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Introduced non-native species can threaten native species through interspecific hybridisation and genetic introgression. We assessed the prevalence of hybridisation and introgression between introduced European brown hare, Lepus europaeus, and the endemic Irish hare, L. timidus hibernicus. Roadkill hares (n = 56) were sequenced for a 379bp section of the mitochondrial DNA D-loop and a 474bp segment of the nuclear transferrin (Tf) gene. A species-specific indel in the transferrin gene was present in L.t. hibernicus and absent in L. europaeus. Excluding three hares from which molecular data could not be recovered, 28 hares (53%) were native L.t. hibernicus, 7 (13%) were non-native L. europaeus and 18 (34%) were hybrids; of which 5 (28%) were first generation (F1) involving bidirectional crosses with mismatched nuclear and mtDNA (3 ♂ europaeus x ♀ hibernicus and 2 ♂ hibernicus x ♀ europaeus). Mixed nuclear transferrin sequences suggested 13 (72%) of hybrids were at least 2nd generation (F2) with 9 (69%) possessing L.t. hibernicus and 4 (31%) L. europaeus mtDNA (the latter indicative of hybrid backcrossing with the non-native). The prevalence of hybridisation at similar mountain-brown hare contact zones throughout Europe is notably lower (4–16%) and typically unidirectional (♂ europaeus x ♀ timidus). A high prevalence of bidirectional hybridisation and introgression (in association with projected climate change) may favour the introduced species over the native. Genetic surveillance and population monitoring are needed to further explore the potential conservation implications of European brown hare in Ireland. [ABSTRACT FROM AUTHOR]

Understanding the evolution of local adaptations is a central aim of evolutionary biology and key for the identification of unique populations and lineages of conservation relevance. By combining RAD sequencing and whole‐genome sequencing, we identify genetic signatures of local adaptation in mountain hares (Lepus timidus) from isolated and distinctive habitats of its wide distribution: Ireland, the Alps and Fennoscandia. Demographic modelling suggested that the split of these mountain hares occurred around 20 thousand years ago, providing the opportunity to study adaptive evolution over a short timescale. Using genome‐wide scans, we identified signatures of extreme differentiation among hares from distinct geographic areas that overlap with area‐specific selective sweeps, suggesting targets for local adaptation. Several identified candidate genes are associated with traits related to the uniqueness of the different environments inhabited by the three groups of mountain hares, including coat colour, ability to live at high altitudes and variation in body size. In Irish mountain hares, a variant of ASIP, a gene previously implicated in introgression‐driven winter coat colour variation in mountain and snowshoe hares (L. americanus), may underlie brown winter coats, reinforcing the repeated nature of evolution at ASIP moulding adaptive seasonal colouration. Comparative genomic analyses across several hare species suggested that mountain hares' adaptive variants appear predominantly species‐specific. However, using coalescent simulations, we also show instances where the candidate adaptive variants have been introduced via introgressive hybridization. Our study shows that standing adaptive variation, including that introgressed from other species, was a crucial component of the post‐glacial dynamics of species. [ABSTRACT FROM AUTHOR]

Animal populations at northern latitudes may have cyclical dynamics that are degraded by climate change leading to trophic cascade. Hare populations at more southerly latitudes are characterized by dramatic declines in abundance associated with agricultural intensification. We focus on the impact of historical climatic and agricultural change on a mid‐latitude population of mountain hares, Lepus timidus hibernicus. Using game bag records from multiple sites throughout Ireland, the hare population index exhibited a distinct regime shift. Contrary to expectations, there was a dynamical structure typical of northern latitude hare populations from 1853 to 1908, during which numbers were stable but cyclic with a periodicity of 8 years. This regime was replaced by dynamics more typical of southern latitude hare populations from 1909 to 1970, in which cycles were lost and numbers declined dramatically. Destabilization of the autumn North Atlantic Oscillation (NAO) led to the collapse of similar cycles in the hare population, coincident with the onset of agricultural intensification (a shift from small‐to‐large farms) in the first half of the 20th century. Similar, but more recent regime shifts have been observed in Arctic ecosystems and attributed to anthropogenic climate change. The present study suggests such shifts may have occurred at lower latitudes more than a century ago during the very early 20th century. It seems likely that similar tipping points in the population collapse of other farmland species may have occurred similarly early but went undocumented. As northern systems are increasingly impacted by climate change and probable expansion of agriculture, the interaction of these processes is likely to disrupt the pulsed flow of resources from cyclic populations impacting ecosystem function. [ABSTRACT FROM AUTHOR]

