analyses do not support the observation that RHDV2 is rapidly replacing existing field strains of RHDV, as was previously reported in Australia and Europe. Nevertheless, RHDV2 has negatively impacted the ability of RHDV and RCV‐A1 to spread within rabbit populations, most likely due to its ability to infect juvenile rabbits, thereby removing them from the pool of susceptible individuals available to be infected by competing strains.Synthesis and applications. The impact of the release of a novel strain of rabbit haemorrhagic disease virus (RHDV‐K5) for rabbit biocontrol in Australia has been suppressed by the emergence of a competing strain, RHDV2. Hence, the success of further releases of similar RHDV strains for rabbit biocontrol appears doubtful. Despite this, RHDV2 has suppressed rabbit abundances by an average of 60%, with impacts most pronounced in South and Western Australia. Whether the incursion of RHDV2 leads to the competitive exclusion of other endemic RHDV strains remains to be resolved. However, the existence of partial cross‐immunity could allow some level of coexistence between RHDV2 and RHDV strains, at least in the medium term. [ABSTRACT FROM AUTHOR]

Exposure of scavenging wildlife to lead from ammunition is a worldwide problem for wildlife management, but there has been little research on this topic in Australia. To examine which species of scavenging birds are potentially at risk of harmful exposure to lead, we deployed camera-traps to observe avian scavenger behaviour on carcasses of non-native and native mammals shot with lead-based bullets in two different locations in Victoria. We monitored 30 Sambar Deer Rusa unicolor carcasses in temperate eastern Victoria and 48 kangaroo Macropus spp. carcasses in semi-arid north-western Victoria. At least eight avian taxa scavenged from carcasses, including Wedge-tailed Eagles Aquila audax, Little Eagles Hieraaetus morphnoides, Brown Goshawks Accipiter fasciatus, Whistling Kites Haliastur sphenurus, ravens/crows Corvus spp., and three species belonging to the family Artamidae. Fifty-six percent of all carcasses were visited by birds. Corvids visited the most carcasses and typically arrived first, whereas Wedge-tailed Eagles arrived second but individually spent more time feeding. Our results indicate that a diverse avian scavenger community consumes carcasses of shot mammals in Australia, and consequently could be exposed to lead from bullet fragments. [ABSTRACT FROM AUTHOR]

Identifying landscape features and processes that facilitate the persistence of populations is particularly important for invasive mammal species, because it can focus management interventions on relatively small areas. We used camera traps to test predictions concerning the relative abundance of invading chital deer (Axis axis) on seven cattle ranches in northern Australia: that abundance of chital deer would be highest near permanent water and near homesteads, and that dingoes (Canis dingo) reduce abundance of chital deer. Distance from the nearest homestead determined deer abundance (as indexed by images per camera-day), with negligible abundance > 4 km from homesteads. In contrast, distance from homestead did not predict abundance of feral pigs (Sus scrofa), macropods, or dingoes. Abundance of chital deer also declined with increasing distance from water, as did feral pig abundance. There was no relationship between either macropod or dingo abundance and distance to water. The abundance of chital deer was unaffected by dingo abundance, but 75–100% of dingo scats collected within 1 km of homesteads contained chital deer. The high abundances of chital deer near homesteads are likely due to increased food quality or quantity, or protection from dingoes, but these hypotheses require further testing. We conclude that homesteads and permanent water are important determinants of the distribution and abundance of invasive chital deer in northern Australia (i.e. they are "invasion hubs" for this species). Our results suggest that, during the dry season, managers should survey for and attempt to control chital deer within 4 km of homesteads and within 3 km of water. [ABSTRACT FROM AUTHOR]

