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Objective To investigate the correlation between clinical symptoms and imaging features with quality of life in patients after endoscopic transnasal or transoral approach for resection of skull base chordoma. Methods The clinical and imaging data of 14 patients with skull base chordoma who underwent endoscopic transnasal or transoral approach for resection in Tianjin Huanhu Hospital from March 2016 to March 2022 were retrospectively analysed. Quality of life after endoscopic skull base chordoma resection was measured by 36-Item Short-Form Health Survey (SF-36). The correlation between clinical symptoms and imaging features with SF-36 was investigated using Point-Biserial correlation and partial correlation analyses. Results Correlation analyses indicated that headache (r = - 0.998, P = 0.043), diplopia (r = - 0.999, P = 0.032), visual disturbance (r = - 0.998, P = 0.037), sinus symptoms (r = - 0.997, P = 0.047), subtotal or most partial removal (r = - 0.998, P = 0.038) were negatively correlated with body pain in SF-36, while postoperative radiotherapy (r = 0.998, P = 0.038), total clival tumor (r = 0.998, P = 0.036) and tumor volume > 20 cm³ (r = 0.999, P = 0.035) were positively correlated with body pain in SF - 36. Conclusions Patients with skull base chordoma who have headache, diplopia, visual disturbance, sinus symptoms, and subtotal or most partial removal possibly have reduced quality of life after endoscopic resection. The patients with the clinical symptoms and imaging features above deserve more attention. [ABSTRACT FROM AUTHOR]

Soil invertebrates contribute significantly to vital ecosystem functions such as the breakdown of organic matter and cycling of essential nutrients, but our knowledge of their large-scale distribution in agricultural systems is limited, which hinders our ability to robustly predict how they will respond to future global change scenarios. Here, we employed metabarcoding analysis of eukaryotic 18S rRNA genes to examine the diversity and community composition of invertebrates in 528 sorghum rhizosphere and bulk soils, collected from 53 experimental field sites across China. Our results revealed that Nematoda, Arthropoda and Annelida were the dominant soil invertebrate groups in agroecosystems. Among all the climatic and soil parameters we examined, precipitation seasonality (i.e. the irregular distribution of precipitation during a normal year) had the strongest relationship with the richness of soil invertebrates, with an increase in soil invertebrate richness predicted with increasing precipitation seasonality. Mean annual precipitation and soil pH were the most important predictors of soil invertebrate community structure, with numerous invertebrate phylotypes showing either significantly positive or negative relationships with these two variables. Our findings suggest that shifts in precipitation patterns and soil pH, induced by future climate change and agricultural practices, will have important consequences for the distribution of soil invertebrate communities, with implications for agricultural ecosystem sustainability. [ABSTRACT FROM AUTHOR]

Purpose: Nitrogen (N) and phosphorus (P) amendments considerably influence fungal diversity and community composition in various ecosystems. Nevertheless, how N and P additions would change arbuscular mycorrhizal (AM) fungal community and functional guilds in forest soil remains largely unclear. Materials and methods: A 5-year N and P addition experiment was conducted in a subtropical forest of southeastern China. Soil AM fungal communities were detected by the high throughput sequencing of 18S rRNA gene-fragments. We investigated the six-seasonal responses of AM fungal diversity, community assembly pattern and functional guild composition to N and/or P amendments. Results and discussion: The AM fungal Shannon index changed from a positive (3–4 years) to a nonsignificant (4–5 years) effect under P and NP additions as the duration of fertilization increased. P addition, but not N addition, changed the AM fungal community assembly pattern from stochastic- to deterministic-dominant processes. In contrast, P and NP additions significantly influenced AM fungal functional guild components, and the relative abundances of ancestral and edaphophilic guilds increased with increasing years of fertilization. Additionally, the AM fungal guild structure was significantly affected by soil P-related parameters. Conclusions: Our results emphasize the substantial impacts of P amendment on soil AM community assembly pattern and functional guild composition. This study contributes to a better understanding of the temporal dynamics and potential ecological functioning of AM fungi under global environmental changes. [ABSTRACT FROM AUTHOR]

