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Carbon and nitrogen uptake rates by small phytoplankton (0.7–5 μm) in the Kara, Laptev, and East Siberian seas in the Arctic Ocean were quantified using in situ isotope labelling experiments for the first time as part of the NABOS (Nansen and Amundsen Basins Observational System) program during August 21 to September 22, 2013. The depth integrated C, NO3−, and NH4+ uptake rates by small phytoplankton showed a wide range from 0.54 to 15.96 mg C m−2 h−1, 0.05 to 1.02 and 0.11 to 3.73 mg N m−2 h−1, respectively. The contributions of small phytoplankton towards the total C, NO3−, and NH4+ was varied from 24 to 89 %, 32 to 89 %, and 28 to 89 %, respectively. The turnover times for NO3− and NH4+ by small phytoplankton during the present study point towards the longer residence times (years) of the nutrients in the deeper waters, particularly for NO3−. Relatively, higher C and N uptake rates by small phytoplankton obtained during the present study at locations with less sea ice concentrations points towards the possibility of small phytoplankton thrive under sea ice retreat under warming conditions. The high contributions of small phytoplankton towards the total carbon and nitrogen uptake rates suggest capability of small size autotrophs to withstand in the adverse hydrographic conditions introduced by climate change. [ABSTRACT FROM AUTHOR]