Estimating population abundances, densities, and interspecific interactions are common goals in wildlife management. Camera traps have been used to estimate the abundance and density of a single species, and are useful for carnivores that occur at low densities. Spatial capture–recapture (SCR) models can be used to estimate abundance and density from a camera trap array when all, some, or no individuals in the population can be uniquely identified. These SCR models also estimate locations of individual activity centers, the spatial patterning of which could provide important information about interspecific interactions. We used SCR models to estimate abundances, densities, and activity centers of each of 3 carnivore species (i.e., dingo [Canis familiaris], red fox [Vulpes vulpes], and feral cat) using photographs from 1 camera trap array in southeastern Australia during September to November 2015. Some dingoes and feral cats were uniquely identifiable and therefore, we used a spatial mark–resight model for these species. We could not uniquely identify fox individuals, however, so we used a spatial unmarked (SUN) model for this species. Our estimated dingo density was 0.06/km2. The fox (0.25/km2) and feral cat (0.16/km2) densities are within the ranges previously reported for these species in Australia. We obtained a relatively imprecise fox density estimate because we did not have detections of uniquely identifiable individuals; hence, the SUN model should be used as a last resort. We next modeled spatial dependence among the estimated activity centers for the 3 species using a spatial pair correlation function for a marked point process. Consistent with our expectations, the activity centers of dingoes and foxes were strongly negatively associated at distances of <1,000 m. Foxes and feral cats were also negatively associated at distances of <1,500 m. Surprisingly, dingoes and feral cats were positively associated at distances of >500 m, with no association evident at distances of <500 m. Our study extends the inferences that can be made from using a camera trap array and SCR methods to include spatial patterning and interspecific interactions, and provides new insights into the carnivore community of dingoes, foxes, and feral cats in southeastern Australia. © 2019 The Authors. The Journal of Wildlife Management Published by Wiley Periodicals, Inc. We used spatial capture–recapture models to estimate abundances, densities, and interspecific spatial associations of 3 carnivore species (dingo, red fox, and feral cat) using photographs from one camera‐trap array in southeastern Australia. Our methods can be used to estimate abundances, densities, and interspecific spatial associations elsewhere, providing robust information that will greatly assist managers and researchers working with wildlife communities. [ABSTRACT FROM AUTHOR]

Dingoes/wild dogs (Canis dingo/familiaris) and red foxes (Vulpes vulpes) are widespread carnivores in southern Australia and are controlled to reduce predation on domestic livestock and native fauna. We used the occurrence of food items in 5875 dingo/wild dog scats and 11,569 fox scats to evaluate interspecific and geographic differences in the diets of these species within nine regions of Victoria, south-eastern Australia. The nine regions encompass a wide variety of ecosystems. Diet overlap between dingoes/wild dogs and foxes varied among regions, from low to near complete overlap. The diet of foxes was broader than dingoes/wild dogs in all but three regions, with the former usually containing more insects, reptiles and plant material. By contrast, dingoes/wild dogs more regularly consumed larger mammals, supporting the hypothesis that niche partitioning occurs on the basis of mammalian prey size. The key mammalian food items for dingoes/wild dogs across all regions were black wallaby (Wallabia bicolor), brushtail possum species (Trichosurus spp.), common wombat (Vombatus ursinus), sambar deer (Rusa unicolor), cattle (Bos taurus) and European rabbit (Oryctolagus cuniculus). The key mammalian food items for foxes across all regions were European rabbit, sheep (Ovis aries) and house mouse (Mus musculus). Foxes consumed 6.1 times the number of individuals of threatened Critical Weight Range native mammal species than did dingoes/wild dogs. The occurrence of intraguild predation was asymmetrical; dingoes/wild dogs consumed greater biomass of the smaller fox. The substantial geographic variation in diet indicates that dingoes/wild dogs and foxes alter their diet in accordance with changing food availability. We provide checklists of taxa recorded in the diets of dingoes/wild dogs and foxes as a resource for managers and researchers wishing to understand the potential impacts of policy and management decisions on dingoes/wild dogs, foxes and the food resources they interact with. [ABSTRACT FROM AUTHOR]

