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Wildfire modifies the short- and long-term exchange of carbon between terrestrial ecosystems and the atmosphere, with impacts on ecosystem services such as carbon uptake. Dry western US forests historically experienced low-intensity, frequent fires, with patches across the landscape occupying different points in the fire-recovery trajectory. Contemporary perturbations, such as recent severe fires in California, could shift the historic stand-age distribution and impact the legacy of carbon uptake on the landscape. Here, we combine flux measurements of gross primary production (GPP) and chronosequence analysis using satellite remote sensing to investigate how the last century of fires in California impacted the dynamics of ecosystem carbon uptake on the fire-affected landscape. A GPP recovery trajectory curve of more than five thousand fires in forest ecosystems since 1919 indicated that fire reduced GPP by 157:4 ± 7:3 g C m-2 y-1(mean ± SE, n = 1926) in the first year after fire, with average recovery to prefire conditions after ~12 y. The largest fires in forested ecosystems reduced GPP by 393:8 ± 15:7 g C m-2 y-1 (n = 401) and took more than two decades to recover. Recent increases in fire severity and recovery time have led to nearly 9:9 ± 3:5 MMT CO2 (3-y rolling mean) in cumulative forgone carbon uptake due to the legacy of fires on the landscape, complicating the challenge of maintaining California's natural and working lands as a net carbon sink. Understanding these changes is paramount to weighing the costs and benefits associated with fuels management and ecosystem management for climate change mitigation. [ABSTRACT FROM AUTHOR]

We test the relationship between canopy photosynthesis and reflected near‐infrared radiation from vegetation across a range of functional (photosynthetic pathway and capacity) and structural conditions (leaf area index, fraction of green and dead leaves, canopy height, reproductive stage, and leaf angle inclination), weather conditions, and years using a network of field sites from across central California. We based our analysis on direct measurements of canopy photosynthesis, with eddy covariance, and measurements of reflected near‐infrared and red radiation from vegetation, with light‐emitting diode sensors. And we interpreted the observed relationships between photosynthesis and reflected near‐infrared radiation using simulations based on the multilayer, biophysical model, CanVeg. Measurements of reflected near‐infrared radiation were highly correlated with measurements of canopy photosynthesis on half‐hourly, daily, seasonal, annual, and decadal time scales across the wide range of function and structure and weather conditions. Slopes of the regression between canopy photosynthesis and reflected near‐infrared radiation were greatest for the fertilized and irrigated C4 corn crop, intermediate for the C3 tules on nutrient‐rich organic soil and nitrogen fixing alfalfa, and least for the native annual grasslands and oak savanna on nutrient‐poor, mineral soils. Reflected near‐infrared radiation from vegetation has several advantages over other remotely sensed vegetation indices that are used to infer canopy photosynthesis; it does not saturate at high leaf area indices, it is insensitive to the presence of dead legacy vegetation, the sensors are inexpensive, and the reflectance signal is strong. Hence, information on reflected near‐infrared radiation from vegetation may have utility in monitoring carbon assimilation in carbon sequestration projects or on microsatellites orbiting Earth for precision agriculture applications. Key Points: Reflected near‐infrared radiation is a strong proxy for canopy photosynthesisThis proxy works for a wide range of ecosystem structure and functionThe method has promise to be used for a variety of applications relating to carbon and water use [ABSTRACT FROM AUTHOR]

Salinity gradients across estuaries influence wetland carbon storage, methane (CH4) biogeochemistry, and plant productivity. Estuarine freshwater wetlands may experience increases in salinity during drought; however, the impact of salinization on greenhouse gas (GHG) emissions is uncertain. We measured ecosystem-scale GHG emissions from a wetland experiencing salinization during the 2011–2017 California drought and used information theory analyses to quantify couplings and causal interactions between CH4 fluxes and two dominant environmental drivers; gross ecosystem photosynthesis and temperature. Machine learning models were then used to estimate salinization-induced changes in CH4 fluxes and plant productivity. We observed dynamic CH4 flux-driver relationships across the salinization disturbance event, where temperature connections strengthened, and productivity connections dampened during salinization. Annual gross ecosystem productivity reduced by 64% during peak salinization, whereas annual CH4 emissions only reduced by 10%, suggesting that other CH4 substrate sources compensated for reductions in recent photosynthate. Our results demonstrate the value of applying information theory and machine learning approaches to ecological analyses and suggest that drought-induced salinization may increase GHG emissions from estuarine freshwater wetlands. [ABSTRACT FROM AUTHOR]

