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Recent genetic data indicate that the eastern wolf is not a subspecies of the gray wolf (Canis lupus), but is a North American wolf more similar to the red wolf (C. rufus) and closely related to the coyote (C. latrans). The eastern wolf has been proposed as a separate species, C. lycaon. The largest protected area containing this wolf is Algonquin Provincial Park in Ontario, Canada, which is bounded to the south by areas containing the Tweed wolf or eastern coyote, a hybrid of the western coyote and eastern wolf. We assessed the relationships of animals in the park by using DNA profiles that comprised the genotype from 17 autosomal and 4 Y-linked microsatellite loci and the mitochondrial DNA control region. These profiles were used to establish maternity, paternity, and kin relationships for 102 wolves that were studied from 24 packs over a 12-year period. Genetic data do not support the hypothesis that a pack comprises an unrelated breeding pair and their offspring. There is evidence of frequent pack splitting, pack fusion, and adoption. Some unrelated individuals in the packs were identified as immigrants into the park. We found high levels of genetic structuring between the Tweed wolves to the southeast and the Algonquin Park wolves (RST = 0.114). Lower levels of genetic differentiation with animals to the north and west (RST = 0.057 and RST = 0.036) and high genetic diversity suggest that park animals are not an island population but the southern part of a larger metapopulation of C. lycaon. [ABSTRACT FROM AUTHOR]

To gain insight into the incursion of the raccoon variant of rabies into the raccoon population in three Canadian provinces, a collection of 192 isolates of the raccoon rabies virus (RRV) strain was acquired from across its North American range and was genetically characterized. A 516-nucleotide segment of the non-coding region between the G and L protein open reading frames, corresponding to the most variable region of the rabies virus genome, was sequenced. This analysis identified 119 different sequences, and phylogenetic analysis of the dataset supports the documented history of RRV spread. Three distinct geographically restricted RRV lineages were identified. Lineage 1 was found in Florida, Alabama and Georgia and appears to form the ancestral lineage of the raccoon variant of rabies. Lineage 2, represented by just two isolates, was found only in Florida, while the third lineage appears broadly distributed throughout the rest of the eastern United States and eastern Canada. In New York State, two distinct spatially segregated variants were identified; the one occupying the western and northern portions of the state was responsible for an incursion of raccoon rabies into the Canadian province of Ontario. Isolates from New Brunswick and Quebec form distinct, separate clusters, consistent with their independent origins from neighboring areas of the United States. The data are consistent with localized northward incursion into these three separate areas with no evidence of east-west viral movement between the three Canadian provinces., (Copyright © 2011 Elsevier B.V. All rights reserved.)

A landscape genetic simulation modelling approach is used to understand factors affecting raccoon rabies disease spread in southern Ontario, Canada. Using the Ontario Rabies Model, we test the hypothesis that landscape configuration (shape of available habitat) affects dispersal, as indicated by genetic structuring. We simulated range expansions of raccoons from New York into vacant landscapes in Ontario, in two areas that differed by the presence or absence of a landscape constriction. Our results provide theoretical evidence that landscape constriction acts as a vicariant bottleneck. We discuss implications for raccoon rabies spread.

The entire genome of a mid-Atlantic raccoon strain rabies virus (RRV) isolated in Canada was sequenced; this is the second North American wildlife rabies virus isolate to be fully characterized. The overall organization and length of the genome was similar to that of other lyssaviruses. The nucleotide sequence identity of the raccoon strain ranged between 32.7% and 85.0% when compared to other lyssaviruses, while the deduced amino acid sequence identity ranged between 22.9% and 94.2% with the nucleoprotein and polymerase being the most conserved. Notable features of RRV include the phosphoprotein's four amino acid extension compared to most other rabies viruses, and a nucleotide substitution immediately prior to the normal start codon that results in an additional methionine at the beginning of the L protein. This is the first report of the RRV L gene sequence and its 2128 amino acid product. Rates of non-synonymous and synonymous nucleotide changes within the lyssavirus L gene identified the conserved blocks II, III and IV as being most constrained. Analysis of L gene codon substitution patterns favoured models that supported positive selection, but only one site, corresponding to Leu62 of the RRV L protein, was identified as being under weak positive selection.