ABSTRACT Failure to account for dependencies among observers in multiple-observer capture-recapture studies will lead to biased inference yet methods that account for dependencies are poorly developed. We combined hierarchical capture-recapture models and finite sampling theory to infer population abundance of koala ( Phascolarctos cinereus) in the 5,812-ha Mount Eccles National Park, southeastern Australia. We used plot replication to build a Bayesian hierarchical model of koala sightings by multiple observers. Given the number of koala present on a plot, we modeled counts of koala by a multinomial log-linear model with interaction terms to account for between-observer dependencies. We modeled total numbers using a Poisson log-linear model with covariate and random effects. We estimated the number of koala as 1.9 koala/ha (95% CI = 1.6, 2.4). We found evidence of between-observer interactions, highlighting the importance of having at least 3 observers in multiple observer studies. © 2014 The Wildlife Society. [ABSTRACT FROM AUTHOR]

The exploitation ecosystems hypothesis (EEH) proposes that 1) plant biomass reflects the primary productivity of an ecosystem modified by the regulating effect of herbivory, and 2) herbivore abundance reflects the productivity of plants modified by the regulating effect of predation. Primary productivity thus determines the number of trophic levels in an ecosystem and the extent to which bottom-up and top-down regulation influence the biomass ratios of adjacent and non-adjacent trophic levels (i.e. trophic cascading). We constructed an interactive model of plant (pasture), herbivore (red kangaroo Macropus rufus) and predator (dingo Canis lupus dingo), a system in which trophic cascades have been suggested to occur, and used it to test the effects of increasing stochastic variation in primary productivity and dingo culling on predictions of the EEH. The model contained four feedback loops: the predator-herbivore and herbivore-plant feedback loops, and the predator and plant density-dependent feedback loops. The equilibrium conditions along the primary productivity gradient reproduced the three zones of trophic dynamics predicted by the EEH, plus an additional zone at productivities above which the maximum density of a predator is achieved due to social regulation: that zone is characterized by increasing herbivore density and decreasing plant biomass. Culling dingoes produced trophic cascades that were strongly attenuated at primary productivities below which the maximum density of dingoes was attained. Results were robust to uncertainty in kangaroo off-take by dingoes and to the efficacy of dingo culling, but prey switching by dingoes from red kangaroos to reptiles would weaken trophic cascades. We conclude that social regulation of carnivores has important implications for expression of the EEH and trophic cascades, and that attenuation of trophic cascades increases with increasing stochasticity in primary productivity. Our model also provides a framework for understanding the conditions in which dingo-mediated trophic cascades might be expected to occur, and generates testable predictions about the effects of higher dingo densities (e.g. by stopping culling or reintroduction to former range) on kangaroo and pasture dynamics. [ABSTRACT FROM AUTHOR]

Estimating diet is often an important step in understanding and managing the impacts of ungulates, particularly for non-native species, but there is uncertainty about whether rumen contents should be assessed using macroscopic or microhistological methods or both. Introduced sambar deer (Cervus unicolor) have a large and increasing distribution in south-east Australia, and there is concern about their impacts on native and non-indigenous plant species. We estimated the diets of 102 sambar deer harvested during 2007-2009 using macroscopic and microhistological rumen analysis techniques. We identified 105 plant species in the diets of sambar deer, 61 identified with both techniques and 22 identified only macroscopically or only microhistologically. Rumen species richness was 70% greater using the microhistological technique. Estimates of taxonomic (i.e., monocot and dicot) and functional (i.e., fern, shrub-tree, forb, climber, grass, and grass-like) group composition by the 2 techniques were similar. Shrubs-trees dominated the diet (macroscopic, 49.7%; microhistological, 52.7%), followed by grasses (macroscopic, 22.7%; microhistological, 17.5%) and ferns (macroscopic, 20.6%; microhistological, 22.2%). We identified 9 non-indigenous plant species, 2 of which we identified using only the microhistological technique. We detected seeds of the weed blackberry (Rubus fruticosus aggregate), sometimes in large amounts, only with the macroscopic technique, whereas we detected foliage of that species with both techniques. Both techniques classified sambar deer as an intermediate mixed feeder closer to a concentrate selector-browser than a bulk and roughage feeder. However, both techniques detected seasonal differences in the percentages of taxonomic and functional groups in the diet; sambar deer were more grazers in autumn and more browsers in spring. Our results indicate that both macroscopic and microhistological techniques may need to be used when it is important to identify plant species in the diet, as is often the case for non-native ungulates. However, either technique can be used to estimate broader taxonomic and functional diet composition, including feeding type. [ABSTRACT FROM AUTHOR]