Primary succession of plant and microbial communities in the glacier retreating foreland has been extensively studied, but shifts of antibiotic resistance genes (ARGs) with the glacier retreating due to global warming remain elusive. Unraveling the diversity and succession features of ARGs in pristine soil during glacier retreating could contribute to a mechanistic understanding of the evolution and development of soil resistome. In this study, we quantified the abundance and diversity of ARGs along a 50-year soil development chronosequence by using a high-throughput quantitative PCR (HT-qPCR) technique. A total of 24 ARGs and two mobile genetic elements (MGEs) were detected from all the glacier samples, and the numbers of detected ARGs showed a unimodal pattern with an increasing trend at the early stage (0∼8 years) but no significant change at later stages (17∼50 years). The opr J and mex F genes encoding multidrug resistance were the only two ARGs that were detected across all the succession ages, and the mex F gene showed an increasing trend along the succession time. Structural equation models indicated the predominant role of the intI1 gene encoding the Class 1 integron-integrase in shaping the variation of ARG profiles. These findings suggested the presence of ARGs in pristine soils devoid of anthropogenic impacts, and horizontal gene transfer mediated by MGEs may contribute to the succession patterns of ARGs during the initial soil formation stage along the chronosequence. [ABSTRACT FROM AUTHOR]

Purpose: Despite their symbiotic relationship with trees and the vital role as decomposer in forest, soil fungi received limited attention regarding their changes with altitude in forest ecosystems. This study aimed to determine the diversity patterns of soil fungi along an altitudinal gradient on Mt. Shegyla, a typical forest ecosystem on the Tibetan Plateau. Materials and methods: High-throughput barcoded pyrosequencing and quantitative PCR approaches were employed to measure the community composition, diversity, and abundance patterns of soil fungal 18S ribosomal RNA (rRNA) gene in 20 samples collected along the altitudinal gradient of Mt. Shegyla. Results and discussion: Abundant taxa in the fungal community were Agaricomycetes and Leotiomyceta on Mt. Shegyla. Fungal abundance decreased significantly with increasing altitude. Beta diversity of the fungal community, as measured using weighted UniFrac distance, was significantly related to altitude. Significant correlation was observed between altitude and alpha diversity including richness and phylodiversity, but not with evenness. Network analysis revealed that Ceramothyrium and Clavulina were two important hubs in the community, and an uncultured fungal taxon that previously detected in glacier forefront dominated this network. Distance-based linear model identified soil pH as the dominant driver which significantly related with fungal alpha diversity including richness, phylodiversity, and evenness. However, fungal abundance and the first component of PCoA on weighted UniFrac matrix (beta diversity) did not change significantly with pH. Conclusions: These results provided strong evidence that soil pH was the dominant driver for structuring altitudinal alpha diversity pattern but not beta diversity pattern or community abundance of soil fungi in this typical forest on the Tibetan Plateau. [ABSTRACT FROM AUTHOR]

Unraveling the distribution patterns of plants and animals along the elevational gradients has been attracting growing scientific interests of ecologists, whether the microbial communities exhibit similar elevational patterns, however, remains largely less documented. Here, we investigate the biogeographic distribution of soil archaeal and bacterial communities across three vertical climate zones (3,106-4,479 m.a.s.l.) in Mt. Shegyla on the Tibetan Plateau, by combining quantitative PCR and high-throughput barcoded pyrosequencing approaches. Our results found that the ratio of bacterial to archaeal 16S rRNA gene abundance was negatively related with elevation. Acidobacteria dominated in the bacterial communities, Marine benthic group A dominated in the archaeal communities, and the relative abundance of both taxa changed significantly with elevation. At the taxonomic levels of domain, phylum, and class, more bacterial taxa than archaeal exhibited declining trend in diversity along the increasing elevational gradient, as revealed by Shannon and Faith's phylogenetic diversity indices. Unweighted UniFrac distance clustering showed that the bacterial communities from the mountainous temperate zone clustered together, whereas those from the subalpine cool temperate zone clustered together. However, the partitioning effect of elevational zones on the archaeal community was much weaker compared to that on bacteria. Redundancy analysis revealed that soil geochemical factors explained 58.3 % of the bacterial community variance and 75.4 % of the archaeal community variance. Taken together, we provide evidence that soil bacteria exhibited more apparent elevational zonation feature and decreased diversity pattern than archaea with increasing elevation, and distribution patterns of soil microbes are strongly regulated by soil properties along elevational gradient in this plateau montane ecosystem. [ABSTRACT FROM AUTHOR]

