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Alfalfa is the most widely grown forage crop worldwide and is thought to be a significant carbon sink due to high productivity, extensive root systems, and nitrogen-fixation. However, these conditions may increase nitrous oxide (N2O) emissions thus lowering the climate change mitigation potential. We used a suite of long-term automated instrumentation and satellite imagery to quantify patterns and drivers of greenhouse gas fluxes in a continuous alfalfa agroecosystem in California. We show that this continuous alfalfa system was a large N2O source (624 ± 28 mg N2O m2 y−1), offsetting the ecosystem carbon (carbon dioxide (CO2) and methane (CH4)) sink by up to 14% annually. Short-term N2O emissions events (i.e., hot moments) accounted for ≤1% of measurements but up to 57% of annual emissions. Seasonal and daily trends in rainfall and irrigation were the primary drivers of hot moments of N2O emissions. Significant coherence between satellite-derived photosynthetic activity and N2O fluxes suggested plant activity was an important driver of background emissions. Combined data show annual N2O emissions can significantly lower the carbon-sink potential of continuous alfalfa agriculture. Long-term continuous greenhouse gas measurements in alfalfa cropland showed that the magnitude of the carbon sink was significantly offset by large nitrous oxide (N2O) emission events following irrigation and rainfall. [ABSTRACT FROM AUTHOR]

We test the relationship between canopy photosynthesis and reflected near‐infrared radiation from vegetation across a range of functional (photosynthetic pathway and capacity) and structural conditions (leaf area index, fraction of green and dead leaves, canopy height, reproductive stage, and leaf angle inclination), weather conditions, and years using a network of field sites from across central California. We based our analysis on direct measurements of canopy photosynthesis, with eddy covariance, and measurements of reflected near‐infrared and red radiation from vegetation, with light‐emitting diode sensors. And we interpreted the observed relationships between photosynthesis and reflected near‐infrared radiation using simulations based on the multilayer, biophysical model, CanVeg. Measurements of reflected near‐infrared radiation were highly correlated with measurements of canopy photosynthesis on half‐hourly, daily, seasonal, annual, and decadal time scales across the wide range of function and structure and weather conditions. Slopes of the regression between canopy photosynthesis and reflected near‐infrared radiation were greatest for the fertilized and irrigated C4 corn crop, intermediate for the C3 tules on nutrient‐rich organic soil and nitrogen fixing alfalfa, and least for the native annual grasslands and oak savanna on nutrient‐poor, mineral soils. Reflected near‐infrared radiation from vegetation has several advantages over other remotely sensed vegetation indices that are used to infer canopy photosynthesis; it does not saturate at high leaf area indices, it is insensitive to the presence of dead legacy vegetation, the sensors are inexpensive, and the reflectance signal is strong. Hence, information on reflected near‐infrared radiation from vegetation may have utility in monitoring carbon assimilation in carbon sequestration projects or on microsatellites orbiting Earth for precision agriculture applications. Key Points: Reflected near‐infrared radiation is a strong proxy for canopy photosynthesisThis proxy works for a wide range of ecosystem structure and functionThe method has promise to be used for a variety of applications relating to carbon and water use [ABSTRACT FROM AUTHOR]

Salinity gradients across estuaries influence wetland carbon storage, methane (CH4) biogeochemistry, and plant productivity. Estuarine freshwater wetlands may experience increases in salinity during drought; however, the impact of salinization on greenhouse gas (GHG) emissions is uncertain. We measured ecosystem-scale GHG emissions from a wetland experiencing salinization during the 2011–2017 California drought and used information theory analyses to quantify couplings and causal interactions between CH4 fluxes and two dominant environmental drivers; gross ecosystem photosynthesis and temperature. Machine learning models were then used to estimate salinization-induced changes in CH4 fluxes and plant productivity. We observed dynamic CH4 flux-driver relationships across the salinization disturbance event, where temperature connections strengthened, and productivity connections dampened during salinization. Annual gross ecosystem productivity reduced by 64% during peak salinization, whereas annual CH4 emissions only reduced by 10%, suggesting that other CH4 substrate sources compensated for reductions in recent photosynthate. Our results demonstrate the value of applying information theory and machine learning approaches to ecological analyses and suggest that drought-induced salinization may increase GHG emissions from estuarine freshwater wetlands. [ABSTRACT FROM AUTHOR]