Endogenous retroviruses (ERVs) are the remnants of past retroviral infections that once invaded the host's germline and were vertically transmitted. ERV sequences have been reported in mammals, but their distribution and diversity in cervids are unclear. Using next-generation sequencing, we identified a nearly complete genome of an endogenous betaretrovirus in fallow deer (Dama dama). Further genomic analysis showed that this provirus, tentatively named cervid endogenous betaretrovirus 1 (CERV β1), has typical betaretroviral genome features (gag-pro-pol-env) and the betaretrovirus-specific dUTPase domain. In addition, CERV β1 pol sequences were detected by PCR in the six non-native deer species with wild populations in Australia. Phylogenetic analyses demonstrated that CERV β1 sequences from subfamily Cervinae clustered as sister taxa to ERV-like sequences in species of subfamily Muntiacinae. These findings, therefore, suggest that CERV β1 endogenisation occurred after the split of these two subfamilies (between 3.3 and 5 million years ago). Our results provide important insights into the evolution of betaretroviruses in cervids. [ABSTRACT FROM AUTHOR]

1. Many species of wildlife are harvested for sale but there are few time-series analyses of the factors determining the number of animals harvested. Economic theory predicts that price paid per animal is likely to be an important determinant of the harvest, but prices paid for alternative activities could reduce the harvest, and environmental factors such as rainfall could either constrain or enhance the harvest. 2. About 1 million feral goats Capra hircus L. are commercially harvested annually in the semi-arid rangelands of Australia, and there is much interest in how the harvest can be maximized so that the environmental impacts of the goats are minimized. 3. We developed 27 candidate models to explain monthly variation in the numbers of feral goats commercially harvested in Western Australia during July 1988 to June 2003. We fitted linear AR(1) models to the first 89 months of data and used Akaike's Information Criterion corrected for small sample size to identify the model(s) with substantial support. We then evaluated how much variation in the latter 88 months of the time series each model explained. 4. Almost 2·9 million feral goats were harvested in the study period. The two models with substantial support accounted for 70·5% and 70·6% of variation in the number of feral goats harvested during the first 89 months and 64·6% and 66·7% of variation in the subsequent 88 months. The models both included month of harvest and negative effects of rainfall in both the month of harvest and the previous month. One of the models also included a strong positive effect of the Australian Consumer Price Index-adjusted average price paid per feral goat on the number of feral goats harvested, and this model had the most support when fitted to the entire time series. 5. Synthesis and applications. This is the first study to demonstrate how both an environmental factor (rainfall) and an economic factor (average price paid per animal) can influence the size of a commercial wildlife harvest. Whilst managers can seldom modify environmental factors, our results suggest that the size of a wildlife harvest can be manipulated by altering the economics of the harvest. [ABSTRACT FROM AUTHOR]

The use of high-throughput sequencing has facilitated virus discovery in wild animals and helped determine their potential threat to humans and other animals. We report the complete genome sequence of a novel picornavirus identified by next-generation sequencing in faeces from Australian fallow deer. Genomic analysis revealed that this virus possesses a typical picornavirus-like genomic organisation of 7554 nt with a single open reading frame (ORF) encoding a polyprotein of 2225 amino acids. Based on the amino acid identity comparison and phylogenetic analysis of the P1, 2C, 3CD, and VP1 regions, this novel picornavirus was closely related to but distinct from known bopiviruses detected to date. This finding suggests that deer/bopivirus could belong to a novel species within the genus Bopivirus, tentatively designated as "Bopivirus C". Epidemiological investigation of 91 deer (71 fallow, 14 sambar and 6 red deer) and 23 cattle faecal samples showed that six fallow deer and one red deer (overall prevalence 7.7%, 95% confidence interval [CI] 3.8–15.0%) tested positive, but deer/bopivirus was undetectable in sambar deer and cattle. In addition, phylogenetic and sequence analyses indicate that the same genotype is circulating in south-eastern Australia. To our knowledge, this study reports for the first time a deer-origin bopivirus and the presence of a member of genus Bopivirus in Australia. Further epidemiological and molecular studies are needed to investigate the geographic distribution and pathogenic potential of this novel Bopivirus species in other domestic and wild animal species. [ABSTRACT FROM AUTHOR]