Objectives To clarify the prevalence of loneliness and evaluate the impact of social support, family function and socio-demographic factors on loneliness and their correlation among the rural older people in Anhui, China. Methods A sample of 5652 older people were surveyed using the UCLA (University of California at Los Angeles)-Loneliness Scale, the FAD (family assessment device), and the SSRS (Social Support Rating Scale). Results 78.1% of the older people had moderate to severe levels of loneliness. There was a great difference between loneliness level and subjects' age, marital status and income, family size and education level. Social support and family function were negatively associated with loneliness. Multiple regressions indicated that more social support and better family function offered protection against loneliness. Conclusions The high rate of loneliness among rural older people in Anhui deserves attention. Family function and social support have played an important role in the development and course of loneliness. The strategy and intervention to alleviate loneliness among rural older people should be designed to enhance family function and social support. Copyright © 2011 John Wiley & Sons, Ltd. [ABSTRACT FROM AUTHOR]

Complete ammonia oxidizers (comammox Nitrospira) are ubiquitous in coastal wetland sediments and play an important role in nitrification. Our study examined the impact of habitat modifications on comammox Nitrospira communities in coastal wetland sediments across tropical and subtropical regions of southeastern China. Samples were collected from 21 coastal wetlands in five provinces where native mudflats were invaded by Spartina alterniflora and subsequently converted to aquaculture ponds. The results showed that comammox Nitrospira abundances were mainly influenced by sediment grain size rather than by habitat modifications. Compared to S. alterniflora marshes and native mudflats, aquaculture pond sediments had lower comammox Nitrospira diversity, lower clade A.1 abundance, and higher clade A.2 abundance. Sulfate concentration was the most important factor controlling the diversity of comammox Nitrospira. The response of comammox Nitrospira community to habitat change varied significantly by location, and environmental variables accounted for only 11.2% of the variations in community structure across all sites. In all three habitat types, dispersal limitation largely controlled the comammox Nitrospira community assembly process, indicating the stochastic nature of these sediment communities in coastal wetlands. Comammox Nitrospira have recently gained attention for their potential role in nitrification and nitrous oxide (N2O) emissions in soil and sediment. However, their distribution and assembly in impacted coastal wetland are poorly understood, particularly on a large spatial scale. Our study provides novel evidence that the effects of habitat modification on comammox Nitrospira communities are dependent on the location of the wetland. We also found that the assembly of comammox Nitrospira communities in coastal wetlands was mainly governed by stochastic processes. Nevertheless, sediment grain size and sulfate concentration were identified as key variables affect ing comammox Nitrospira abundance and diversity in coastal sediments. These findings are significant as they advance our understanding of the environmental adaptation of comammox Nitrospira and how future landscape modifications may impact their abundance and diversity in coastal wetlands. [ABSTRACT FROM AUTHOR]

A growing body of evidence highlights the important role of both abundant and rare microorganisms in agroecosystem for their respective ecological functioning. However, the ecological processes that govern the assembly of abundant and rare taxa microbial communities in rice-wheat rotation soils at a regional scale have not yet been elucidated. Here, we conducted a comprehensive investigation of bacterial diversity, community structure, and assembly in samples from 238 sites under rice-wheat rotation in eastern China. Soil pH was the most important edaphic factor shaping bacterial diversity and community structure. The Shannon diversity of both abundant and rare bacterial taxa had a parabolic relationship with soil pH, with diversity reaching its peak at pH values of 7.50 and 7.31, respectively. Abundant bacteria displayed greater sensitivity to soil pH than rare taxa. Stochastic processes, especially dispersal limitation, predominantly governed assembly for both abundant and rare bacteria, explaining 80% of observed variation. Remarkably, stochastic processes contributed >90% of variation in the assembly of rare taxa communities, surpassing its importance in abundant taxa community assembly. Moreover, the assembly of specific bacterial phyla was predominantly governed by stochastic processes in the rice-wheat rotation soils. Overall, our findings provide the first data that although soil pH can make an initial assessment of the variation of bacterial communities, the high level of stochasticity in rare taxa community assembly would make them highly unpredictable during agricultural managements in rice-wheat rotation soils. These findings contribute new perspectives to understanding the main processes underpinning the observed bacterial communities, with implications for soil sampling, biodiversity conservation and ecosystem functionality in rice-wheat rotation soils. • A parabolic relationship between bacterial alpha diversity and soil pH was observed. • Abundant bacterial taxa were more sensitive to soil pH than their rare counterparts. • Dispersal limitation predominantly governed the assembly of bacterial communities. • Stochasticity in rare bacterial community assembly was unexpectedly high in tested soils. [ABSTRACT FROM AUTHOR]