• Generated CubeSats derived NIRvP maps at daily, 3 m resolution. • Matching NIRvP maps to flux tower footprint improved the NIRvP-GPP relationship. • The effects of matching the footprints were largest for wetland sites. Mapping canopy photosynthesis in both high spatial and temporal resolution is essential for carbon cycle monitoring in heterogeneous areas. However, well established satellites in sun-synchronous orbits such as Sentinel-2, Landsat and MODIS can only provide either high spatial or high temporal resolution but not both. Recently established CubeSat satellite constellations have created an opportunity to overcome this resolution trade-off. In particular, Planet Fusion allows full utilization of the CubeSat data resolution and coverage while maintaining high radiometric quality. In this study, we used the Planet Fusion surface reflectance product to calculate daily, 3-m resolution, gap-free maps of the near-infrared radiation reflected from vegetation (NIRvP). We then evaluated the performance of these NIRvP maps for estimating canopy photosynthesis by comparing with data from a flux tower network in Sacramento-San Joaquin Delta, California, USA. Overall, NIRvP maps captured temporal variations in canopy photosynthesis of individual sites, despite changes in water extent in the wetlands and frequent mowing in the crop fields. When combining data from all sites, however, we found that robust agreement between NIRvP maps and canopy photosynthesis could only be achieved when matching NIRvP maps to the flux tower footprints. In this case of matched footprints, NIRvP maps showed considerably better performance than in situ NIRvP in estimating canopy photosynthesis both for daily sum and data around the time of satellite overpass (R2 = 0.78 vs. 0.60, for maps vs. in situ for the satellite overpass time case). This difference in performance was mostly due to the higher degree of consistency in slopes of NIRvP-canopy photosynthesis relationships across the study sites for flux tower footprint-matched maps. Our results show the importance of matching satellite observations to the flux tower footprint and demonstrate the potential of CubeSat constellation imagery to monitor canopy photosynthesis remotely at high spatio-temporal resolution. [Display omitted] [ABSTRACT FROM AUTHOR]

Inundated wetlands can potentially sequester substantial amounts of soil carbon (C) over the long-term because of slow decomposition and high primary productivity, particularly in climates with long growing seasons. Restoring such wetlands may provide one of several effective negative emission technologies to remove atmospheric CO2 and mitigate climate change. However, there remains considerable uncertainty whether these heterogeneous ecotones are consistent net C sinks and to what degree restoration and management methods affect C sequestration. Since wetland C dynamics are largely driven by climate, it is difficult to draw comparisons across regions. With many restored wetlands having different functional outcomes, we need to better understand the importance of site-specific conditions and how they change over time. We report on 21 site-years of C fluxes using eddy covariance measurements from five restored fresh to brackish wetlands in a Mediterranean climate. The wetlands ranged from 3 to 23 years after restoration and showed that several factors related to restoration methods and site conditions altered the magnitude of C sequestration by affecting vegetation cover and structure. Vegetation established within two years of re-flooding but followed different trajectories depending on design aspects, such as bathymetry-determined water levels, planting methods, and soil nutrients. A minimum of 55% vegetation cover was needed to become a net C sink, which most wetlands achieved once vegetation was established. Established wetlands had a high C sequestration efficiency (i.e. the ratio of net to gross ecosystem productivity) comparable to upland ecosystems but varied between years undergoing boom-bust growth cycles and C uptake strength was susceptible to disturbance events. We highlight the large C sequestration potential of productive inundated marshes, aided by restoration design and management targeted to maximise vegetation extent and minimise disturbance. These findings have important implications for wetland restoration, policy, and management practitioners., Competing Interests: The authors declare no competing interest.

Wetlands are the largest source of methane (CH 4 ) globally, yet our understanding of how process-level controls scale to ecosystem fluxes remains limited. It is particularly uncertain how variable soil properties influence ecosystem CH 4 emissions on annual time scales. We measured ecosystem carbon dioxide (CO 2 ) and CH 4 fluxes by eddy covariance from two wetlands recently restored on peat and alluvium soils within the Sacramento-San Joaquin Delta of California. Annual CH 4 fluxes from the alluvium wetland were significantly lower than the peat site for multiple years following restoration, but these differences were not explained by variation in dominant climate drivers or productivity across wetlands. Soil iron (Fe) concentrations were significantly higher in alluvium soils, and alluvium CH 4 fluxes were decoupled from plant processes compared with the peat site, as expected when Fe reduction inhibits CH 4 production in the rhizosphere. Soil carbon content and CO 2 uptake rates did not vary across wetlands and, thus, could also be ruled out as drivers of initial CH 4 flux differences. Differences in wetland CH 4 fluxes across soil types were transient; alluvium wetland fluxes were similar to peat wetland fluxes 3 years after restoration. Changing alluvium CH 4 emissions with time could not be explained by an empirical model based on dominant CH 4 flux biophysical drivers, suggesting that other factors, not measured by our eddy covariance towers, were responsible for these changes. Recently accreted alluvium soils were less acidic and contained more reduced Fe compared with the pre-restoration parent soils, suggesting that CH 4 emissions increased as conditions became more favorable to methanogenesis within wetland sediments. This study suggests that alluvium soil properties, likely Fe content, are capable of inhibiting ecosystem-scale wetland CH 4 flux, but these effects appear to be transient without continued input of alluvium to wetland sediments., (© 2018 John Wiley & Sons Ltd.)