Invasive species pose one of the most serious global threats to biodiversity. Investigations into the interactions of native and non‐native species focus on the impacts of single species, despite being embedded in a network of direct and indirect interactions between multiple species and their environments.We developed 1‐km2 resolution, single‐species and multi‐species occupancy models using quantitative camera trap data collected by citizen scientists at 332 sites in a regional survey comprising the 14,130 km2 of Northern Ireland.Recent research suggests that native red and invasive grey squirrels in Britain and Ireland are linked by resource and disease‐mediated competition, and by a shared enemy, the European pine marten. We demonstrate that the presence of the pine marten reverses red squirrel replacement by grey squirrels on a regional basis, with red squirrel occupancy positively affected by exposure to pine marten. In contrast, the grey squirrel has a strongly negative response to the presence of pine marten.Modelling habitat suitability of pine marten and both squirrel species suggests that, despite the potentially strong effect of a recovering population of pine martens in controlling grey squirrel distribution, the latter is likely to persist in urban refugia that are either inaccessible or avoided by the pine marten.Synthesis and applications. Sustainable recovery of both the red squirrel and the pine marten across the wider landscapes of Ireland, Scotland and Northern England seems probable, while in Southern England and Wales, although possible, chances are more remote. Increasing native woodland cover on a landscape scale to facilitate pine marten recovery may assist in realizing this scenario. Despite the ongoing recovery of the pine marten, and resultant declines in grey squirrels, isolated populations are likely to persist in urban areas. Human‐lead control of grey squirrel populations in urban refugia requires urgent funding and implementation to avoid the development of novel genotypes in grey squirrel source populations that enable the species to better avoid predation by the pine marten. [ABSTRACT FROM AUTHOR]

Invasive alien species pose one of the greatest threats to global biodiversity. In parts of Europe, introduced eastern grey squirrels (Sciurus carolinensis) have caused regional extinctions of the native red squirrel (Sciurus vulgaris). However, exposure to pine martens (Martes martes) has been demonstrated to reverse the competitive outcome between red and grey squirrels. The mechanism whereby this effect occurs remains unclear. It is hypothesised that direct predation, facilitated by a lack of behavioural response, is the mechanism driving this relationship. We review the literature and reanalyse a new dataset to provide further data on the occurrence of both squirrel species in the scats of pine marten. Both squirrel species occurred in the scats of pine marten confirming its role as a predator of these species. Predation of grey squirrels was significantly higher than red squirrels and was recorded only in spring and summer. Our review provides evidence for the mechanism driving the current decline in grey squirrels in Ireland and Scotland and supports the hypothesis that in the presence of a shared predator, direct predation influences the outcome of species interactions between native red and non-native grey squirrels. [ABSTRACT FROM AUTHOR]

Endogenous circadian and seasonal activity patterns are adapted to facilitate effective utilisation of environmental resources. Activity patterns are shaped by physiological constraints, evolutionary history, circadian and seasonal changes and may be influenced by other factors, including ecological competition and interspecific interactions. Remote-sensing camera traps allow the collection of species presence data throughout the 24 h period and for almost indefinite lengths of time. Here, we collate data from 10 separate camera trap surveys in order to describe circadian and seasonal activity patterns of 10 mammal species, and, in particular, to evaluate interspecific (dis)associations of five predator-prey pairs. We recorded 8,761 independent detections throughout Northern Ireland. Badgers, foxes, pine martens and wood mice were nocturnal; European and Irish hares and European rabbits were crepuscular; fallow deer and grey and red squirrels were diurnal. All species exhibited significant seasonal variation in activity relative to the timing of sunrise/sunset. Foxes in particular were more crepuscular from spring to autumn and hares more diurnal. Lagged regression analyses of predator-prey activity patterns between foxes and prey (hares, rabbits and wood mice), and pine marten and prey (squirrel and wood mice) revealed significant annual and seasonal cross-correlations. We found synchronised activity patterns between foxes and hares, rabbits and wood mice and pine marten and wood mice, and asynchrony between squirrels and pine martens. Here, we provide fundamental ecological data on endemic, invasive, pest and commercially valuable species in Ireland, as well as those of conservation importance and those that could harbour diseases of economic and/or zoonotic relevance. Our data will be valuable in informing the development of appropriate species-specific methodologies and processes and associated policies. [ABSTRACT FROM AUTHOR]