[Display omitted] • The diversity of fungal plant pathogens in the phyllosphere was higher than that in the rhizosphere. • Fungal pathogen diversity was significantly and negatively correlated with latitude in both phyllosphere and rhizosphere. • Climatic factors and soil properties were the most important factors influencing fungal pathogen diversity in phyllosphere and rhizosphere, respectively. • The phyllosphere fungal plant pathogen diversity plays a crucial role in sorghum yield. Fungal plant pathogens threaten crop production and sustainable agricultural development. However, the environmental factors driving their diversity and nationwide biogeographic model remain elusive, impacting our capacity to predict their changes under future climate scenarios. Here, we analyzed potential fungal plant pathogens from 563 samples collected from 57 agricultural fields across China. Over 28.0% of fungal taxa in the phyllosphere were identified as potential plant pathogens, compared to 22.3% in the rhizosphere. Dominant fungal plant pathogen groups were Cladosporium (in the phyllosphere) and Fusarium (in the rhizosphere), with higher diversity observed in the phyllosphere than in rhizosphere soil. Deterministic processes played an important role in shaping the potential fungal plant pathogen community assembly in both habitats. Mean annual precipitation and temperature were the most important factor influencing phyllosphere fungal plant pathogen richness. Significantly negative relationships were found between fungal pathogen diversity and sorghum yield. Notably, compared to the rhizosphere, the phyllosphere fungal plant pathogen diversity played a more crucial role in sorghum yield. Together, our work provides novel insights into the factors governing the spatial patterns of fungal plant pathogens in the crop microbiome, and highlights the potential significance of aboveground phyllosphere fungal plant pathogens in crop productivity. [ABSTRACT FROM AUTHOR]

Direct quantitative multi-elemental analysis of kelp was demonstrated with a high irradiance laser ionization time-of-flight mass spectrometer (LI-TOFMS). To eliminate the influence of interfering peaks like peaks of organic fragment ions, the ionization chamber was filled with helium at a low pressure. A certified kelp reference sample was used to check the accuracy of the instrument and establish the linear calibration curve. The detection limits of this method are able to reach μg/g level. It is demonstrated that the intensities of elements are almost linearly proportional to the concentrations of elements in the kelp sample. Three groups of real kelp samples from different sea areas of China was cut into small pieces and analyzed at the same instrumental condition. 18 elements can be determined in 2 min after the sample mounted. The elemental concentration differences of the three samples reflect the possible processing procedure, seawater composition, and coastal environment differences. Unlabelled Image • Solid sampling analysis method without any complex pretreatment. • Rapid multi-elemental quantitative determination of kelp in less than 2 min. • 18 elements were determined, including trace toxic elements like Pb and As. • Low background and no spectral interferences of each element. • A certified reference material has been used to test the method. [ABSTRACT FROM AUTHOR]

Fungi play an important regulating role in terrestrial ecosystem functioning. However, their biogeographic distribution patterns along combined gradients of plant communities and environmental variables across regional spatial scales remain poorly understood. This knowledge gap is particularly pronounced in arid and semi-arid grassland ecosystems, which occupy one third of the terrestrial surface of China. Here, a regional-scale field investigation was conducted to collect soil samples from 290 plots at 52 sites along a 4000 km transect in temperate grasslands of northern China to assess the distribution patterns of fungal communities. The high-throughput Illumina sequencing revealed that soil fungal communities were dominated by Ascomycota, Basidiomycota and Zygomycota across the temperate grasslands. Fungal richness increased with plant species richness and mean annual precipitation (MAP). Bray-Cutis dissimilarities in soil fungal community composition between sites were significantly correlated with plant community composition, geographical distance, and abiotic factors including MAP, mean annual temperature, soil pH, and soil organic carbon. Variation partitioning analysis revealed that variation in fungal community composition was mainly explained by plant community composition, followed by geographical distance and abiotic factors. Structural equation models further highlighted the significant role of plant species richness in determining soil fungal richness. Taken together, these results suggest that the regional-scale distribution pattern of soil fungal communities is predominantly mediated by plant community composition, and also by abiotic factors and geographical distance in arid and semi-arid temperate grasslands. [ABSTRACT FROM AUTHOR]

