5 results on '"Molecular study"'
Search Results
2. Study of Altenia wagneriella (rebel) as a predator associated with Forda marginata from Iran.
- Author
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Nehrangi H, Vahedi H, Roshan-Heidari M, and Jamali S
- Subjects
- Animals, Iran, Electron Transport Complex IV genetics, Cytochromes b genetics, Polymerase Chain Reaction methods, Aphids genetics, Aphids physiology, Larva genetics, Predatory Behavior, Moths genetics
- Abstract
Background: The larvae of Altenia spp. and gall aphids are known to feed on plants related to Anacardiaceae. This study documents the aphidophagous habit of Altenia wagneriella, which was verified by molecular techniques, subsequently by the gut dissection test, and direct observation., Materials and Methods: To identify the moth larvae and adult aphids, two mitochondrial genes, cytochrome c oxidase I (COI) and cytochrome b (Cytb), were amplified by polymerase chain reaction (PCR). Nested PCR with the aphid-specific primer pairs AphidF and AphidR was used to detect aphids in the body of moth larvae. The specificity of the primers was verified by PCR analysis of DNA from moth larvae and adult aphids., Results: The method detected aphids in moth larvae, and a band of approximately 200 bp was amplified from moth larvae feeding on aphids. No cross reactions with moth larvae were observed. In the laboratory, all moth larvae feeding on aphids (Forda marginata) were also PCR positive for aphids., Conclusions: Gall-inducing insects are microhabitat engineers that manipulate their host to obtain a better nutrient supply, as well as protection from natural enemies and abiotic factors. This is the first recorded instance worldwide of the carnivorous larva of the moth A. wagneriella acting as an aphid predator, as well as the first record of a host insect for this species. Additionally, it is the first effort to molecularly analyze the predator-prey relationship between the moth larvae and the aphids inside the wild pistachio gall., (© 2024. The Author(s), under exclusive licence to Springer Nature B.V.)
- Published
- 2024
- Full Text
- View/download PDF
3. Faunistic and Molecular Surveys on the Pistachio Hemiptera of Rafsanjan Region and Vicinity, South East Iran.
- Author
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ZEINODINI, Najmeh, AWAL, Mehdi MODARRES, and KARIMI, Javad
- Subjects
- *
PISTACHIO , *HEMIPTERA , *ORCHARDS , *BIOLOGICAL control of insects , *SURVEYS , *PLANT resistance to insects , *MOLECULAR genetics - Abstract
Pistachio is considered to be a strategic crop of Iran. Some groups of true bugs are among key pests of pistachio orchards throughout the country. Here, a comprehensive collecting of true bugs in pistachio orchards and surrounding weeds in Rafsanjan region (Kerman province) and its suburbs since March 2009 up to November 2011, resulted in finding 46 species of 37 genera, 17 subfamilies and 10 families. Among the collected specimens, two species of Riptortus oxianus Kiritshenko, 1914 and Parapiesma rotundatum Horvath, 1906 from Alydidae and Piesmatidae have been reported as new records for Iran. In order to study the genetic population, a partial segment of COI gene of samples was sequenced. The sequences were compared with those retrieved from the BOLD system and the GenBank through nBLAST. The results showed the COI sequences in the studied specimens can facilitate the separation of the species. Based on the relationships between these species, 10 tribes were clearly distinguished from each other as well as two infraorders, Cimicomorpha and Pentatomomorpha. This is the first effort to molecular study on the true bugs in Iran's pistachio orchards [ABSTRACT FROM AUTHOR]
