1. Hiding in plain sight: discovery and phylogeography of a cryptic species of Trichinella (Nematoda: Trichinellidae) in wolverine (Gulo gulo).
- Author
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Sharma R, Thompson PC, Hoberg EP, Brad Scandrett W, Konecsni K, Harms NJ, Kukka PM, Jung TS, Elkin B, Mulders R, Larter NC, Branigan M, Pongracz J, Wagner B, Kafle P, Lobanov VA, Rosenthal BM, and Jenkins EJ
- Subjects
- Alaska, Animals, Canada, DNA, Helminth genetics, DNA, Ribosomal genetics, Genome, Mitochondrial genetics, Life Cycle Stages, Phylogeny, Phylogeography, Polymerase Chain Reaction methods, Polymerase Chain Reaction veterinary, Siberia, Trichinella spiralis anatomy & histology, Trichinella spiralis classification, Trichinella spiralis genetics, Trichinella spiralis isolation & purification, Trichinellosis parasitology, Trichinellosis veterinary, Mustelidae parasitology, Trichinella anatomy & histology, Trichinella classification, Trichinella genetics, Trichinella isolation & purification
- Abstract
Understanding parasite diversity and distribution is essential in managing the potential impact of parasitic diseases in animals and people. Imperfect diagnostic methods, however, may conceal cryptic species. Here, we report the discovery and phylogeography of a previously unrecognized species of Trichinella in wolverine (Gulo gulo) from northwestern Canada that was indistinguishable from T. nativa using the standard multiplex PCR assay based on the expansion segment 5 (ESV) of ribosomal DNA. The novel genotype, designated as T13, was discovered when sequencing the mitochondrial genome. Phylogenetic analyses of the mitochondrial genome and of 15 concatenated single copy orthologs of nuclear DNA indicated a common ancestor for the encapsulated clade is shared by a subclade containing Trichinella spiralis and Trichinella nelsoni, and a subclade containing T13 and remaining taxa: T12 + (T2 + T6) + [(T5 + T9) + (T3 + T8)]. Of 95 individual hosts from 12 species of mammalian carnivores from northwestern Canada from which larvae were identified as T. nativa on multiplex PCR, only wolverines were infected with T13 (14 of 42 individuals). These infections were single or mixed with T. nativa and/or T6. Visual examination and motility testing confirmed that T13 is encapsulated and likely freeze-tolerant. We developed a new Polymerase Chain Reaction-Restriction Fragment Length Polymorphism which unequivocally distinguishes between T13 and T. nativa. We propose Trichinella chanchalensis n. sp. for T13, based on significant genetic divergence from other species of Trichinella and broad-based sampling of the Trichinella genome. Exploration of Alaskan and Siberian isolates may contribute to further resolution of a phylogeographically complex history for species of Trichinella across Beringia, including Trichinella chanchalensis n. sp. (T13)., (Published by Elsevier Ltd.)
- Published
- 2020
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