[Display omitted] • RC model did not increase the abundance of soil resistance and virulence genes. • Soil resistance and virulence genes had more connections with MGEs in RC system. • Some human pathogens were potential hosts of soil resistance and virulence genes. • Stochastic process drove the assembly of soil resistance and virulence genes. • Bacterial community and MGEs primarily affected resistance and virulence genes. Rice-crayfish co-culture (RC) has been widely and rapidly promoted as a sustainable agricultural system in many countries. The accumulation of crayfish residues could enhance soil organic matters; however, impacts of this integrated farming model on the dissemination and pathogenicity of resistance and virulence genes remain poorly understood. Here, we characterized antibiotic resistance genes (ARGs), biocide resistance genes (BRGs), metal resistance genes (MRGs) and virulence factor genes (VFGs) using metagenomic methods in paired RC and rice monoculture (RM) systems across China. The RC model did not increase the abundance of soil ARGs, BRGs, MRGs, or VFGs in comparison to the RM model, but selectively enriched 35 subtypes of these potential resistance and virulence genes. Network analysis revealed that resistance and virulence genes had a higher number of connections with mobile genetic elements (MGEs) in the RC system than that in the RM system, suggesting a higher horizontal transfer potential of these genes. Moreover, the RC model had a higher abundance of human opportunistic pathogens such as Salmonella enterica , Vibrio cholerae , and Shigella dysenteriae which were potential hosts of VFGs such as phoP , fleS , and gspE , suggesting a potential threat to human health. We further unraveled that stochastic process was the main driver of the assembly of resistance and virulence genes in the RC system. The abundance of ARGs and VFGs were primarily associated with microbial community compositions, while the abundance of BRGs and MRGs were mainly associated with that of MGEs. Taken together, our results suggest that the RC model has potential to cause the dissemination and pathogenicity of resistance and virulence genes, which has important implications for the control of soil-borne biological risks and the strategic management of sustainable agriculture. [ABSTRACT FROM AUTHOR]

It is critical to identify the community assembly patterns (i.e. , deterministic or stochastic processes) of soil microbes and the potential driving factors to better predict the belowground biodiversity and functioning in forest ecosystems. Here, a combined approach of neutral model and multivariate analysis was employed to examine the soil bacterial communities in 12 undisturbed forests in China, spanning a wide latitudinal range from 21.6°N to 50.8°N. A clear divergent pattern was found for community composition, indicating that deterministic processes dominated the community assembly of soil bacteria. The α-diversity (richness) nonlinearly changed from tropical to cold temperate zones, with the lowest and highest values detected in subtropical and temperate zones, respectively. Although no latitudinal pattern was observed for β-diversity (community variation), there were clear climate zone patterns. Unlike the minor effects of mean annual precipitation (MAP) and temperature (MAT) on bacterial α-diversity, MAP and MAT were important factors affecting soil bacterial β-diversity. Soil pH was a strong driver of α- and β-diversity, but plant factors had only minor effects. Altogether, this study highlights the unexpected importance of climatic factors in shaping bacterial β-diversity in forest soils. Our findings have implications for future investigations of bacterial community dynamics in forest ecosystems, particularly the responses of community composition to global climate change scenarios across large geographical scales. • Bacterial α-diversity peaked in higher-latitude temperate forest ecosystems. • The observed bacterial β-diversity was greater than the neutral prediction. • Bacterial β-diversity was significantly different among climatic zones. • Apart from soil pH, MAP and MAT were also important drivers of bacterial communities. • Plant factors were not key predictors of soil bacterial community at the broad scale. [ABSTRACT FROM AUTHOR]