- Published
- 2013
4. Analysis of the HEXA, HEXB, ARSA, and SMPD1 Genes in 68 Iranian Patients.
- Author
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Abtahi R, Karimzadeh P, Rezayi A, Salehpour S, Akbarzadeh D, Tonekaboni SH, Emameh RZ, and Houshmand M
- Subjects
- Exons, Genotype, Heterozygote, Humans, Iran, Mutation, Sphingomyelin Phosphodiesterase, beta-Hexosaminidase alpha Chain, beta-Hexosaminidase beta Chain genetics, Tay-Sachs Disease genetics
- Abstract
Lysosomal storage diseases (LSDs) are known as genetic disorders with an overall prevalence of 1 per 7700 live births. Sphingolipidosis, which is a subgroup of LSDs, is resulted from mutations in the coding genes of specific enzymes of sphingolipid hydrolases. The current study aimed to provide additional knowledge on the genotype of sphingolipidoses disease among Iranian patients affected by the disease. In this research, we studied 68 unrelated Iranian patients diagnosed with one kind of sphingolipidoses from 2014 to 2019. Thereafter, genomic DNA was isolated from their peripheral blood leukocytes samples in EDTA in terms of the manufacturer's protocol. All the coding exons and exon-intron boundaries of the related genes were sequenced and then analyzed using the NCBI database. Finally, they were reviewed using some databases such as the Human Gene Mutation Database (HGMD) and ClinVar ( https://www.ncbi.nlm.nih.gov/clinva ). By studying 22 MLD patients, 18 different variations of the ARSA gene were found, one of which was new including, named as c.472 T > G p. (Cys158Gly). Out of 15 Sandhoff disease (SD) patients, 11 different variations of the HEXB gene were found. Correspondingly, the c.1083-2delA was not reported earlier. By investigating 21 Iranian patients with Tay-Sachs disease (TSD), one new variant was found as c.622delG. The study of 10 Niemann-Pick disease A/B (NPDA/B (patients has led to the identification of 9 different SMPD1 gene variations, among which 3 variations were novel mutations. The results of the present study can be expanded to the genotypic spectrum of Iranian patients with MLD, SD, TSD, and NPD diseases and also used to innovate more effective methods for the detection of genetic carriers as well as diagnosing and counseling of Iranian patients affected with these disorders., (© 2021. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.)
- Published
- 2022
- Full Text
- View/download PDF
5. Identification of novel mutations among Iranian NPC1 patients: a bioinformatics approach to predict pathogenic mutations.
- Author
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Abtahi R, Karimzadeh P, Aryani O, Akbarzadeh D, Salehpour S, Rezayi A, Tonekaboni SH, Emameh RZ, and Houshmand M
- Subjects
- Exons, Humans, Iran, Mutation, Niemann-Pick C1 Protein, Computational Biology, Niemann-Pick Disease, Type C genetics
- Abstract
Background: Niemann-Pick disease type C (NPC) is a rare lysosomal neurovisceral storage disease caused by mutations in the NPC 1 (95%) or NPC2 (5%) genes. The products of NPC1 and NPC2 genes play considerable roles in glycolipid and cholesterol trafficking, which could consequently lead to NPC disease with variable phenotypes displaying a broad spectrum of symptoms., Materials: In the present study 35 Iranian NPC unrelated patients were enrolled. These patients were first analysed by the Filipin Staining test of cholesterol deposits in cells for NPC diagnostics. Genomic DNA was extracted from the samples of peripheral blood leukocytes in EDTA following the manufacturer's protocol. All exon-intron boundaries and coding exons of the NPC1gene were amplified by polymerase chain reaction (PCR) using appropriate sets of primers. Thereafter, the products of PCR were sequenced and analysed using the NCBI database ( https://blast.ncbi.nlm.nih.gov/Blast.cgi ). The variants were reviewed by some databases including the Human Gene Mutation Database (HGMD) ( http://www.hgmd.cf.ac.uk/ac/index.php ) and ClinVar ( https://www.ncbi.nlm.nih.gov/clinvar (. Moreover, all the variants were manually classified in terms of the American College of Medical Genetics and Genomics (ACMG) guideline., Results: The sequence analysis revealed 20 different variations, 10 of which are new, including one nonsense mutation (c.406C > T); three small deletions, (c.3126delC, c.2920_2923delCCTG, and c.2037delG); and six likely pathogenic missense mutations, (c.542C > A, c.1970G > A, c.1993C > G, c.2821 T > C, c.2872C > G, and c.3632 T > A). Finally, the pathogenicity of these new variants was determined using the ACMG guidelines., Conclusion: The present study aimed to facilitate the prenatal diagnosis of NPC patients in the future. In this regard, we identified 10 novel mutations, and verified that the majority of them occurred in six NPC1 exons (5, 8, 9, 13, 19, and 21), that should be considered with a high priority for Iranian patients' cost-effective evaluation., (© 2022. The Author(s).)
- Published
- 2022
- Full Text
- View/download PDF
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