Search

Understanding the prey preference of Malayan tiger (Panthera tigris jacksoni) in Malaysia is important to guide conservation planning initiatives. The utilisation of DNA metabarcoding provides valuable insights, particularly in the field of carnivora diet research. This technique has been proven to be effective for identifying various species within complex mixtures such as scat materials, where visual identification is challenging. The Cytochrome c oxidase subunit I (COI) locus has been selected as it is a widely used as an effective non-invasive approach for diet studies. Hence, given this advance approach, Malayan tiger scats were collected on the basis of existing records of their presence in two types of habitats, namely, protected areas (PA) and human–tiger conflict (HTC) areas. This study aimed to identify prey species in Peninsular Malaysia, based on Malayan tiger scat samples using DNA metabarcoding. Based on the partial mitochondrial COI region, DNA metabarcoding led to the taxonomic resolution of prey DNA remnants in scats and the identification of prey species consumed by Malayan tiger, which were predominately small-to-medium-sized prey, including livestock. The dominant DNA prey detected belongs to the family Canidae, followed by Bovidae, Vespertilionidae, Homonidae, Felidae, Phasianidae and Muridae. A significant difference (p < 0.05) was observed in alpha and beta diversity using the Shannon index and PERMANOVA with regard to prey richness and evenness in two different habitat groups, namely, PA and HTC. Our finding provides insights into Malayan tiger dietary requirements, which can be used to develop conservation plans and strategies for Malayan tiger, particularly for habitat priorities. [ABSTRACT FROM AUTHOR]

Human-elephant conflict (HEC) contributes to the increasing death of Asian elephants due to road accidents, retaliatory killings and fatal infections from being trapped in snares. Understanding the diet of elephants throughout Peninsular Malaysia remains crucial to improve their habitat quality and reduce scenarios of HEC. DNA metabarcoding allows investigating the diet of animals without direct observation, especially in risky conflict areas. The aim of this study was to determine: i) the diet of wild Asian elephants from HEC areas in Peninsular Malaysia using DNA metabarcoding and ii) the influence of distinct environmental parameters at HEC locations on their feeding patterns. DNA was extracted from 39 faecal samples and pooled into 12 groups representing the different sample locations: Kuala Koh, Kenyir, Ulu Muda, Sira Batu, Kupang-Grik, Bumbun Tahan, Belum-Temengor, Grik, Kampung Pagi, Kampung Kuala Balah, Aring 10 and the National Elephant Conservation Centre, which served as a positive control for this study. DNA amplification and sequencing targeted the ribulose-bisphosphate carboxylase gene using the next-generation sequencing Illumina iSeq100 platform. Overall, we identified 35 orders, 88 families, 196 genera and 237 species of plants in the diet of the Asian elephants at HEC hotspots. Ficus (Moraceae), Curcuma (Zingiberaceae), Phoenix (Arecaceae), Maackia (Fabaceae), Garcinia (Clusiaceae) and Dichapetalum (Dichapetalaceae) were the highly abundant dietary plants. The plants successfully identified in this study could be used by the Department of Wildlife and National Parks (PERHILITAN) to create buffer zones by planting the recommended dietary plants around HEC locations and trails of elephants within Central Forest Spine (CFS) landscape. [ABSTRACT FROM AUTHOR]

The long-tailed macaque (Macaca fascicularis) has a wide range in both Peninsular Malaysia and Borneo. Although the primates are especially vulnerable to habitat alterations, this primate lives in disturbed habitats due to human-induced land-use. Thus, this study presents a faecal metabarcoding approach to clarify the plant diet of long-tailed macaques from five locations in Peninsular Malaysia to represent fragmented forest, forest edge, island and recreational park habitats. We extracted genomic DNA from 53 long-tailed macaque faecal samples. We found 47 orders, 126 families, 609 genera and 818 species across these five localities. A total of 113 plant families were consumed by long-tailed macaques in Universiti Kebangsaan Malaysia, 61 in the Malaysia Genome and Vaccine Institute, 33 in Langkawi Island, 53 in Redang Island and 44 in the Cenderawasih Cave. Moraceae (33.24%) and Fabaceae (13.63%) were the most common families consumed by long-tailed macaques from the study localities. We found that habitat type impacted diet composition, indicating the flexibility of foraging activities. This research findings provide an understanding of plant dietary diversity and the adaptability of this macaque with the current alteration level that applies to long-tailed macaque conservation management interest in the future. [ABSTRACT FROM AUTHOR]