Protists, as integral constituents of the plant microbiome, are posited to confer substantial benefits to plant health and performance. Despite their significance, protists have received considerably less attention compared to other constituents of the plant microbiome, such as bacteria and fungi. To investigate the diversity and community structure of protists in sorghum leaves and roots, we employed amplicon sequencing of the eukaryotic 18S rRNA gene in 563 leaf and root samples collected from 57 locations across China. We found significant differences in the diversity and community structure of protists in sorghum leaves and roots. The leaf was taxonomically dominated by Evosea, Cercozoa and Ciliophora, while the root was dominated by Endomyxa, Cercozoa and Oomycota. The functional taxa of protists exhibited notable differences between leaves and roots, with the former being predominantly occupied by consumers and the latter by parasites. The community composition of protists in the leaf was predominantly influenced by mean annual precipitation, whereas soil pH played a more significant role in the root. The present study identified the most abundant and distributed protists in sorghum leaves and roots and elucidated the underlying factors that govern their community structure. The present study offers a novel perspective on the factors that shape plant-associated protist communities and their potential roles in enhancing the functionality of plant ecosystems., (© 2024 The Author(s). Environmental Microbiology Reports published by John Wiley & Sons Ltd.)

Complete ammonia oxidizers (comammox Nitrospira ) are ubiquitous in coastal wetland sediments and play an important role in nitrification. Our study examined the impact of habitat modifications on comammox Nitrospira communities in coastal wetland sediments across tropical and subtropical regions of southeastern China. Samples were collected from 21 coastal wetlands in five provinces where native mudflats were invaded by Spartina alterniflora and subsequently converted to aquaculture ponds. The results showed that comammox Nitrospira abundances were mainly influenced by sediment grain size rather than by habitat modifications. Compared to S. alterniflora marshes and native mudflats, aquaculture pond sediments had lower comammox Nitrospira diversity, lower clade A.1 abundance, and higher clade A.2 abundance. Sulfate concentration was the most important factor controlling the diversity of comammox Nitrospira . The response of comammox Nitrospira community to habitat change varied significantly by location, and environmental variables accounted for only 11.2% of the variations in community structure across all sites. In all three habitat types, dispersal limitation largely controlled the comammox Nitrospira community assembly process, indicating the stochastic nature of these sediment communities in coastal wetlands. IMPORTANCE Comammox Nitrospira have recently gained attention for their potential role in nitrification and nitrous oxide (N 2 O) emissions in soil and sediment. However, their distribution and assembly in impacted coastal wetland are poorly understood, particularly on a large spatial scale. Our study provides novel evidence that the effects of habitat modification on comammox Nitrospira communities are dependent on the location of the wetland. We also found that the assembly of comammox Nitrospira communities in coastal wetlands was mainly governed by stochastic processes. Nevertheless, sediment grain size and sulfate concentration were identified as key variables affecting comammox Nitrospira abundance and diversity in coastal sediments. These findings are significant as they advance our understanding of the environmental adaptation of comammox Nitrospira and how future landscape modifications may impact their abundance and diversity in coastal wetlands., Competing Interests: The authors declare no conflict of interest.

Fungal communities are essential to the maintenance of soil multifunctionality. Plant invasion represents a growing challenge for the conservation of soil biodiversity across the globe, but the impact of non-native species invasion on fungal diversity, community structure, and assembly processes remains largely unknown. Here, we examined the diversity, community composition, functional guilds, and assembly process of fungi at three soil depths underneath a native species, three non-native species, and a bare tidal flat from a coastal wetland. Plant species was more important than soil depth in regulating the diversity, community structure, and functional groups of fungi. Non-native species, especially Spartina alterniflora, increased fungal diversity, altered fungal community structure, and increased the relative abundance of saprotrophic and pathogenic fungi in coastal wetland soils. Stochastic processes played a predominant role in driving fungal community assembly, explaining more than 70% of the relative contributions. However, compared to a native species, non-native species, especially S. alterniflora, reduced the relative influence of stochastic processes in fungal community assembly. Collectively, our results provide novel evidence that non-native species can increase fungal diversity, the relative abundance of saprotrophic and pathogenic fungi, and deterministic processes in the assembly of fungi in coastal wetlands, which can expand our knowledge of the dynamics of fungal communities in subtropical coastal wetlands., (© 2022. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.)