Government conservation agencies in New Zealand and the Australian state of Victoria spend 20% and 4%, respectively, of their annual budgets to manage a small part of the problem caused by introduced mammals. Managers' uncertainty about the optimal strategies for applying pest control has led to major differences in management practices within the single pest control programs in both countries. Monitoring under a trial-and-error approach has not removed uncertainty but has led managers to support the application of adaptive management for their pest control Control of brushtail possums (Trichosurus vulpecula) in New Zealand and red foxes (Vulpes vulpes) in Victoria, Australia, is conducted over large areas in many operations, but individual managers apply different control regimes based on the perceived benefits and opportunity costs. We report on the processes used to set up the first adaptive management experiments in pest control in New Zealand or Australia that combine the competing models approach (used when only a single management regime can be applied at one time) with an experimental approach (made possible when different management regimes are applied simultaneously in different places) with the aim of elucidating benefits and costs of the different strategies used to control the 2 pests. [ABSTRACT FROM AUTHOR]

Major progress in understanding biological invasions has recently been made by quantitatively comparing successful and unsuccessful invasions. We used such an approach to test hypotheses about the role of climatic suitability, life history, and historical factors in the establishment and subsequent spread of 40 species of mammal that have been introduced to mainland Australia. Relative to failed species, the 23 species that became established had a greater area of climatically suitable habitat available in Australia, had previously become established elsewhere, had a larger overseas range, and were introduced more times. These relationships held after phylogeny was controlled for, but successful species were also significantly more likely to be nonmigratory. A forward-selection model included only two of the nine variables for which we had data for all species: climatic suitability and introduction effort. When the model was adjusted for phylogeny, those same two variables were included, along with previous establishment success. Of the established species, those with a larger geographic range size in Australia had a greater area of climatically suitable habitat, had traits associated with a faster population growth rate (small body size, shorter life span, lower weaning age, more offspring per year), were nonherbivorous, and had a larger overseas range size. When the model was adjusted for phylogeny, the importance of climatic suitability and the life-history traits remained significant, but overseas range size was no longer important and species with greater introduction effort had a larger geographic range size. Two variables explained variation in geographic range size in a forward-selection model: species with smaller body mass and greater longevity tended to have larger range sizes in Australia. These results mirror those from a recent analysis of exotic-bird introductions into Australia, suggesting that, at least among vertebrate taxa, similar factors predict establishment and spread. Our approach and results are being used to assess the risks of exotic vertebrates becoming established and spreading in Australia. [ABSTRACT FROM AUTHOR]

Summary 1.We investigated factors hypothesized to influence introduction success and subsequent geographical range size in 52 species of bird that have been introduced to mainland Australia. 2.The 19 successful species had been introduced more times, at more sites and in greater overall numbers. Relative to failed species, successfully introduced species also had a greater area of climatically suitable habitat available in Australia, a larger overseas range size and were more likely to have been introduced successfully outside Australia. After controlling for phylogeny these relationships held, except that with overseas range size and, in addition, larger-bodied species had a higher probability of introduction success. There was also a marked taxonomic bias: gamebirds had a much lower probability of success than other species. A model including five of these variables explained perfectly the patterns in introduction success across-species. 3.Of the successful species, those with larger geographical ranges in Australia had a greater area of climatically suitable habitat, traits associated with a faster population growth rate (small body size, short incubation period and more broods per season) and a larger overseas range size. The relationships between range size in Australia, the extent of climatically suitable habitat and overseas range size held after controlling for phylogeny. 4.We discuss the probable causes underlying these relationships and why, in retrospect, the outcome of bird introductions to Australia are highly predictable. [ABSTRACT FROM AUTHOR]