Ethnoprimatology can be defined as the interaction between human and nonhuman primates that share integrated social and ecological spaces through cultural, religious, and customary contexts. Orang Asli community is highly dependent on natural resources around them and utilise animals in their daily life, including primates, for many purposes such as food, medicine, and pets. However, indiscriminate hunting practice and overhunting have caused a major decline in the primate population, including the species with high conservation importance, which may lead to extinction. Hence, this study aims to document the information on primate utilisation by Temuan in Gunung Ledang, Johor, Malaysia, using an ethnoprimatological approach through a semistructured interview with the aid of a questionnaire. The results indicate that Temuan in Gunung Ledang mainly used five species of primates (Macaca fascicularis, M. nemestrina, Presbytis sp., Hylobates lar, and Trachypithecus obscurus) that comprised two families, namely, Cercopithecidae and Hylobatidae, as entertainment and pets. However, respondents acknowledged that these cultural practices rapidly eroded because of the decline in the primate population in their ranging area, thus making it harder for them to spot and hunt the primates. Findings from this study can be used for developing a sustainable action plan that involves Orang Asli toward conservation of primates and preservation of traditional knowledge of Temuan in Peninsular Malaysia. [ABSTRACT FROM AUTHOR]

Dusky leaf monkey (Trachypithecus obscurus obscurus), are widely distributed in Peninsular Malaysia. The shortage of studies on phylogeographic structure of T. obscurus, at subspecies and population level, as well as the absence of study for the population in Gunung Ledang National Park, Johor, Malaysia, it may adversely affect their conservation management. This study aims to determine the phylogenetic position of T. obscurus at subspecies and population level, as well as the absence of study for the population in Gunung Ledang National Park, Johor, Malaysia, it may adversely affect their conservation management. This study aims to determine the phylogenetic position of T. obscurus in Gunung Ledang and compare it to those of other Malaysian populations using the D-loop region of mitochondrial DNA. Faecal samples were collected from the wild population in Gunung Ledang and sequenced, and used in phylogenetic analysis with six additional genetic samples of T.obscurus from other regions in Peninsular Malaysia, and one sequence of Presbytis melalophos from GenBank. Both neighbor-joining and maximum parsimony trees indicate that populations from Gunung Ledang should beclassified as T. o. obscurues and are monophyletic with thea populations from Endau-Rompin, Johor, and Selangor. This study provides a new insight and contributes to the conservation management strategies of T. obscurus in Malaysia. [ABSTRACT FROM AUTHOR]

Tourists are attracted to the Bukit Melawati Kuala Selangor (BMKS) of Peninsular Malaysia, a small hill park, for both its status as a historical site and the free-ranging silvered langurs (Trachypithecus cristatus) that come for provisioning. We assessed the population trends and group sizes of T. cristatus over 10 years in the BMKS and examined their ranging patterns. Comparisons of observed populations between 2005 (190 individuals) and 2017 (193 individuals) revealed the stable demography and group sizes of the six T. cristatus groups in the BMKS. Based on a total of 185 location points of the six groups in 2017, their mean ranging area was 3.6 ha with a range of 0.86–6.93 ha with extensive spatial overlap. We also found a significant positive relationship between the six groups' ranges and group sizes in 2017. Additionally, qualitative ecological comparisons with a previous study on T. cristatus in 1965 (before provisioning) suggest that the artificial food supply in the study area could modify the population dynamics and socioecology of T. cristatus. The modifications might alter their range size and territoriality in the BMKS. Overall, we found that provisioning had negative effects on the ecology of T. cristatus in the BMKS. Therefore, modifying management policies, such as banning feeding and implementing educational programs, may contribute to their proper conservation. [ABSTRACT FROM AUTHOR]

Visitors presence in primate ecotourism areas could provide variety in primate dietary intake. For this reason, we recorded a list of plants and anthropogenic foods that are consumed by habituated silvered langurs (Trachypithecus cristatus) of Bukit Melawati, Kuala Selangor, Peninsular Malaysia. A total of 24 plant species was identified as the primary natural food resources. Langurs were also exposed to anthropogenic foods brought by visitors. Interestingly, langurs become more selective with anthropogenic foods when they are full. They were also observed rejecting all types of sweets. As feeding primates with anthropogenic food can be harmful, visitors should be educated and provided appropriate information to prevent feeding langurs inappropriate foods. We also suggest that the effects of these foods on langurs should be examined in future studies. [ABSTRACT FROM AUTHOR]

