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The Yukawa River is an extremely acidic river whose waters on the east foot of the Kusatu-Shirane Volcano (in Gunma Prefecture, Japan) contain sulfate ions. Here we isolated many acid-tolerant yeasts from the Yukawa River, and some of them neutralized an acidic R2A medium containing casamino acid. Candida fluviatilis strain CeA16 had the strongest acid tolerance and neutralizing activity against the acidic medium. To clarify these phenomena, we performed neutralization tests with strain CeA16 using casamino acid, a mixture of amino acids, and 17 single amino acid solutions adjusted to pH 3.0, respectively. Strain CeA16 neutralized not only acidic casamino acid and the mixture of amino acids but also some of the acidic single amino acid solutions. Seven amino acids were strongly decomposed by strain CeA16 and simultaneously released ammonium ions. These results suggest strain CeA16 is a potential yeast as a new tool to neutralize acidic environments. [ABSTRACT FROM AUTHOR]

Background: Seasonally prevalent H1N1 and H3N2 influenza A viruses have evolved by antigenic drift; this evolution has resulted in the acquisition of asparagine (N)-linked glycosylation sites (NGSs) in the globular head of hemagglutinin (HA), thereby affecting the antigenic and receptor-binding properties, as well as virulence. An epidemiological survey indicated that although the traditional seasonal H1N1 strain had disappeared, H3N2 became predominant again in the seasons (2010-11 and 2011-12) immediately following the H1N1 pandemic of 2009. Interestingly, although the 2009 pandemic H1N1 strain (H1N1pdm09) lacks additional NGSs, clinically isolated H3N2 strains obtained during these seasons gained N (Asn) residues at positions 45 and 144 of HA that forms additional NGSs.Methods: To investigate whether these NGSs are associated with re-emergence of H3N2 within the subtype, we tested the effect of amino acid substitutions on neutralizing activity by using the antisera raised against H3N2 strains with or without additional NGSs. Furthermore, because the N residue at position 144 of HA was identified as the site of mismatch between the vaccine and epidemic strains of 2011-2012, we generated mutant viruses by reverse genetics and tested the functional importance of this particular NGS for antibody-mediated neutralization by intranasal inoculation of mice.Results: The results indicated that amino acid substitution at residue 144 significantly affected neutralization activity, acting as an escape mutation.Conclusions: Our data suggest that the newly acquired NGSs in the HA globular head may play an important role in the re-emergence of endemic seasonal H3N2 strain by aiding the escape from humoral immunity. [ABSTRACT FROM AUTHOR]

Acid mine drainage (AMD) from about 80 abandoned or closed mines in Japan are actively treated by neutralization; the government spends billions of yen every year to protect the environment from these discharges, and treatment will have to continue for many years. However, it is difficult to predict the future AMD chemistry, neutralizer requirements, and volume of sludge to establish future costs, chemical inputs, and wastes. The water monitoring data or source rock samples for conventional predictive methods are not available. In this study, a predictive model for AMD composition and the neutralization process was constructed based on geochemical modeling, assuming first order kinetics for the dissolution of several minerals. The solution composition, neutralizer requirements, and sludge generation were estimated for case studies at two abandoned mines in Japan: a sulfur mine, and a copper and iron mine. The model effectively predicted AMD composition after termination of mining and was also useful for estimating future neutralizer requirements and sludge volumes. This research will increase understanding of the lifecycle environmental costs in the mining industry. [ABSTRACT FROM AUTHOR]

Abstract: Several procedures for conservation treatment were comparatively studied for degraded “Suga-fibres” made of raw silk fibres dyed black. Two traditional methods, (1) neutralization with magnesium bicarbonate, and (2) antioxidant treatment with phytic acid, originally used for paper preservation, were tried for the conservation of Suga-fibres. The influences of a single treatment, or a combination of neutralization and antioxidant treatments, for the model fibres on their tensile strength were investigated under conditions of high humidity at high temperature before and after the accelerated aging test. The effect of the novel antioxidant cysteine on the fibre degradation was also examined. For the single treatments, the neutralization with magnesium bicarbonate retarded the degradation of higher iron-content iron (20%)/tannate-silk fibre, while the antioxidant with phytic acid treatment most effectively prevented the degradation of lower iron-content iron (2%)/tannate-silk fibre. This may be due to the different acidity in iron/tannate-silk fibres, and thus the degradation of iron (2%)/tannate-silk fibre would be caused by iron-catalyzed oxidation rather than acid-catalyzed hydrolysis because of its lower acidity. Among antioxidant treatments, cysteine more effectively retarded the degradation of the iron (20%)/tannate-silk fibre, while in the case of the iron (2%)/tannate-silk fibre, phytic acid more effectively conserved its strength and breaking strain. The result suggests that the thiol group of cysteine coordinates with an excess of ferrous ions in the iron (20%)/tannate-silk fibre and quenches the production of hydrogen peroxide. This study demonstrated that phytic acid, cysteine and magnesium bicarbonate treatments are useful as effective reagents for the conservation treatment of black-dyed textiles. [Copyright &y& Elsevier]