Picobirnaviruses (PBVs) have been detected in several species of animals worldwide; however, data pertaining to their presence in Australian wild and domestic animals are limited. Although PBVs are mostly found in faecal samples, their detection in blood and respiratory tract samples raises questions concerning their tropism and pathogenicity. We report here PBV detection in wild deer and cattle from southeastern Australia. Through metagenomics, the presence of PBV genogroups I (GI) and II (GII) were detected in deer serum and plasma. Molecular epidemiology studies targeting the partial RNA-dependent RNA polymerase gene were performed in a wide range of specimens (serum, faeces, spleen, lung, nasal swabs, and trachea) collected from wild deer and cattle, with PCR amplification obtained in all specimen types except lung and spleen. Our results reveal the predominance of GI and concomitant detection of both genogroups in wild deer and cattle. In concordance with other studies, the detected GI sequences displayed high genetic diversity, however in contrast, GII sequences clustered into three distinct clades. Detection of both genogroups in the upper respiratory tract (trachea and nasal swab) of deer in the present study gives more evidence about the respiratory tract tropism of PBV. Although much remains unknown about the epidemiology and tropism of PBVs, our study suggests a wide distribution of these viruses in southeastern Australia. [ABSTRACT FROM AUTHOR]

Since deer were introduced into Australia in the mid-1800s, their wild populations have increased in size and distribution, posing a potential risk to the livestock industry, through their role in pathogen transmission cycles. In comparison to livestock, there are limited data on viral infections in all wildlife, including deer. The aim of this study was to assess blood samples from wild Australian deer for serological evidence of exposure to relevant viral livestock diseases. Blood samples collected across eastern Australia were tested by ELISA to detect antigens and antibodies against Pestivirus and antibodies against bovine herpesvirus 1. A subset of samples was also assessed by RT-PCR for Pestivirus, Simbu serogroup, epizootic hemorrhagic disease virus and bovine ephemeral fever virus. Our findings demonstrated a very low seroprevalence (3%) for ruminant Pestivirus, and none of the other viruses tested were detected. These results suggest that wild deer may currently be an incidental spill-over host (rather than a reservoir host) for Pestivirus. However, deer could be a future source of viral infections for domestic animals in Australia. Further investigations are needed to monitor pathogen activity and quantify possible future infectious disease impacts of wild deer on the Australian livestock industry. [ABSTRACT FROM AUTHOR]

With ongoing introductions into Australia since the 1700s, the European rabbit (Oryctolagus cuniculus) has become one of the most widely distributed and abundant vertebrate pests, adversely impacting Australia's biodiversity and agroeconomy. To understand the population and range dynamics of the species and its impacts better, occurrence and abundance data have been collected by researchers and citizens from sites covering a broad spectrum of climatic and environmental conditions in Australia. The lack of a common and accessible repository for these data has, however, limited their use in determining important spatiotemporal drivers of the structure and dynamics of the geographical range of rabbits in Australia. To meet this need, we created the Australian National Rabbit Database, which combines more than 50 yr of historical and contemporary survey data collected from throughout the range of the species in Australia. The survey data, obtained from a suite of complementary monitoring methods, were combined with high‐resolution weather, climate, and environmental information, and an assessment of data quality. The database provides records of rabbit occurrence (689,265 records) and abundance (51,241 records, >120 distinct sites) suitable for identifying the spatiotemporal drivers of the rabbit's distribution and for determining spatial patterns of variation in its key life‐history traits, including maximum rates of population growth. Because all data are georeferenced and date stamped, they can be coupled with information from other databases and spatial layers to explore the potential effects of rabbit occurrence and abundance on Australia's native wildlife and agricultural production. The Australian National Rabbit Database is an important tool for understanding and managing the European rabbit in its invasive range and its effects on native biodiversity and agricultural production. It also provides a valuable resource for addressing questions related to the biology, success, and impacts of invasive species more generally. No copyright or proprietary restrictions are associated with the use of this data set other than citation of this Data Paper. [ABSTRACT FROM AUTHOR]

