1. Haplotype-Based Analysis of KIR -Gene Profiles in a South European Population-Distribution of Standard and Variant Haplotypes, and Identification of Novel Recombinant Structures.
- Author
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Cisneros E, Moraru M, Gómez-Lozano N, Muntasell A, López-Botet M, and Vilches C
- Subjects
- Alleles, DNA Copy Number Variations, Europe, Flow Cytometry, Gene Frequency, Genetics, Population, Haplotypes, Humans, Polymorphism, Genetic, Receptors, KIR metabolism, Recombination, Genetic, Spain, Transcriptome, Genotype, Killer Cells, Natural metabolism, Receptors, KIR genetics
- Abstract
Inhibitory Killer-cell Immunoglobulin-like Receptors (KIR) specific for HLA class I molecules enable human natural killer cells to monitor altered antigen presentation in pathogen-infected and tumor cells. KIR genes display extensive copy-number variation and allelic polymorphism. They organize in a series of variable arrangements, designated KIR haplotypes, which derive from duplications of ancestral genes and sequence diversification through point mutation and unequal crossing-over events. Genomic studies have established the organization of multiple KIR haplotypes-many of them are fixed in most human populations, whereas variants of those have less certain distributions. Whilst KIR -gene diversity of many populations and ethnicities has been explored superficially (frequencies of individual genes and presence/absence profiles), less abundant are in-depth analyses of how such diversity emerges from KIR -haplotype structures. We characterize here the genetic diversity of KIR in a sample of 414 Spanish individuals. Using a parsimonious approach, we manage to explain all 38 observed KIR -gene profiles by homo- or heterozygous combinations of six fixed centromeric and telomeric motifs; of six variant gene arrangements characterized previously by us and others; and of two novel haplotypes never detected before in Caucasoids. Associated to the latter haplotypes, we also identified the novel transcribed KIR2DL5B
* 0020202 allele, and a chimeric KIR2DS2 / KIR2DL3 gene (designated KIR2DL3* 033 ) that challenges current criteria for classification and nomenclature of KIR genes and haplotypes., (Copyright © 2020 Cisneros, Moraru, Gómez-Lozano, Muntasell, López-Botet and Vilches.)- Published
- 2020
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