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Background: Along with the fast development and urbanization in developing countries, the waterbodies aside the growing cities become heavily polluted and highly eutrophic, thus leading to the seasonal outbreak of cyanobacterial bloom. Systematic isolation and characterization of freshwater cyanophages might provide a biological solution to control the awful blooms. However, genomic sequences and related investigations on the freshwater cyanophages remain very limited to date. Results: Following our recently reported five cyanophages Pam1~Pam5 from Lake Chaohu in China, here we isolated another five cyanophages, termed Pan1~Pan5, which infect the cyanobacterium Pseudanabaena sp. Chao 1811. Whole-genome sequencing showed that they all contain a double-stranded DNA genome of 37.2 to 72.0 kb in length, with less than half of the putative open reading frames annotated with known functions. Remarkably, the siphophage Pan1 encodes an auxiliary metabolic gene phoH and constitutes, together with the host, a complete queuosine modification pathway. Proteomic analyses revealed that although Pan1~Pan5 are distinct from each other in evolution, Pan1 and Pan3 are somewhat similar to our previously identified cyanophages Pam3 and Pam1 at the genomic level, respectively. Moreover, phylogenetic analyses suggested that Pan1 resembles the α-proteobacterial phage vB_DshS-R5C, revealing direct evidence for phage-mediated horizontal gene transfer between cyanobacteria and α-proteobacteria. Conclusion: In addition to the previous reports of Pam1~Pam5, the present findings on Pan1~Pan5 largely enrich the library of reference freshwater cyanophages. The abundant genomic information provides a pool to identify novel genes and proteins of unknown function. Moreover, we found for the first time the evolutionary traces in the cyanophage that horizontal gene transfer might occur at the level of not only inter-species, but even inter-phylum. It indicates that the bacteriophage or cyanophage could be developed as a powerful tool for gene manipulation among various species or phyla. [ABSTRACT FROM AUTHOR]

This paper provides a systematic treatment of tubular microfossils collected from dolomitic phosphorites of the Ediacaran Doushantuo Formation at Weng’an, South China. These microfossils were investigated using petrographic, acid extraction and re-embedding techniques. Four morphological genera and five morphospecies are described: Ramitubus increscens gen. et sp. nov., Ramitubus decrescens gen. et sp. nov., Sinocyclocyclicus guizhouensis, Quadratitubus orbigoniatus, and Crassitubus costatus gen. et sp. nov. They are characterized by cylindrical ( R. increscens, R. decrescens, S. guizhouensis and C. costatus) or tetragonal ( Q. orbigoniatus) tubes with closely spaced cross-walls. Ramitubus has mostly complete cross-walls, whereas all other taxa have regularly intercalated complete and incomplete cross-walls. Some of them branch dichotomously ( R. increscens and R. decrescens), others have a longitudinal ridge running along a curved tube ( C. costatus). The palaeoecology, ontogeny, and phylogenetic affinity of these microfossils are still uncertain. They probably represent non-biomineralizing organisms in the Ediacaran ocean. Ramitubus (and possibly all other morphotaxa described in this paper) was probably benthic and grew unidirectionally and episodically. The incomplete cross-walls could have been formed through terminal addition or, alternatively, through intercalary insertion. It is possible that some or all morphotaxa described may represent ontogenetic or ecophenotypic variations of one or a few closely related biological species. If so, then the combination of morphological features (complete and incomplete cross-walls, tetraradial symmetry, and longitudinal ridge) can negate a cyanobacterial or algal interpretation, and point to a tentative cnidarian affinity. [ABSTRACT FROM AUTHOR]