The invasion of Spartina alterniflora poses a serious threat to the sustainability of native ecosystems worldwide. However, compared with other non-native plants (e.g., Phragmites australis and Kandelia obovata), how Spartina alterniflora invasion influences the community structure of bacteria and their assembly processes and functionality remains elusive. Here, we characterized the diversity, community structure, assembly processes and functional guilds of bacteria underneath five plant species and a bare tidal flat at three soil depths in an estuarine wetland. We found that plant species played a more important role than soil depth in mediating the bacterial community structure. Compared with bare tidal flats, the native species Cyperus malaccensis, rather than Scirpus triqueter, significantly changed the bacterial community structure. However, S. alterniflora invasion increased bacterial alpha diversity and significantly altered the bacterial community structure by enriching Chloroflexi, Bacteroidetes and Firmicutes while reducing Acidobacteria, Nitrospirae and Gemmatimonadetes. The invasion of P. australis and translocation of K. obovata had less pronounced effects on the bacterial community structure. Total carbon, total nitrogen and salinity were the key environmental factors mediating the bacterial community structure. Overall of all the non-native plant species, the invasion of S. alterniflora increased the relative importance of stochastic processes in the assembly of bacterial communities, and shifted the bacterial functional profiles by stimulating sulfur cycling groups and suppressing nitrogen cycling groups. Altogether, our results suggest that S. alterniflora invasion has a greater effect than P. australis invasion or K. obovata translocation on the profiles and assembly processes of the bacterial communities, with important implications for soil biogeochemical processes in coastal wetlands., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2022 Elsevier B.V. All rights reserved.)

Heavy metals have been recognized as potential factors driving the evolution and development of antibiotic resistance. However, the relative effects of cadmium (Cd) and arsenic (As) on the prevalence and distribution of antibiotic resistance genes (ARGs) remain unclear. We investigated the co-selection effects of Cd and As on ARGs in 45 paddy soils polluted by heavy metals, using high-throughput quantitative PCR. A total of 119 ARGs and 9 mobile genetic elements (MGEs) were detected in all samples. Regression analysis showed that the single pollution index (PI As and PI Cd ) and Nemerow integrated pollution index (NIPI) both had significant and positive correlations with ARGs (P <  0.05), indicating the co-selective effects of Cd and As on ARGs distribution. The significant correlations between bacterial taxa and different ARGs in network analysis revealed potential hosts of ARGs. Structural equation models indicated that the effects of As on ARGs were stronger than that of Cd. The profile of ARGs could be impacted by Cd and As indirectly by strongly affecting the bacterial abundance. Overall, this study extended our knowledge about the co-selection of Cd and As on ARGs in paddy soil, and had important implications for assessing the potential risks of ARGs in paddy soils., Competing Interests: Declaration of Competing Interest No part of this paper has been published or submitted elsewhere. All authors declare no conflicts of interest., (Copyright © 2019 Elsevier B.V. All rights reserved.)

Soil is a vital reservoir of antibiotic resistance genes (ARGs), but we still know little about their distribution in cropland soils and the main driving forces. Here we performed an investigation for ARGs patterns in 105 cropland soils (planted with maize, peanut or soybean) along a 2, 200 km transect in China using high-throughput quantitative PCR approaches. Totally, 204 ARGs were detected, with a higher diversity found in central China than that in northeast and south China. The most abundant (top 50%) and highly shared (present in >50% samples) ARGs regarded as core resistome were dominated by multidrug resistance genes such as oprJ, acrA-05 and acrA-04. Regressive analyses revealed that the relative abundance of total ARGs and core resistome both had significant relationships with mobile genetic elements (MGEs). Anthropogenic factors including the consumption of plastic films and soil properties including heavy metals showed good correlations with the diversity of ARGs. Structural equation modelling analysis further explained that anthropogenic factors were the main forces shaping the ARGs patterns. These findings highlight the importance of human activities in shaping soil antibiotic resistome in the croplands, providing potential management strategies to mitigate the dissemination of ARGs to humans via food chain., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2020 Elsevier B.V. All rights reserved.)