Establishing how invasive species impact upon pre-existing species is a fundamental question in ecology and conservation biology. The greater white-toothed shrew (Crocidura russula) is an invasive species in Ireland that was first recorded in 2007 and which, according to initial data, may be limiting the abundance/distribution of the pygmy shrew (Sorex minutus), previously Ireland's only shrew species. Because of these concerns, we undertook an intensive live-trapping survey (and used other data from live-trapping, sightings and bird of prey pellets/nest inspections collected between 2006 and 2013) to model the distribution and expansion of C. russula in Ireland and its impacts on Ireland's small mammal community. The main distribution range of C. russula was found to be approximately 7,600 km2 in 2013, with established outlier populations suggesting that the species is dispersing with human assistance within the island. The species is expanding rapidly for a small mammal, with a radial expansion rate of 5.5 km/yr overall (2008–2013), and independent estimates from live-trapping in 2012–2013 showing rates of 2.4–14.1 km/yr, 0.5–7.1 km/yr and 0–5.6 km/yr depending on the landscape features present. S. minutus is negatively associated with C. russula. S. minutus is completely absent at sites where C. russula is established and is only present at sites at the edge of and beyond the invasion range of C. russula. The speed of this invasion and the homogenous nature of the Irish landscape may mean that S. minutus has not had sufficient time to adapt to the sudden appearance of C. russula. This may mean the continued decline/disappearance of S. minutus as C. russula spreads throughout the island. [ABSTRACT FROM AUTHOR]

Red squirrels (Sciurus vulgaris) declined in Great Britain and Ireland during the last century, due to habitat loss and the introduction of grey squirrels (Sciurus carolinensis), which competitively exclude the red squirrel and act as a reservoir for squirrelpox virus (SQPV). The disease is generally fatal to red squirrels and their ecological replacement by grey squirrels is up to 25 times faster where the virus is present. We aimed to determine: (1) the seropositivity and prevalence of SQPV DNA in the invasive and native species at a regional scale; (2) possible SQPV transmission routes; and, (3) virus degradation rates under differing environmental conditions. Grey (n = 208) and red (n = 40) squirrel blood and tissues were sampled. Enzyme-linked immunosorbent assay (ELISA) and quantitative real-time polymerase chain reaction (qPCR) techniques established seropositivity and viral DNA presence, respectively. Overall 8% of squirrels sampled (both species combined) had evidence of SQPV DNA in their tissues and 22% were in possession of antibodies. SQPV prevalence in sampled red squirrels was 2.5%. Viral loads were typically low in grey squirrels by comparison to red squirrels. There was a trend for a greater number of positive samples in spring and summer than in winter. Possible transmission routes were identified through the presence of viral DNA in faeces (red squirrels only), urine and ectoparasites (both species). Virus degradation analyses suggested that, after 30 days of exposure to six combinations of environments, there were more intact virus particles in scabs kept in warm (25°C) and dry conditions than in cooler (5 and 15°C) or wet conditions. We conclude that SQPV is present at low prevalence in invasive grey squirrel populations with a lower prevalence in native red squirrels. Virus transmission could occur through urine especially during warm dry summer conditions but, more notably, via ectoparasites, which are shared by both species. [ABSTRACT FROM AUTHOR]

The article examines the status and distribution of Myotis mystacinus and Myotis brandtii in Ireland. Ireland has an impoverished fauna because of its glacial history, small land area and island status. M. brandtii is a cryptic species that is difficult to separate from M. mystacinus, which is found across Europe. A genetic survey showed that no long term misidentification has taken place and that all specimens sampled were M. mystacinus. During six nights of woodland trapping using the acoustic lure, no further records of M. brandtii were found.