This article discusses a study which examined avian infectious bronchitis viruses (IBVs) found in Ibaraki Prefecture in Japan in 2009. The study conducted reverse transcription-polymerase chain reaction (PCR) and direct nucleotide sequencing and GenBank BLAST database analysis of the hypervariable region of the SI subunit of the virus. It found that the isolates are genetically different from previously known genotype of the virus in the country. It also conducted virus neutralization tests showing no antisera that neutralized the index isolate.

Calcium species in mineral aerosols collected simultaneously in Aksu (near the Taklimakan Desert), Qingdao (eastern China), and Tsukuba (Japan) during dust and nondust periods were determined using Ca K-edge X-ray absorption near-edge structure (XANES). From the fitting of XANES spectra, it was found that (i) calcite and gypsum were the main Ca species in the aerosol samples, and (ii) the gypsum fraction versus total Ca minerals [Gyp]/[Ca2+]t increased progressively in the order Aksu < Qingdao < Tsukuba. Surface-sensitive XANES in the conversion electron yield mode (CEY) showed that the gypsum is formed selectively at the surface of mineral aerosols for all the samples except for that taken in Aksu during the dust period. The decrease of the [Gyp]/[Ca2+]t ratio with an increase in particle size showed that the neutralization effect proceeds from the particle surface. For the Aksu sample in the dust period, however, (i) the [Gyp]/[Ca2+]t ratios obtained by XANES measured in the fluorescence (FL; regarded as bulk analysis) and CEY modes were similar and (ii) size dependence was not found, showing that neutralization is not important for the sample because of the large supply of mineral aerosol with little neutralization effect in Aksu. It was also found that the pH of the aerosol and the ratio of (NH4)2SO4 to gypsum were positively and negatively correlated with the Ca (or calcite) content, respectively. The speciation of Ca by XANES revealed the neutralization processes of acidic sulfur species by calcite during the long-range transport of mineral aerosols. [ABSTRACT FROM AUTHOR]

The article presents a serological comparative analysis of infectious bronchitis virus (IBV) isolated fields of homologous and heterologous genotypes and IB vaccine strains in Japan. It states that IBV causes respiratory and renal diseases to animals because it is a highly contagious pathogen. It notes that serotype identification of the IBV field isolate is important for vaccine selection. It mentions that the study's goal is to clarify the relationship of genotypes and serotypes for vaccine strains and isolated fields. The study used the virus neutralizing (VN) test to evaluate the reactions of vaccines against strains. It concludes that isolates with the same genotype vaccines are positive and genotyping is a good method to predict effective vaccines against field isolates.

Annual biogeochemical fluxes (bulk precipitation, throughfall, stem flow, soil solution and vegetation uptake) of inorganic elements were observed in eight cool temperature forested ecosystems in Hokkaido, northern Japan, in order to determine the mechanisms of acid neutralization in Japanese forest ecosystems. We compared our results with the other biogeochemical studies in Japan, north Europe and US from the literature. In many Japanese forests, the internal proton production (IPS) by base cation accumulation into the vegetation was a major proton source, rather than external acidic deposition, and the IPS also affected the base cation fluxes from the mineral. IPS in Japanese forest tended to be larger than that in north Europe and US. Our results suggested that the high acid neutralizing ability of Japanese forests could be attributed to the strong relationship between the base cation buffering of the soil and the larger contribution of IPS as a proton source. acidic deposition|biogeochemical cycling|forest ecosystem|Japan|proton budget [ABSTRACT FROM AUTHOR]

The article focuses on the seroprevalence of pseudorabies virus (PRV) in wild boars in Japan. PRV is known to be the causative agent for the epidemic disease Aujeszky's disease that causes high mortality in newborn piglets and abortion in pregnant sows. In the virus neutralization (VN) test performed by the authors, it was disclosed that 6 came out as positive for VN antibody out of the 173 serum samples. It concluded that as PRV continues to affect Japan, caution is needed due to possible transmission from wild boars to pigs.