Management agencies commonly control non-native mammalian predators to protect native prey populations, but there are few robust examples of such control enhancing native prey populations. We conducted a 9-year landscape-scale management experiment to evaluate the benefits of controlling the invasive red fox ( Vulpes vulpes ) to low densities for three native ground-dwelling mammalian prey species—common brushtail possum ( Trichosurus vulpecula ), long-nosed potoroo ( Potorous tridactylus ) and southern brown bandicoot ( Isoodon obesulus )—in south-east Australian forests. We hypothesized that sustained and spatially extensive fox control would reduce fox abundance and increase occupancy, colonization and persistence rates for all three prey species in three treatment areas relative to three non-treatment areas. There was a substantial decline in bait take by foxes in treatment areas from 2005 to 2013, and fox abundances were much lower in treatment than non-treatment areas throughout the experiment. Occupancy rates of all three native prey species increased in treatment areas relative to non-treatment areas, although the magnitude of the increase varied with species, treatment area, and time. Colonization and persistence rates were not always positive for all species and all treatment areas. Our experiment demonstrates that foxes can be reduced to, and maintained at, low abundances and that this has a generally positive effect on the occupancy by small native mammalian prey species. [ABSTRACT FROM AUTHOR]

There is interest in large-scale and unbiased monitoring of biodiversity status and trend, but there are few published examples of such monitoring being implemented. The New Zealand Department of Conservation is implementing a monitoring program that involves sampling selected biota at the vertices of an 8-km grid superimposed over the 8.6 million hectares of public conservation land that it manages. The introduced brushtail possum (Trichosurus Vulpecula) is a major threat to some biota and is one taxon that they wish to monitor and report on. A pilot study revealed that the traditional method of monitoring possums using leg-hold traps set for two nights, termed the Trap Catch Index, was a constraint on the cost and logistical feasibility of the monitoring program. A phased implementation of the monitoring program was therefore conducted to collect data for evaluating the trade-off between possum occupancy-abundance estimates and the costs of sampling for one night rather than two nights. Reducing trapping effort from two nights to one night along four trap-lines reduced the estimated costs of monitoring by 5.8% due to savings in labour, food and allowances; it had a negligible effect on estimated national possum occupancy but resulted in slightly higher and less precise estimates of relative possum abundance. Monitoring possums for one night rather than two nights would provide an annual saving of NZ$72,400, with 271 fewer field days required for sampling. Possums occupied 60% (95% credible interval; 53-68) of sampling locations on New Zealand's public conservation land, with a mean relative abundance (Trap Catch Index) of 2.7% (2.0-3.5). Possum occupancy and abundance were higher in forest than in non-forest habitats. Our case study illustrates the need to evaluate relationships between sampling design, cost, and occupancy-abundance estimates when designing and implementing large-scale occupancy-abundance monitoring programs.

Adoption is rare in animals and is usually attributed to kin selection. In a 6-year study of eastern grey kangaroos (Macropus giganteus), 11 of 326 juveniles were adopted. We detected eight adoptions by observing behavioural associations and nursing between marked mothers and young and three more by analysing the relatedness of mothers and young using microsatellite DNA. Four adoptions involved reciprocal switches and three were by mothers whose own pouch young were known to subsequently disappear. Adoptive mothers were not closely related to each other or to adoptees but adoptive mothers and young associated as closely as did biological pairs, as measured by half-weight indices. Switch mothers did not associate closely. Maternal age and body condition did not influence the likelihood of adoption but females were more likely to adopt in years with high densities of females with large pouch young. Adoption did not improve juvenile survival. We conclude that adoptions in this wild population were potentially costly and likely caused by misdirected care, suggesting that eastern grey kangaroos may have poorly developed mother-offspring recognition mechanisms.