• Remotely sensed proxies of wetland phenology are sensitive to spatial heterogeneity • Site schedules of remotely sensed greenness resonate with ecosystem productivity • Heterogeneity and spatial resolution affect phenological agreement among sensors • Higher spatial resolution may increase error and complexity in phenological fitting • Satellite-based phenology may elucidate links among canopy structure and function Seasonal phenological dynamics of vegetation hold important clues on ecosystem performance towards management goals, such as carbon uptake, and thus should be considered in projections of their targeted services. However, in wetlands spatio-temporal heterogeneity due to mixing of open water, soil, green and dead vegetation makes it difficult to generalize ecosystem functioning across different regions. Remote sensing observations can provide spatially-explicit, cost-effective phenology indicators; however, little is known about their capacity to indicate the links between wetland ecosystem structure and function. Here we assessed this potential by comparing one-year Enhanced Vegetation Index (EVI) from satellite products at high (5m; RapidEye) and low (30m; Landsat) spatial resolutions with eddy covariance time series of net carbon exchange, field digital camera (phenocam) greenness and water temperature among three floristically similar restored wetlands in California, USA. Phenological timing differed by wetland site: depending on satellite, the range in site-median start of greening was up to 28 days, end of greening – up to 73 days, start of senescence – up to 79 days, and end of senescence – up to 10 days. Key transition dates from satellite inputs agreed with seasonal changes in net carbon exchange, phenocam greenness and water temperatures, suggesting that phenological contrasts could result in part from site differences in vegetation configuration and litter affecting the exposure of canopy, soil and water to sunlight and thus sub-canopy microclimate and ecosystem functioning. Yet, the agreement between satellite inputs was non-systematic, with the greatest disparities at the more heterogeneous, less vegetated site. Phenological model fitting uncertainty increased with greater spatial resolution, highlighting the tradeoff between the accuracy of representing vegetation and the complexity of local seasonal variation. These findings highlight the sensitivity of satellite-derived phenology to structural and functional heterogeneity of ecosystems and call for more rigorous spatially-explicit analyses to inform assessments of restoration and management outcomes. [ABSTRACT FROM AUTHOR]

Inundated wetlands can potentially sequester substantial amounts of soil carbon (C) over the long-term because of slow decomposition and high primary productivity, particularly in climates with long growing seasons. Restoring such wetlands may provide one of several effective negative emission technologies to remove atmospheric CO2 and mitigate climate change. However, there remains considerable uncertainty whether these heterogeneous ecotones are consistent net C sinks and to what degree restoration and management methods affect C sequestration. Since wetland C dynamics are largely driven by climate, it is difficult to draw comparisons across regions. With many restored wetlands having different functional outcomes, we need to better understand the importance of site-specific conditions and how they change over time. We report on 21 site-years of C fluxes using eddy covariance measurements from five restored fresh to brackish wetlands in a Mediterranean climate. The wetlands ranged from 3 to 23 years after restoration and showed that several factors related to restoration methods and site conditions altered the magnitude of C sequestration by affecting vegetation cover and structure. Vegetation established within two years of re-flooding but followed different trajectories depending on design aspects, such as bathymetry-determined water levels, planting methods, and soil nutrients. A minimum of 55% vegetation cover was needed to become a net C sink, which most wetlands achieved once vegetation was established. Established wetlands had a high C sequestration efficiency (i.e. the ratio of net to gross ecosystem productivity) comparable to upland ecosystems but varied between years undergoing boom-bust growth cycles and C uptake strength was susceptible to disturbance events. We highlight the large C sequestration potential of productive inundated marshes, aided by restoration design and management targeted to maximise vegetation extent and minimise disturbance. These findings have important implications for wetland restoration, policy, and management practitioners., Competing Interests: The authors declare no competing interest.

Wetlands are the largest source of methane (CH 4 ) globally, yet our understanding of how process-level controls scale to ecosystem fluxes remains limited. It is particularly uncertain how variable soil properties influence ecosystem CH 4 emissions on annual time scales. We measured ecosystem carbon dioxide (CO 2 ) and CH 4 fluxes by eddy covariance from two wetlands recently restored on peat and alluvium soils within the Sacramento-San Joaquin Delta of California. Annual CH 4 fluxes from the alluvium wetland were significantly lower than the peat site for multiple years following restoration, but these differences were not explained by variation in dominant climate drivers or productivity across wetlands. Soil iron (Fe) concentrations were significantly higher in alluvium soils, and alluvium CH 4 fluxes were decoupled from plant processes compared with the peat site, as expected when Fe reduction inhibits CH 4 production in the rhizosphere. Soil carbon content and CO 2 uptake rates did not vary across wetlands and, thus, could also be ruled out as drivers of initial CH 4 flux differences. Differences in wetland CH 4 fluxes across soil types were transient; alluvium wetland fluxes were similar to peat wetland fluxes 3 years after restoration. Changing alluvium CH 4 emissions with time could not be explained by an empirical model based on dominant CH 4 flux biophysical drivers, suggesting that other factors, not measured by our eddy covariance towers, were responsible for these changes. Recently accreted alluvium soils were less acidic and contained more reduced Fe compared with the pre-restoration parent soils, suggesting that CH 4 emissions increased as conditions became more favorable to methanogenesis within wetland sediments. This study suggests that alluvium soil properties, likely Fe content, are capable of inhibiting ecosystem-scale wetland CH 4 flux, but these effects appear to be transient without continued input of alluvium to wetland sediments., (© 2018 John Wiley & Sons Ltd.)