Rice consumption is now recognized as an important pathway of human exposure to the neurotoxin methylmercury (MeHg), particularly in countries where rice is a staple food. Although the discovery of a two-gene cluster hgcAB has linked Hg methylation to several phylogenetically diverse groups of anaerobic microorganisms converting inorganic mercury (Hg) to MeHg, the prevalence and diversity of Hg methylators in microbial communities of rice paddy soils remain unclear. We characterized the abundance and distribution of hgcAB genes using third-generation PacBio long-read sequencing and Illumina short-read metagenomic sequencing, in combination with quantitative PCR analyses in several mine-impacted paddy soils from southwest China. Both Illumina and PacBio sequencing analyses revealed that Hg methylating communities were dominated by iron-reducing bacteria (i.e., Geobacter) and methanogens, with a relatively low abundance of hgcA + sulfate-reducing bacteria in the soil. A positive correlation was observed between the MeHg content in soil and the relative abundance of Geobacter carrying the hgcA gene. Phylogenetic analysis also uncovered some hgcAB sequences closely related to three novel Hg methylators, Geobacter anodireducens, Desulfuromonas sp. DDH964, and Desulfovibrio sp. J2, among which G. anodireducens was validated for its ability to methylate Hg. These findings shed new light on microbial community composition and major clades likely driving Hg methylation in rice paddy soils.

As an important part of modern analytical techniques, atomic spectrometry occupies a decisive status in the whole analytical field. The development of atomic spectrometry also reflects the continuous reform and innovation of analytical techniques. In the past fifteen years, atomic spectrometry has experienced rapid development and been applied widely in many fields in China. This review has witnessed its development and remarkable achievements. It contains several directions of atomic spectrometry, including atomic emission spectrometry (AES), atomic absorption spectrometry (AAS), atomic fluorescence spectrometry (AFS), X-ray fluorescence spectrometry (XRF), and atomic mass spectrometry (AMS). Emphasis is put on the innovation of the detection methods and their applications in related fields, including environmental samples, biological samples, food and beverage, and geological materials, etc. There is also a brief introduction to the hyphenated techniques utilized in atomic spectrometry. Finally, the prospects of atomic spectrometry in China have been forecasted.

To improve the prediction of essential ecosystem functioning under future environmental disturbances, it is of significance to identify responses of soil microorganisms to environmental stresses. In this study, we collected polluted soil samples from field plots with eight copper levels ranging from 0 to 3,200 mg Cu kg(-1) soil. Then, the soils with 0 and 3,200 mg Cu kg(-1) were selected to construct a microcosm experiment. Four treatments were set up including Cu0-C and Cu3200-C without further Cu addition, and Cu0-A and Cu3200-A with addition of 57.5 mg Cu kg(-1) soil. We measured substrate-induced respiration (SIR) and potential nitrification rate (PNR). Furthermore, the abundance of bacterial, archaeal 16S rRNA genes, ammonia-oxidizing bacteria and archaea amoA genes were determined through quantitative PCR. The soil microbial communities were investigated by terminal restriction fragment length polymorphism (T-RFLP). For the field samples, the SIR and PNR as well as the abundance of soil microorganisms varied significantly between eight copper levels. Soil microbial communities highly differed between the low and high copper stress. In the microcosm experiment, the PNR and SIR both recovered while the abundance of soil microorganisms varied irregularly during the 90-day incubation. The differences of microbial communities measured by pairwise Bray-Curtis dissimilarities between Cu0-A and Cu0-C on day 0 were significantly higher after subsequent stress than before. However, the differences of microbial communities between Cu3200-A and Cu3200-C on day 0 changed little between after subsequent stress and before. Therefore, initial copper stress could increase the resistance of soil microorganisms to subsequent copper stress.

Pasteurella multocida, the causative agent of fowl cholera, is a serious threat to poultry farming. In this study, we isolated and identified 40 P. multocida strains in fowl cholera outbreaks in Jiangsu province, China. The identified P. multocida was further characterized using multi-locus sequence typing (MLST). All of the 40 P. multocida strains studied are genetically identical and belong to the ST129 sequence type based on seven MLST loci. Our study provides evidence of a circulating epidemic strain of P. multocida in Jiangsu, China., (Copyright © 2013. Published by Elsevier B.V.)