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Central Asia, especially the Tian‐Shan and Pamir‐Alay, is a biodiversity hotspot for Hedysarum (Fabaceae) with a high number of endemic species. However, to date, studies of the genus Hedysarum based on molecular data have included only a few species distributed in this region. To fill this gap, we analysed 110 Hedysarum species, 36 of which were from the Tian‐Shan and Pamir‐Alay Mountains of Central Asia. We performed phylogenetic analyses, divergence time estimates, and biogeographic analyses using both the internal transcribed spacers of nuclear ribosomal DNA (nrDNA ITS) and three plastid DNA (cpDNA) sequences (trnL‐trnF, matK, psbA‐trnH). Our phylogenetic analysis grouped the species of Hedysarum into three sections: H. sect. Hedysarum, sect. Multicaulia, and sect. Stracheya, which are largely consistent with previous phylogenetic classifications. Accordingly, most of the Central Asian species we studied (28 spp.) were placed in H. subsect. Crinifera within H. sect. Multicaulia. Our divergence time and biogeographic analyses indicate that Hedysarum likely originated in West Asia and/or East Asia during the Early Miocene or Middle Miocene and subsequently dispersed to adjacent areas of Eurasia, as well as North America via the Bering Land Bridge. The likely area of origin for H. sect. Multicaulia is West Asia, while East Asia appears to be the center of origin for H. sect. Hedysarum and sect. Stracheya. In addition, we suggest that the rapid radiation of the species of H. subsect. Crinifera occurred in the Tian‐Shan and Pamir‐Alay Mountains, as well as the Turkish‐Iranian Plateau, and that geological and climatic changes were the main causes of speciation in Hedysarum. [ABSTRACT FROM AUTHOR]

Background and Aims Macro- and micromorphology of seeds are diagnostic characteristics of importance in delimiting taxa in Allium (Amaryllidaceae). However, there is no consensus on the phylogenetic significance of testa cell characteristics and whether they reflect the different evolutionary levels recognized in Allium. Methods Seeds of 95 species (98 samples) representing 14 subgenera and 58 sections of Allium were examined using scanning electron microscopy (SEM) for such traits as periclinal wall surface area of ten testa cells, distance between testa cells (macromorphology), testa cell shapes, and arrangement and structure of anticlinal and periclinal walls (micromorphology). The data matrix was subjected to cladistic analysis. The produced phylogenetic tree was examined against the molecular tree obtained from publically available ITS sequences. Key Results The periclinal wall surface area of ten testa cells and the distance between them, examined for the first time, were found useful for delimitation of species in Allium. Based on seed macro- and micromorphology, we present a taxonomic key and a hypothetical reconstruction of the migration routes during the early stages of evolution of Allium. Conclusions The ancestors of Allium originated in an area bounded by the Caucasus, Central Asia and Iran. The seed testa morphology-based evolutionary state of a species is determined by two parameters: the shape of the periclinal walls and curvature of the anticlinal walls. [ABSTRACT FROM AUTHOR]

Cushion plants exhibiting adaptive convergence in cold and dry environments are keystone and foundation species in the alpine/subnival habitat on the Qinghai‐Tibet Plateau (QTP). To date, little attention has been paid to the molecular phylogeny, origin, and biogeography of cushion plants on the QTP. We investigated the molecular phylogeny of classic cushion Arenaria subg. Dolophragma, A. subg. Eremogoneastrum, and Thylacospermum on the QTP, within the framework of the Caryophyllaceae. A new Thylacospermum‐Dolophragma clade was identified using combined plastid markers (rps16, matK, trnL‐trnF, trnS‐trnfM) and nuclear ribosomal DNA. Molecular divergence dating suggested that Thylacospermum and A. subg. Dolophragma originated in the middle to late Miocene (11.68 Ma). Combined with ancestral range reconstruction, there is an indication that all species of cushion Arenaria (A. subg. Dolophragma, A. subg. Eremogoneastrum) originated during/after the late Pliocene, and the QTP was their ancestral area. Furthermore, ecological niche modeling showed that the areas occupied by the three studied cushion plants during the last glacial maximum (LGM) was broader than that of their present distribution, implying a reduction in their range after the LGM. This evidence clearly illustrates that multistage uplift of the QTP and bordering mountains since the Miocene associated with climatic change (worldwide cooling, aridification in Central Asia, Quaternary glaciation) played a role in triggering and facilitating the speciation and/or evolutionary radiations of the species studied. [ABSTRACT FROM AUTHOR]

• Euclidieae was monophyletic and could be divided into five clades. • Early Miocene origin and subsequent diversification of Euclidieae. • Multiple ndh genes loss and pseudogenization in Euclidieae species. Euclidieae, a morphologically diverse tribe in the family Brassicaceae (Cruciferae), consists of 29 genera and more than 150 species distributed mainly in Asia. Prior phylogenetic analyses on Euclidieae are inadequate. In this study, sequence data from the plastid genome and nuclear ribosomal DNA of 72 species in 27 genera of Euclidieae were used to infer the inter- and intra-generic relationships within. The well-resolved and strongly supported plastome phylogenies revealed that Euclidieae could be divided into five clades. Both Cymatocarpus and Neotorularia are polyphyletic in nuclear and plastome phylogenies. Besides, the conflicts of systematic positions of three species of Braya and two species of Solms-laubachia s.l. indicated that hybridization and or introgression might have happened during the evolutionary history of the tribe. Results from divergence-time analyses suggested an early Miocene origin of Euclidieae, and it probably originated from the Central Asia, Pamir Plateau and West Himalaya. In addition, multiple ndh genes loss and pseudogenization were detected in eight species based on comparative genomic study. [ABSTRACT FROM AUTHOR]