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Evapotranspiration (ET), a key component of crop water balance, is essential for growers to manage agricultural irrigation. METRIC model is increasingly used to estimate and map ET with satellite observations, especially at daily and field scales. However, the analysis of its uncertainties on tree crop ET estimation is very limited. We used METRIC model to estimate daily ET over the almond and pistachio orchards throughout the entire growing season in the San Joaquin Valley, California, and evaluated the impacts of variations in meteorological variables, land surface parameters and different study sizes on ET estimation. The results showed that the METRIC-based daily ET estimates of the almond and pistachio trees were most sensitive to net radiation (Rn), followed by instantaneous reference ET (ETo), land surface temperature (LST), and near-surface temperature difference (dT). When a 5% error was added to Rn, the uncertainty in daily ET estimates was up to 8.44 ± 1.24%, corresponding to a mean increase of 0.45 ± 0.02 mm/day throughout the entire growing season. A 5% or 0.5 K error in instantaneous ETo, LST, and dT also caused changes in daily ET estimates by 4.15 ± 3.75%, 2.97 ± 0.14%, and 2.31 ± 1.20%, respectively. ET estimates with METRIC were relatively much less sensitive to other variables. The results from different study sizes indicated that daily ET estimates in Size-2 were 0.33 ± 0.08 mm/day overestimation compared with those from Size-1 in the almond site. Similarly, a mean overestimation of 0.30 ± 0.14 mm/day was found between Size-1 and Size-3 in the pistachio sites throughout the entire growing season. This study demonstrates the potential to further improve the accuracy of remote sensing based ET estimation for complex tree crops with METRIC model, by optimizing key parameters and choosing a proper domain size for study area. • Daily evapotranspiration of tree crops was estimated by METRIC model. • The impacts of variation in meteorological variables on METRIC-based ET were evaluated throughout the entire growing seasons. • The impacts of variation in land surface parameters on METRIC-based ET were assessed throughout the entire growing seasons. • The impact of varying study sizes on METRIC-based ET estimates was tested. [ABSTRACT FROM AUTHOR]