Wolbachia endosymbiont is a maternally inherited bacteria that infects a wide range of hosts, including parasitoids and their respective hosts. In this study, a total of 171 individuals of braconid endoparasitoids, consisting of Fopius arisanus, F. vandenboschi, Diachasmimorpha longicaudata, Psyttalia sp.1, Psyttalia sp.2, P. fletcheri and P. incisi, and their host tephritid fruit flies of Bactrocera dorsalis, B. papayae and B. carambolae infesting carambola were screened molecularly by the Wolbachia surface protein (wsp) gene. Interestingly, 21 (24.14%) wsp gene sequences were successfully isolated from 87 braconid samples tested, showing a low infection rate of Wolbachia. However, despite the close ecological contact between parasitoids and their hosts, none of the tephritid individuals were infected by Wolbachia. A comparison of wsp and host mitochondrial cytochrome c oxidase subunit I (COI) sequences found that braconids did not cluster in connection with Wolbachia infection, suggesting that selective sweep has not yet occurred becauseWolbachia may have recently infected the braconid populations in Peninsular Malaysia (≈0.1MYA). Despite of relatively recent infections of Wolbachia, the history of Wolbachia infection into F. arisanus populations of Peninsular Malaysia is complex, involving at least two independent occasions of infection and two secondary losses. [ABSTRACT FROM AUTHOR]

Here, we present the first complete mitochondrial genome of Malayan Gaur (Bos gaurus hubbacki) inferred using next-generation sequencing. The mitogenome is 16,367 bp in length with the structural organization of a typical bovine mitochondrial arrangement comprising 13 protein-coding genes, 21 tRNAs, and 2 rRNAs. No internal stop codon was found in the protein-coding genes. Phylogenetic tree analysis revealed that Malayan gaur is more closely related to Burmese banteng instead of gaur. [ABSTRACT FROM AUTHOR]

Simple Summary: This study investigated plant diet of wild Macaca arctoides in the Malaysia–Thailand border region using a chloroplast tRNL DNA metabarcoding approach. It is a comprehensive molecular technique to assess foods eaten by primates. We have chosen chloroplast tRNL because this region has been widely used for identifying plant species. Chloroplast tRNL DNA was amplified and sequenced using the Illumina MiniSeq platform. Sequences were analyzed using the CLC Genomic Workbench software version 12.0 to check for M. arctoides plant diet. Across these samples, we successfully identified 29 plant orders, 46 families, 124 genera, and 145 species. As the first report in Malaysia, the findings provide an important understanding on diet of wild M. arctoides that only reside in Perlis State Park, Malaysia. Understanding dietary diversity is a fundamental task in the study of stump-tailed macaque, Macaca arctoides in its natural habitat. However, direct feeding observation and morphological identification using fecal samples are not effective and nearly impossible to obtain in natural habitats because this species is sensitive to human presence. As ecological methods are challenging and time-consuming, DNA metabarcoding offers a more powerful assessment of the diet. We used a chloroplast tRNL DNA metabarcoding approach to identify the diversity of plants consumed by free-ranging M. arctoides in the Malaysia–Thailand border region located in Perlis State Park, Peninsular Malaysia. DNA was extracted from three fecal samples, and chloroplast tRNL DNA was amplified and sequenced using the Illumina MiniSeq platform. Sequences were analyzed using the CLC Genomic Workbench software. A total of 145 plant species from 46 families were successfully identified as being consumed by M. arctoides. The most abundant species were yellow saraca, Saraca thaipingensis (11.70%), common fig, Ficus carica (9.33%), aramata, Clathrotropis brachypetala (5.90%), sea fig, Ficus superba (5.44%), and envireira, Malmea dielsiana (1.70%). However, Clathrotropis and Malmea are not considered Malaysian trees because of limited data available from Malaysian plant DNA. Our study is the first to identify plant taxa up to the species level consumed by stump-tailed macaques based on a DNA metabarcoding approach. This result provides an important understanding on diet of wild M. arctoides that only reside in Perlis State Park, Malaysia. [ABSTRACT FROM AUTHOR]