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In 2018–2019, Central Europe experienced an unprecedented 2-year drought with severe impacts on society and ecosystems. In this study, we analyzed the impact of this drought on water quality by comparing long-term (1997–2017) nitrate export with 2018–2019 export in a heterogeneous mesoscale catchment. We combined data-driven analysis with process-based modeling to analyze nitrogen retention and the underlying mechanisms in the soils and during subsurface transport. We found a drought-induced shift in concentration–discharge relationships, reflecting exceptionally low riverine nitrate concentrations during dry periods and exceptionally high concentrations during subsequent wet periods. Nitrate loads were up to 73 % higher compared to the long-term load–discharge relationship. Model simulations confirmed that this increase was driven by decreased denitrification and plant uptake and subsequent flushing of accumulated nitrogen during rewetting. Fast transit times (<2 months) during wet periods in the upstream sub-catchments enabled a fast water quality response to drought. In contrast, longer transit times downstream (>20 years) inhibited a fast response but potentially contribute to a long-term drought legacy. Overall, our study reveals that severe droughts, which are predicted to become more frequent across Europe, can reduce the nitrogen retention capacity of catchments, thereby intensifying nitrate pollution and threatening water quality. [ABSTRACT FROM AUTHOR]