1. Skeletal remains of greater white-toothed shrew Crocidura russula were recovered from barn owl Tyto alba and kestrel Falco tinnunculus pellets collected at 15 locations in Counties Tipperary and Limerick in Ireland in September 2007 and March 2008. Seven greater white-toothed shrews were trapped at four locations in Tipperary in March 2008. This is the first Irish record of C. russula and compelling evidence that the species is established in Ireland. 2. The absence of C. russula from earlier surveys of owl pellets and small mammals in Ireland suggests a recent introduction by uncertain means, possibly since 2001. It seems likely that C. russula will expand its range in Ireland. Its impact on the ecology of habitats in which it is found is uncertain but may be considerable. [ABSTRACT FROM AUTHOR]

The management of invasive non-native species is a frequent cause of conflict in the field of biodiversity conservation because perceptions of their costs and benefits differ among stakeholder groups. A lack of cohesion between scientific researchers, the commercial sector and policy makers lies at the root of a widespread failure to develop and implement sustainable management practices for invasive species. The crisis of this situation is intensified by drivers stemming from international conventions and directives to address invasive species issues. There are further direct conflicts between legislative instruments promoting biodiversity conservation on the one hand while liberalizing trade at the national, European and global level on the other. The island of Ireland provides graphic illustration of the importance of cross-jurisdictional approaches to biological invasions. Using primarily Irish examples in this review, we emphasize the importance of approaching risk assessment, risk reduction and control or eradication policies from a cost-efficient, highly flexible perspective, incorporating linkages between environmental, economic and social objectives. The need for consolidated policies between Northern Ireland and the Republic of Ireland is particularly acute, though few model cross-border mechanisms for such consolidation are available. The importance of engaging affected stakeholders through positive interactions is discussed with regard to reducing the currently fragmented nature of invasive species management between the two jurisdictions. [ABSTRACT FROM AUTHOR]

ABSTRACT The Northern Ireland Hare Survey documented the distribution of the Irish Hare (Lepus timidus hibernicus ). Historical game bag records and other, more contemporary, records of hare distribution were examined. These data indicate how numbers of L. t. hibernicus may have changed over the last 140 years. The results of the Northern Ireland Hare Survey suggested that L. t. hibernicus was widespread throughout Northern Ireland. Current average densities are no more than 0.65 hares/km2 . Game bag records indicate that hare densities may have been much higher in the past, with a maximum of 138 hares/km2 recorded on Crom Estate, Co. Fermanagh, in 1864. Evidence from hare distribution recorded during the Northern Ireland Rabbit Survey indicates that hare numbers declined between 1984 and 1994. Evidence from all sources suggests that L. t. hibernicus has declined in abundance substantially, with present total population estimates for Northern Ireland ranging from 8250 to 21 000 individuals. Flushing data indicate that rushes and hedgerows are important diurnal resting areas for hares. While the principal reason for the decline in numbers of L. t. hibernicus in Northern Ireland is not clear, more species-rich pasture and provision of areas of cover, such as rushes, may arrest further declines, or indeed promote numbers of hares, particularly in lowland areas. [ABSTRACT FROM AUTHOR]

The helminths of the alimentary tract of wood mice, Apodemus sylvaticus, were studied at two sites over a 33-month period. Nine helminth species were recovered regularly. All but one was absent for at least 1 month. Monthly samples from these helminth communities were more similar to samples taken in the following month than to samples taken at progressively greater intervals up to a year. Helminth communities at both sites, however, had cyclical elements. Comparison of mean similarity indices for helminth faunas from 33 monthly samples and those from data sets generated by four null models suggests that observed values did not differ from a model where relative abundance of each species was determined randomly with specific maxima of abundance and species absences based on observed data. Loss of helminth species may decrease measurements of community stability based on relative abundance while persistence of abundant species increases stability. Helminth faunas in samples of A. sylvaticus from six localities taken at the same time of year at 5-year intervals indicated that some changed radically while others remained virtually unchanged. The considerable variation in helminth communities from different localities was not related to proximity or gross habitat characteristics. Nematospiroides dubius, Corrigia vitta and Capillaria murissylvatici were important in discriminating between the parasite faunas at different sites. Abundance of Syphacia stroma varied considerably between spatial surveys reflecting differences in host population dynamics in the 2 years. The present report and data from elsewhere in Ireland suggest that species composition of the helminths associated with A. sylvaticus may be stable over a wider geographical scale. There were neither strong nor consistent positive or negative interactions between pairs of helminth species. It is concluded that the stability characteristics of this parasite community, in terms of species composition and relative abundance, are the product of the population biology of independent parasite species rather than interspecific interactions. Variation in the role of competition in parasite communities is discussed.